Cp4.1LG20g08380.1 (mRNA) Cucurbita pepo (MU‐CU‐16) v4.1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.AGTTAAAATGTTTTGTGGTAAAAAGAAAAGAAAAAAAAAAGAAACAAAAAGTTTCTAGAACTGTTTTCACACACAGACACACAAAAGATTCGACATTAAATGAGGGGTGTAATTGTAAATTCACACAAAAAGACCTCCCCGTCCTCCTCCTCCGTTAAGTACTCCTCCCATTGCCTCTTCCAGATTGAACCAAAAAAATGGCTAAACCCGCCGTCCTCCTCTGCCTTGTGTCTCTCATCTCAGCAATGTGGACGGCCGCTGCTAGAATTCCCGGCGCCTACTCCGGTGGCCCATGGCAGACCGCTCACGCCACCTTCTACGGCGGCTCCGACGCATCCGGCACAATGGGTAGGCTCGAAAATTGAAACAAACAAACAAATGGGTTGAGATTTGGGTTTTGATTTTGAATGGAAAGCTATTTAATCATAAATTATAATTTAACATATATGTCAATTTAATTTTTTTATTATAGACAAATATCTAGATATTCGACTCTACTTCAGATTAAATTTGGTGCTAGTTTTAGCAACATTCTCACTTGGGTCGGTGTGCACTCAGGTGGGGCTTGTGGGTATGGGAATTTGTACAGCCAAGGGTACGGGGTGAACACGGCGGCGCTGAGTACGGCGCTGTTCAACAATGGGCTGAGCTGTGGCGCGTGTTTCGAGATCAAATGTGCGAATGACCCGAGATGGTGCCATTCGGGTAGCCCGTCGATTGTCATAACGGCCACCAACTTCTGCCCGCCCAACTTTGCTCTGCCCAGTGACAATGGCGGCTGGTGTAACCCTCCTCGCCCCCATTTCGATTTGGCCATGCCTATGTTTCTCAAGATCGCTGAATATCGCGCCGGTATCGTCCCCGTCGCCTACCGCCGGTCAGCCTCTTTCTTCCTCTGCCTTTTATTTCTGTTTTCCTTTAAATTACCATTTTACCCCTCTTTTAATTTAATTTATTTTATTTTTAAAAAAAATTTGTAGTTAGTTATATTTAAAATATAGGTAAATTATCTATATTTCGGGTAGCATACACACAATTTACCCTAAATTGATTAATATCGTACTCGATTTTCTAATTTATATATCAATCCATACTTTAAAATTTTATAAATTATCAATTTTAAATTTTTTTTTTTTTTTTTATAAATAACTAAATATATTGAAAAAAGTAGGATCGTAAATAATTCTCTTATAGACGATCAGAACTTAATTCAATGTTCGTAGCTTCCTGTGAATACACCTAAGAAATTGGAATCTGATTATCAATTATAGGAGGTTTTTAGATTAAGTGTGACTTTTGATACCTGTATTAGCGGCAATTAATTTTCTAGCATGCTAAACGATACCCGTTGTAGCTATAGTACATTACTAGAATCCTAAAGAACGAGATTAAAATCGTATACTATAGGGGTTGTCGACGTAGGCAAGAGAGAAGTGAAGTTGGTTAA AGTTAAAATGTTTTGTGGTAAAAAGAAAAGAAAAAAAAAAGAAACAAAAAGTTTCTAGAACTGTTTTCACACACAGACACACAAAAGATTCGACATTAAATGAGGGGTGTAATTGTAAATTCACACAAAAAGACCTCCCCGTCCTCCTCCTCCGTTAAGTACTCCTCCCATTGCCTCTTCCAGATTGAACCAAAAAAATGGCTAAACCCGCCGTCCTCCTCTGCCTTGTGTCTCTCATCTCAGCAATGTGGACGGCCGCTGCTAGAATTCCCGGCGCCTACTCCGGTGGCCCATGGCAGACCGCTCACGCCACCTTCTACGGCGGCTCCGACGCATCCGGCACAATGGGTGGGGCTTGTGGGTATGGGAATTTGTACAGCCAAGGGTACGGGGTGAACACGGCGGCGCTGAGTACGGCGCTGTTCAACAATGGGCTGAGCTGTGGCGCGTGTTTCGAGATCAAATGTGCGAATGACCCGAGATGGTGCCATTCGGGTAGCCCGTCGATTGTCATAACGGCCACCAACTTCTGCCCGCCCAACTTTGCTCTGCCCAGTGACAATGGCGGCTGGTGTAACCCTCCTCGCCCCCATTTCGATTTGGCCATGCCTATGTTTCTCAAGATCGCTGAATATCGCGCCGGTATCGTCCCCGTCGCCTACCGCCGGCAAGAGAGAAGTGAAGTTGGTTAA ATGGCTAAACCCGCCGTCCTCCTCTGCCTTGTGTCTCTCATCTCAGCAATGTGGACGGCCGCTGCTAGAATTCCCGGCGCCTACTCCGGTGGCCCATGGCAGACCGCTCACGCCACCTTCTACGGCGGCTCCGACGCATCCGGCACAATGGGTGGGGCTTGTGGGTATGGGAATTTGTACAGCCAAGGGTACGGGGTGAACACGGCGGCGCTGAGTACGGCGCTGTTCAACAATGGGCTGAGCTGTGGCGCGTGTTTCGAGATCAAATGTGCGAATGACCCGAGATGGTGCCATTCGGGTAGCCCGTCGATTGTCATAACGGCCACCAACTTCTGCCCGCCCAACTTTGCTCTGCCCAGTGACAATGGCGGCTGGTGTAACCCTCCTCGCCCCCATTTCGATTTGGCCATGCCTATGTTTCTCAAGATCGCTGAATATCGCGCCGGTATCGTCCCCGTCGCCTACCGCCGGCAAGAGAGAAGTGAAGTTGGTTAA MAKPAVLLCLVSLISAMWTAAARIPGAYSGGPWQTAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFEIKCANDPRWCHSGSPSIVITATNFCPPNFALPSDNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVAYRRQERSEVG Homology
BLAST of Cp4.1LG20g08380.1 vs. ExPASy Swiss-Prot
Match: Q38865 (Expansin-A6 OS=Arabidopsis thaliana OX=3702 GN=EXPA6 PE=2 SV=2) HSP 1 Score: 275.4 bits (703), Expect = 4.2e-73 Identity = 129/157 (82.17%), Postives = 143/157 (91.08%), Query Frame = 0
BLAST of Cp4.1LG20g08380.1 vs. ExPASy Swiss-Prot
Match: O48818 (Expansin-A4 OS=Arabidopsis thaliana OX=3702 GN=EXPA4 PE=1 SV=1) HSP 1 Score: 270.4 bits (690), Expect = 1.3e-71 Identity = 128/155 (82.58%), Postives = 136/155 (87.74%), Query Frame = 0
BLAST of Cp4.1LG20g08380.1 vs. ExPASy Swiss-Prot
Match: Q852A1 (Expansin-A7 OS=Oryza sativa subsp. japonica OX=39947 GN=EXPA7 PE=2 SV=1) HSP 1 Score: 267.7 bits (683), Expect = 8.7e-71 Identity = 128/158 (81.01%), Postives = 138/158 (87.34%), Query Frame = 0
BLAST of Cp4.1LG20g08380.1 vs. ExPASy Swiss-Prot
Match: O80932 (Expansin-A3 OS=Arabidopsis thaliana OX=3702 GN=EXPA3 PE=2 SV=1) HSP 1 Score: 263.5 bits (672), Expect = 1.6e-69 Identity = 125/158 (79.11%), Postives = 135/158 (85.44%), Query Frame = 0
BLAST of Cp4.1LG20g08380.1 vs. ExPASy Swiss-Prot
Match: Q9M2S9 (Expansin-A16 OS=Arabidopsis thaliana OX=3702 GN=EXPA16 PE=2 SV=1) HSP 1 Score: 258.1 bits (658), Expect = 6.9e-68 Identity = 117/154 (75.97%), Postives = 131/154 (85.06%), Query Frame = 0
BLAST of Cp4.1LG20g08380.1 vs. NCBI nr
Match: XP_022970561.1 (expansin-A4-like [Cucurbita maxima]) HSP 1 Score: 329 bits (843), Expect = 3.72e-112 Identity = 157/157 (100.00%), Postives = 157/157 (100.00%), Query Frame = 0
BLAST of Cp4.1LG20g08380.1 vs. NCBI nr
Match: XP_023519655.1 (expansin-A4-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 329 bits (843), Expect = 3.72e-112 Identity = 157/157 (100.00%), Postives = 157/157 (100.00%), Query Frame = 0
BLAST of Cp4.1LG20g08380.1 vs. NCBI nr
Match: XP_022964681.1 (expansin-A4-like [Cucurbita moschata]) HSP 1 Score: 323 bits (828), Expect = 7.15e-110 Identity = 154/157 (98.09%), Postives = 155/157 (98.73%), Query Frame = 0
BLAST of Cp4.1LG20g08380.1 vs. NCBI nr
Match: KAG6583425.1 (Expansin-A4, partial [Cucurbita argyrosperma subsp. sororia] >KAG7019187.1 Expansin-A4, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 321 bits (822), Expect = 5.86e-109 Identity = 152/157 (96.82%), Postives = 155/157 (98.73%), Query Frame = 0
BLAST of Cp4.1LG20g08380.1 vs. NCBI nr
Match: XP_038895721.1 (expansin-A4-like [Benincasa hispida]) HSP 1 Score: 317 bits (811), Expect = 2.77e-107 Identity = 149/157 (94.90%), Postives = 153/157 (97.45%), Query Frame = 0
BLAST of Cp4.1LG20g08380.1 vs. ExPASy TrEMBL
Match: A0A6J1I0X5 (Expansin OS=Cucurbita maxima OX=3661 GN=LOC111469501 PE=3 SV=1) HSP 1 Score: 329 bits (843), Expect = 1.80e-112 Identity = 157/157 (100.00%), Postives = 157/157 (100.00%), Query Frame = 0
BLAST of Cp4.1LG20g08380.1 vs. ExPASy TrEMBL
Match: A0A6J1HJM3 (Expansin OS=Cucurbita moschata OX=3662 GN=LOC111464689 PE=3 SV=1) HSP 1 Score: 323 bits (828), Expect = 3.46e-110 Identity = 154/157 (98.09%), Postives = 155/157 (98.73%), Query Frame = 0
BLAST of Cp4.1LG20g08380.1 vs. ExPASy TrEMBL
Match: A0A515MEM7 (Expansin OS=Luffa aegyptiaca OX=3670 PE=2 SV=1) HSP 1 Score: 313 bits (803), Expect = 2.21e-106 Identity = 148/157 (94.27%), Postives = 152/157 (96.82%), Query Frame = 0
BLAST of Cp4.1LG20g08380.1 vs. ExPASy TrEMBL
Match: Q8W5A7 (Expansin OS=Cucumis sativus OX=3659 PE=2 SV=1) HSP 1 Score: 313 bits (801), Expect = 4.46e-106 Identity = 147/157 (93.63%), Postives = 151/157 (96.18%), Query Frame = 0
BLAST of Cp4.1LG20g08380.1 vs. ExPASy TrEMBL
Match: A0A0A0LVC5 (Expansin OS=Cucumis sativus OX=3659 GN=Csa_1G522540 PE=3 SV=1) HSP 1 Score: 313 bits (801), Expect = 4.46e-106 Identity = 147/157 (93.63%), Postives = 151/157 (96.18%), Query Frame = 0
BLAST of Cp4.1LG20g08380.1 vs. TAIR 10
Match: AT2G28950.1 (expansin A6 ) HSP 1 Score: 275.4 bits (703), Expect = 3.0e-74 Identity = 129/157 (82.17%), Postives = 143/157 (91.08%), Query Frame = 0
BLAST of Cp4.1LG20g08380.1 vs. TAIR 10
Match: AT2G39700.1 (expansin A4 ) HSP 1 Score: 270.4 bits (690), Expect = 9.5e-73 Identity = 128/155 (82.58%), Postives = 136/155 (87.74%), Query Frame = 0
BLAST of Cp4.1LG20g08380.1 vs. TAIR 10
Match: AT2G37640.1 (Barwin-like endoglucanases superfamily protein ) HSP 1 Score: 263.5 bits (672), Expect = 1.2e-70 Identity = 125/158 (79.11%), Postives = 135/158 (85.44%), Query Frame = 0
BLAST of Cp4.1LG20g08380.1 vs. TAIR 10
Match: AT3G55500.1 (expansin A16 ) HSP 1 Score: 258.1 bits (658), Expect = 4.9e-69 Identity = 117/154 (75.97%), Postives = 131/154 (85.06%), Query Frame = 0
BLAST of Cp4.1LG20g08380.1 vs. TAIR 10
Match: AT5G02260.1 (expansin A9 ) HSP 1 Score: 253.4 bits (646), Expect = 1.2e-67 Identity = 119/157 (75.80%), Postives = 134/157 (85.35%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
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