CsaV3_6G009820 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_6G009820
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Reverse transcriptase
Location	chr6: 7980132 .. 7980390 (-)
RNA-Seq Expression	CsaV3_6G009820
Synteny	CsaV3_6G009820

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACTGAGTATGAGAGGAAGTATACTGAGCTCTCCCCGTATACTAAGGCTATAGTAGCATTTGAGAGTGATAGATGCAAGAGGTTTGAAAGAGGTTTGCGGCAGGAGATTCGTACCCTAATTATAGCTATAGCAAAATGGACCAACATCTTCCAATTGGTAGAAATTGTTTTGCAAGTAAAGTAGAGTATAGAAGGACCAAAGCTAGTGTTGGAGCCTAGTAAAGGGGCCAGTTAGTGGCTTTAGGACTGGAAATTAG

mRNA sequence

ATGACTGAGTATGAGAGGAAGTATACTGAGCTCTCCCCGTATACTAAGGCTATAGTAGCATTTGAGAGTGATAGATGCAAGAGGTTTGAAAGAGGTTTGCGGCAGGAGATTCGTACCCTAATTATAGCTATAGCAAAATGGACCAACATCTTCCAATTGGTAGAAATTGTTTTGCAAGTAAAGTAG

Coding sequence (CDS)

ATGACTGAGTATGAGAGGAAGTATACTGAGCTCTCCCCGTATACTAAGGCTATAGTAGCATTTGAGAGTGATAGATGCAAGAGGTTTGAAAGAGGTTTGCGGCAGGAGATTCGTACCCTAATTATAGCTATAGCAAAATGGACCAACATCTTCCAATTGGTAGAAATTGTTTTGCAAGTAAAGTAG

Protein sequence

MTEYERKYTELSPYTKAIVAFESDRCKRFERGLRQEIRTLIIAIAKWTNIFQLVEIVLQVK*

Homology

[Close]

BLAST of CsaV3_6G009820 vs. NCBI nr
Match: KAE8646811.1 (hypothetical protein Csa_023598 [Cucumis sativus])

HSP 1 Score: 121.7 bits (304), Expect = 2.2e-24
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 0


Query: 1  MTEYERKYTELSPYTKAIVAFESDRCKRFERGLRQEIRTLIIAIAKWTNIFQLVEIVLQV 60
          MTEYERKYTELSPYTKAIVAFESDRCKRFERGLRQEIRTLIIAIAKWTNIFQLVEIVLQV
Sbjct: 1  MTEYERKYTELSPYTKAIVAFESDRCKRFERGLRQEIRTLIIAIAKWTNIFQLVEIVLQV 60

Query: 61 K 62
          K
Sbjct: 61 K 61

[Close]

BLAST of CsaV3_6G009820 vs. NCBI nr
Match: KAA0056398.1 (putative integrase, identical [Cucumis melo var. makuwa])

HSP 1 Score: 90.1 bits (222), Expect = 7.2e-15
Identity = 44/61 (72.13%), Postives = 52/61 (85.25%), Query Frame = 0


Query: 1   MTEYERKYTELSPYTKAIVAFESDRCKRFERGLRQEIRTLIIAIAKWTNIFQLVEIVLQV 60
           + +YERKYTELS Y   IVAFESD+C+RFERGLR EIRTLI AIAKWTN+ +LVE VL+V
Sbjct: 279 VAKYERKYTELSRYADVIVAFESDKCQRFERGLRFEIRTLITAIAKWTNVSELVETVLRV 338

Query: 61  K 62
           +
Sbjct: 339 E 339

[Close]

BLAST of CsaV3_6G009820 vs. NCBI nr
Match: TYK29120.1 (hypothetical protein E5676_scaffold120G002610 [Cucumis melo var. makuwa])

HSP 1 Score: 90.1 bits (222), Expect = 7.2e-15
Identity = 44/61 (72.13%), Postives = 52/61 (85.25%), Query Frame = 0


Query: 1   MTEYERKYTELSPYTKAIVAFESDRCKRFERGLRQEIRTLIIAIAKWTNIFQLVEIVLQV 60
           + +YERKYTELS Y   IVAFESD+C+RFERGLR EIRTLI AIAKWTN+ +LVE VL+V
Sbjct: 279 VAKYERKYTELSRYADVIVAFESDKCQRFERGLRFEIRTLITAIAKWTNVSELVETVLRV 338

Query: 61  K 62
           +
Sbjct: 339 E 339

[Close]

BLAST of CsaV3_6G009820 vs. NCBI nr
Match: KAA0062270.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 88.2 bits (217), Expect = 2.7e-14
Identity = 44/61 (72.13%), Postives = 49/61 (80.33%), Query Frame = 0


Query: 1   MTEYERKYTELSPYTKAIVAFESDRCKRFERGLRQEIRTLIIAIAKWTNIFQLVEIVLQV 60
           + EYERKYTELS Y   IVA ESDRC+RFERGLR EIRTL+ AIAKWTN  QLVE  L+V
Sbjct: 131 VAEYERKYTELSRYADVIVASESDRCRRFERGLRFEIRTLVTAIAKWTNFSQLVETALRV 190

Query: 61  K 62
           +
Sbjct: 191 E 191

[Close]

BLAST of CsaV3_6G009820 vs. NCBI nr
Match: TYK02171.1 (uncharacterized protein E5676_scaffold388G00680 [Cucumis melo var. makuwa])

HSP 1 Score: 88.2 bits (217), Expect = 2.7e-14
Identity = 43/61 (70.49%), Postives = 49/61 (80.33%), Query Frame = 0


Query: 1   MTEYERKYTELSPYTKAIVAFESDRCKRFERGLRQEIRTLIIAIAKWTNIFQLVEIVLQV 60
           + EYERKYTELS Y   I+AFESDRC+RFERGLR EIRT + AIAKWTN  QLVE  L+V
Sbjct: 172 VAEYERKYTELSRYADVIIAFESDRCRRFERGLRFEIRTPVTAIAKWTNFSQLVETALRV 231

Query: 61  K 62
           +
Sbjct: 232 E 232

[Close]

BLAST of CsaV3_6G009820 vs. ExPASy TrEMBL
Match: A0A5A7UMS5 (Putative integrase, identical OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold186G001470 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 3.5e-15
Identity = 44/61 (72.13%), Postives = 52/61 (85.25%), Query Frame = 0


Query: 1   MTEYERKYTELSPYTKAIVAFESDRCKRFERGLRQEIRTLIIAIAKWTNIFQLVEIVLQV 60
           + +YERKYTELS Y   IVAFESD+C+RFERGLR EIRTLI AIAKWTN+ +LVE VL+V
Sbjct: 279 VAKYERKYTELSRYADVIVAFESDKCQRFERGLRFEIRTLITAIAKWTNVSELVETVLRV 338

Query: 61  K 62
           +
Sbjct: 339 E 339

[Close]

BLAST of CsaV3_6G009820 vs. ExPASy TrEMBL
Match: A0A5D3E0T4 (CCHC-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold120G002610 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 3.5e-15
Identity = 44/61 (72.13%), Postives = 52/61 (85.25%), Query Frame = 0


Query: 1   MTEYERKYTELSPYTKAIVAFESDRCKRFERGLRQEIRTLIIAIAKWTNIFQLVEIVLQV 60
           + +YERKYTELS Y   IVAFESD+C+RFERGLR EIRTLI AIAKWTN+ +LVE VL+V
Sbjct: 279 VAKYERKYTELSRYADVIVAFESDKCQRFERGLRFEIRTLITAIAKWTNVSELVETVLRV 338

Query: 61  K 62
           +
Sbjct: 339 E 339

[Close]

BLAST of CsaV3_6G009820 vs. ExPASy TrEMBL
Match: A0A5D3BR01 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold388G00680 PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 1.3e-14
Identity = 43/61 (70.49%), Postives = 49/61 (80.33%), Query Frame = 0


Query: 1   MTEYERKYTELSPYTKAIVAFESDRCKRFERGLRQEIRTLIIAIAKWTNIFQLVEIVLQV 60
           + EYERKYTELS Y   I+AFESDRC+RFERGLR EIRT + AIAKWTN  QLVE  L+V
Sbjct: 172 VAEYERKYTELSRYADVIIAFESDRCRRFERGLRFEIRTPVTAIAKWTNFSQLVETALRV 231

Query: 61  K 62
           +
Sbjct: 232 E 232

[Close]

BLAST of CsaV3_6G009820 vs. ExPASy TrEMBL
Match: A0A5A7V4W9 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold679G00400 PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 1.3e-14
Identity = 44/61 (72.13%), Postives = 49/61 (80.33%), Query Frame = 0


Query: 1   MTEYERKYTELSPYTKAIVAFESDRCKRFERGLRQEIRTLIIAIAKWTNIFQLVEIVLQV 60
           + EYERKYTELS Y   IVA ESDRC+RFERGLR EIRTL+ AIAKWTN  QLVE  L+V
Sbjct: 131 VAEYERKYTELSRYADVIVASESDRCRRFERGLRFEIRTLVTAIAKWTNFSQLVETALRV 190

Query: 61  K 62
           +
Sbjct: 191 E 191

[Close]

BLAST of CsaV3_6G009820 vs. ExPASy TrEMBL
Match: A0A5D3C7J1 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold594G00290 PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 2.2e-14
Identity = 43/61 (70.49%), Postives = 49/61 (80.33%), Query Frame = 0


Query: 1   MTEYERKYTELSPYTKAIVAFESDRCKRFERGLRQEIRTLIIAIAKWTNIFQLVEIVLQV 60
           + EYERKYTELS Y   IVAFESDRC+RFERGLR EIR+ + AIAKWTN  QLVE  L+V
Sbjct: 393 VVEYERKYTELSRYANVIVAFESDRCRRFERGLRFEIRSPVTAIAKWTNFSQLVETALRV 452

Query: 61  K 62
           +
Sbjct: 453 E 453

The following BLAST results are available for this feature:

BLAST of CsaV3_6G009820 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8646811.1	2.2e-24	100.00	hypothetical protein Csa_023598 [Cucumis sativus]	[more]
KAA0056398.1	7.2e-15	72.13	putative integrase, identical [Cucumis melo var. makuwa]	[more]
TYK29120.1	7.2e-15	72.13	hypothetical protein E5676_scaffold120G002610 [Cucumis melo var. makuwa]	[more]
KAA0062270.1	2.7e-14	72.13	DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]	[more]
TYK02171.1	2.7e-14	70.49	uncharacterized protein E5676_scaffold388G00680 [Cucumis melo var. makuwa]	[more]

BLAST of CsaV3_6G009820 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_6G009820 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UMS5	3.5e-15	72.13	Putative integrase, identical OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc...	[more]
A0A5D3E0T4	3.5e-15	72.13	CCHC-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5...	[more]
A0A5D3BR01	1.3e-14	70.49	Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A5A7V4W9	1.3e-14	72.13	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold67...	[more]
A0A5D3C7J1	2.2e-14	70.49	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold59...	[more]

BLAST of CsaV3_6G009820 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_6G009820.1	CsaV3_6G009820.1	mRNA