CsaV3_6G041520 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_6G041520
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr6: 24159004 .. 24159165 (+)
RNA-Seq Expression	CsaV3_6G041520
Synteny	CsaV3_6G041520

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GTCCACAAAGCTTTACTTCTCTCACAAGATGAACGACAAGCTGAACCATACCTCTTTGCTTATGATTTAACTGATTCATTGTTGTCACTTGTCTTAAGTTCTATGGTGGTCAAGAAAATAACAAAGAACATTATAATGATTATCATCTCATGGAATGATTAA

mRNA sequence

GTCCACAAAGCTTTACTTCTCTCACAAGATGAACGACAAGCTGAACCATACCTCTTTGCTTATGATTTAACTGATTCATTGTTGTCACTTGTCTTAAGTTCTATGGTGGTCAAGAAAATAACAAAGAACATTATAATGATTATCATCTCATGGAATGATTAA

Coding sequence (CDS)

GTCCACAAAGCTTTACTTCTCTCACAAGATGAACGACAAGCTGAACCATACCTCTTTGCTTATGATTTAACTGATTCATTGTTGTCACTTGTCTTAAGTTCTATGGTGGTCAAGAAAATAACAAAGAACATTATAATGATTATCATCTCATGGAATGATTAA

Protein sequence

VHKALLLSQDERQAEPYLFAYDLTDSLLSLVLSSMVVKKITKNIIMIIISWND*

Homology

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BLAST of CsaV3_6G041520 vs. NCBI nr
Match: KAE8647456.1 (hypothetical protein Csa_003476, partial [Cucumis sativus])

HSP 1 Score: 102.1 bits (253), Expect = 1.6e-18
Identity = 53/53 (100.00%), Postives = 53/53 (100.00%), Query Frame = 0


Query: 1  VHKALLLSQDERQAEPYLFAYDLTDSLLSLVLSSMVVKKITKNIIMIIISWND 54
          VHKALLLSQDERQAEPYLFAYDLTDSLLSLVLSSMVVKKITKNIIMIIISWND
Sbjct: 1  VHKALLLSQDERQAEPYLFAYDLTDSLLSLVLSSMVVKKITKNIIMIIISWND 53

The following BLAST results are available for this feature:

BLAST of CsaV3_6G041520 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8647456.1	1.6e-18	100.00	hypothetical protein Csa_003476, partial [Cucumis sativus]	[more]

BLAST of CsaV3_6G041520 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_6G041520 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_6G041520 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_6G041520.1	CsaV3_6G041520.1	mRNA