CsaV3_6G041520.1 (mRNA) Cucumber (Chinese Long) v3

Overview
NameCsaV3_6G041520.1
TypemRNA
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr6: 24159004 .. 24159165 (+)
Sequence length162
RNA-Seq ExpressionCsaV3_6G041520.1
SyntenyCsaV3_6G041520.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GTCCACAAAGCTTTACTTCTCTCACAAGATGAACGACAAGCTGAACCATACCTCTTTGCTTATGATTTAACTGATTCATTGTTGTCACTTGTCTTAAGTTCTATGGTGGTCAAGAAAATAACAAAGAACATTATAATGATTATCATCTCATGGAATGATTAA

mRNA sequence

GTCCACAAAGCTTTACTTCTCTCACAAGATGAACGACAAGCTGAACCATACCTCTTTGCTTATGATTTAACTGATTCATTGTTGTCACTTGTCTTAAGTTCTATGGTGGTCAAGAAAATAACAAAGAACATTATAATGATTATCATCTCATGGAATGATTAA

Coding sequence (CDS)

GTCCACAAAGCTTTACTTCTCTCACAAGATGAACGACAAGCTGAACCATACCTCTTTGCTTATGATTTAACTGATTCATTGTTGTCACTTGTCTTAAGTTCTATGGTGGTCAAGAAAATAACAAAGAACATTATAATGATTATCATCTCATGGAATGATTAA

Protein sequence

VHKALLLSQDERQAEPYLFAYDLTDSLLSLVLSSMVVKKITKNIIMIIISWND*
Homology
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BLAST of CsaV3_6G041520.1 vs. NCBI nr
Match: KAE8647456.1 (hypothetical protein Csa_003476, partial [Cucumis sativus])

HSP 1 Score: 102.1 bits (253), Expect = 1.6e-18
Identity = 53/53 (100.00%), Postives = 53/53 (100.00%), Query Frame = 0 

Query: 1  VHKALLLSQDERQAEPYLFAYDLTDSLLSLVLSSMVVKKITKNIIMIIISWND 54
          VHKALLLSQDERQAEPYLFAYDLTDSLLSLVLSSMVVKKITKNIIMIIISWND
Sbjct: 1  VHKALLLSQDERQAEPYLFAYDLTDSLLSLVLSSMVVKKITKNIIMIIISWND 53

The following BLAST results are available for this feature:
BLAST of CsaV3_6G041520.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KAE8647456.11.6e-18100.00hypothetical protein Csa_003476, partial [Cucumis sativus][more]
BLAST of CsaV3_6G041520.1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CsaV3_6G041520.1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CsaV3_6G041520.1 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CsaV3_6G041520CsaV3_6G041520gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_6G041520.1.exon1CsaV3_6G041520.1.exon1exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_6G041520.1.cds1CsaV3_6G041520.1.cds1CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CsaV3_6G041520.1CsaV3_6G041520.1-proteinpolypeptide