Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACTGAGTATGAGAGGAAGTATACTGAGCTCTCCCCGTATACTAAGGCTATAGTAGCATTTGAGAGTGATAGATGCAAGAGGTTTGAAAGAGGTTTGCGGCAGGAGATTCGTACCCTAATTATAGCTATAGCAAAATGGACCAACATCTTCCAATTGGTAGAAATTGTTTTGCAAGTAAAGTAGAGTATAGAAGGACCAAAGCTAGTGTTGGAGCCTAGTAAAGGGGCCAGTTAGTGGCTTTAGGACTGGAAATTAG
mRNA sequence
ATGACTGAGTATGAGAGGAAGTATACTGAGCTCTCCCCGTATACTAAGGCTATAGTAGCATTTGAGAGTGATAGATGCAAGAGGTTTGAAAGAGGTTTGCGGCAGGAGATTCGTACCCTAATTATAGCTATAGCAAAATGGACCAACATCTTCCAATTGGTAGAAATTGTTTTGCAAGTAAAGTAG
Coding sequence (CDS)
ATGACTGAGTATGAGAGGAAGTATACTGAGCTCTCCCCGTATACTAAGGCTATAGTAGCATTTGAGAGTGATAGATGCAAGAGGTTTGAAAGAGGTTTGCGGCAGGAGATTCGTACCCTAATTATAGCTATAGCAAAATGGACCAACATCTTCCAATTGGTAGAAATTGTTTTGCAAGTAAAGTAG
Protein sequence
MTEYERKYTELSPYTKAIVAFESDRCKRFERGLRQEIRTLIIAIAKWTNIFQLVEIVLQVK*
Homology
BLAST of CsaV3_6G009820.1 vs. NCBI nr
Match:
KAE8646811.1 (hypothetical protein Csa_023598 [Cucumis sativus])
HSP 1 Score: 121.7 bits (304), Expect = 2.2e-24
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 0
Query: 1 MTEYERKYTELSPYTKAIVAFESDRCKRFERGLRQEIRTLIIAIAKWTNIFQLVEIVLQV 60
MTEYERKYTELSPYTKAIVAFESDRCKRFERGLRQEIRTLIIAIAKWTNIFQLVEIVLQV
Sbjct: 1 MTEYERKYTELSPYTKAIVAFESDRCKRFERGLRQEIRTLIIAIAKWTNIFQLVEIVLQV 60
Query: 61 K 62
K
Sbjct: 61 K 61
BLAST of CsaV3_6G009820.1 vs. NCBI nr
Match:
KAA0056398.1 (putative integrase, identical [Cucumis melo var. makuwa])
HSP 1 Score: 90.1 bits (222), Expect = 7.2e-15
Identity = 44/61 (72.13%), Postives = 52/61 (85.25%), Query Frame = 0
Query: 1 MTEYERKYTELSPYTKAIVAFESDRCKRFERGLRQEIRTLIIAIAKWTNIFQLVEIVLQV 60
+ +YERKYTELS Y IVAFESD+C+RFERGLR EIRTLI AIAKWTN+ +LVE VL+V
Sbjct: 279 VAKYERKYTELSRYADVIVAFESDKCQRFERGLRFEIRTLITAIAKWTNVSELVETVLRV 338
Query: 61 K 62
+
Sbjct: 339 E 339
BLAST of CsaV3_6G009820.1 vs. NCBI nr
Match:
TYK29120.1 (hypothetical protein E5676_scaffold120G002610 [Cucumis melo var. makuwa])
HSP 1 Score: 90.1 bits (222), Expect = 7.2e-15
Identity = 44/61 (72.13%), Postives = 52/61 (85.25%), Query Frame = 0
Query: 1 MTEYERKYTELSPYTKAIVAFESDRCKRFERGLRQEIRTLIIAIAKWTNIFQLVEIVLQV 60
+ +YERKYTELS Y IVAFESD+C+RFERGLR EIRTLI AIAKWTN+ +LVE VL+V
Sbjct: 279 VAKYERKYTELSRYADVIVAFESDKCQRFERGLRFEIRTLITAIAKWTNVSELVETVLRV 338
Query: 61 K 62
+
Sbjct: 339 E 339
BLAST of CsaV3_6G009820.1 vs. NCBI nr
Match:
KAA0062270.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])
HSP 1 Score: 88.2 bits (217), Expect = 2.7e-14
Identity = 44/61 (72.13%), Postives = 49/61 (80.33%), Query Frame = 0
Query: 1 MTEYERKYTELSPYTKAIVAFESDRCKRFERGLRQEIRTLIIAIAKWTNIFQLVEIVLQV 60
+ EYERKYTELS Y IVA ESDRC+RFERGLR EIRTL+ AIAKWTN QLVE L+V
Sbjct: 131 VAEYERKYTELSRYADVIVASESDRCRRFERGLRFEIRTLVTAIAKWTNFSQLVETALRV 190
Query: 61 K 62
+
Sbjct: 191 E 191
BLAST of CsaV3_6G009820.1 vs. NCBI nr
Match:
TYK02171.1 (uncharacterized protein E5676_scaffold388G00680 [Cucumis melo var. makuwa])
HSP 1 Score: 88.2 bits (217), Expect = 2.7e-14
Identity = 43/61 (70.49%), Postives = 49/61 (80.33%), Query Frame = 0
Query: 1 MTEYERKYTELSPYTKAIVAFESDRCKRFERGLRQEIRTLIIAIAKWTNIFQLVEIVLQV 60
+ EYERKYTELS Y I+AFESDRC+RFERGLR EIRT + AIAKWTN QLVE L+V
Sbjct: 172 VAEYERKYTELSRYADVIIAFESDRCRRFERGLRFEIRTPVTAIAKWTNFSQLVETALRV 231
Query: 61 K 62
+
Sbjct: 232 E 232
BLAST of CsaV3_6G009820.1 vs. ExPASy TrEMBL
Match:
A0A5A7UMS5 (Putative integrase, identical OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold186G001470 PE=4 SV=1)
HSP 1 Score: 90.1 bits (222), Expect = 3.5e-15
Identity = 44/61 (72.13%), Postives = 52/61 (85.25%), Query Frame = 0
Query: 1 MTEYERKYTELSPYTKAIVAFESDRCKRFERGLRQEIRTLIIAIAKWTNIFQLVEIVLQV 60
+ +YERKYTELS Y IVAFESD+C+RFERGLR EIRTLI AIAKWTN+ +LVE VL+V
Sbjct: 279 VAKYERKYTELSRYADVIVAFESDKCQRFERGLRFEIRTLITAIAKWTNVSELVETVLRV 338
Query: 61 K 62
+
Sbjct: 339 E 339
BLAST of CsaV3_6G009820.1 vs. ExPASy TrEMBL
Match:
A0A5D3E0T4 (CCHC-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold120G002610 PE=4 SV=1)
HSP 1 Score: 90.1 bits (222), Expect = 3.5e-15
Identity = 44/61 (72.13%), Postives = 52/61 (85.25%), Query Frame = 0
Query: 1 MTEYERKYTELSPYTKAIVAFESDRCKRFERGLRQEIRTLIIAIAKWTNIFQLVEIVLQV 60
+ +YERKYTELS Y IVAFESD+C+RFERGLR EIRTLI AIAKWTN+ +LVE VL+V
Sbjct: 279 VAKYERKYTELSRYADVIVAFESDKCQRFERGLRFEIRTLITAIAKWTNVSELVETVLRV 338
Query: 61 K 62
+
Sbjct: 339 E 339
BLAST of CsaV3_6G009820.1 vs. ExPASy TrEMBL
Match:
A0A5D3BR01 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold388G00680 PE=4 SV=1)
HSP 1 Score: 88.2 bits (217), Expect = 1.3e-14
Identity = 43/61 (70.49%), Postives = 49/61 (80.33%), Query Frame = 0
Query: 1 MTEYERKYTELSPYTKAIVAFESDRCKRFERGLRQEIRTLIIAIAKWTNIFQLVEIVLQV 60
+ EYERKYTELS Y I+AFESDRC+RFERGLR EIRT + AIAKWTN QLVE L+V
Sbjct: 172 VAEYERKYTELSRYADVIIAFESDRCRRFERGLRFEIRTPVTAIAKWTNFSQLVETALRV 231
Query: 61 K 62
+
Sbjct: 232 E 232
BLAST of CsaV3_6G009820.1 vs. ExPASy TrEMBL
Match:
A0A5A7V4W9 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold679G00400 PE=4 SV=1)
HSP 1 Score: 88.2 bits (217), Expect = 1.3e-14
Identity = 44/61 (72.13%), Postives = 49/61 (80.33%), Query Frame = 0
Query: 1 MTEYERKYTELSPYTKAIVAFESDRCKRFERGLRQEIRTLIIAIAKWTNIFQLVEIVLQV 60
+ EYERKYTELS Y IVA ESDRC+RFERGLR EIRTL+ AIAKWTN QLVE L+V
Sbjct: 131 VAEYERKYTELSRYADVIVASESDRCRRFERGLRFEIRTLVTAIAKWTNFSQLVETALRV 190
Query: 61 K 62
+
Sbjct: 191 E 191
BLAST of CsaV3_6G009820.1 vs. ExPASy TrEMBL
Match:
A0A5D3C7J1 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold594G00290 PE=4 SV=1)
HSP 1 Score: 87.4 bits (215), Expect = 2.2e-14
Identity = 43/61 (70.49%), Postives = 49/61 (80.33%), Query Frame = 0
Query: 1 MTEYERKYTELSPYTKAIVAFESDRCKRFERGLRQEIRTLIIAIAKWTNIFQLVEIVLQV 60
+ EYERKYTELS Y IVAFESDRC+RFERGLR EIR+ + AIAKWTN QLVE L+V
Sbjct: 393 VVEYERKYTELSRYANVIVAFESDRCRRFERGLRFEIRSPVTAIAKWTNFSQLVETALRV 452
Query: 61 K 62
+
Sbjct: 453 E 453
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
KAE8646811.1 | 2.2e-24 | 100.00 | hypothetical protein Csa_023598 [Cucumis sativus] | [more] |
KAA0056398.1 | 7.2e-15 | 72.13 | putative integrase, identical [Cucumis melo var. makuwa] | [more] |
TYK29120.1 | 7.2e-15 | 72.13 | hypothetical protein E5676_scaffold120G002610 [Cucumis melo var. makuwa] | [more] |
KAA0062270.1 | 2.7e-14 | 72.13 | DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] | [more] |
TYK02171.1 | 2.7e-14 | 70.49 | uncharacterized protein E5676_scaffold388G00680 [Cucumis melo var. makuwa] | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5A7UMS5 | 3.5e-15 | 72.13 | Putative integrase, identical OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc... | [more] |
A0A5D3E0T4 | 3.5e-15 | 72.13 | CCHC-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5... | [more] |
A0A5D3BR01 | 1.3e-14 | 70.49 | Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ... | [more] |
A0A5A7V4W9 | 1.3e-14 | 72.13 | Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold67... | [more] |
A0A5D3C7J1 | 2.2e-14 | 70.49 | Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold59... | [more] |
Match Name | E-value | Identity | Description | |