Cp4.1LG15g08030.1 (mRNA) Cucurbita pepo (MU‐CU‐16) v4.1
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGACGGTGTTAAGAGTTGGCGCCTTTAAATCTCGGCGTCAACGTTACGTCTCTCTCATTTTTTATGTTCTTCAGTTTCTTCTTCTTCTTCTTCTTCGATCTCACATTTCGTTCTCGTTCTTTTTTTTTTTTATTGTTTCTGATAATTTTCCGTTGGAGCTCTGTGATTTTGCGGTACGAAGTTTCATATCCCTAAATTCTGCGTACTCCCTGTTACTGGCAACCTTCTTCTGGATTCCCGTGCCTCTCTGAATCGAAGCGACTAATTCCTGTTCGAAATTTGGTACGCTTTGAACTTGAGGATTTTGAATGTTGAACTTGTGTTTTCTTCTTCTGCGGAATAATTATCGGCTCATGTCTGATTCTTGACAGAATAGGGTTTTTTTCCTTTCGAATTGAAGCATTAGTTTTCATCTTAACGAATTTCTAACAAAATTTCATCGGAAGAAGATTGGATCAGTCATTTCGTGTTCTAATTGCATATTCACTTGATTTCTGTGTGATTAGCTTTTGAAATCCGTTTTAGATTGTTGGAAATATTTTAGAAAACTGGTTTAGATATGGATAAACATGTTTAAGAAGAGGTAATTTAGTTTAGAATCGTATGAGAGTGACTTCGAACAGAATTTTGGATAGCTATCCTACTTTTTTTATTCAAAATTTTTGTTGAATGTTCTAAGAGATTTCTTGTTGGAGTAGTTTTAAAATGTAGTATTTTTTAAAGATTGAACAAAATTCAAAAGAATTTTTTATAATTTATGATGAACAGTTCTAATCTTATGTCTTTATCAGCTGATTCATGCGCCTGTACTCAAGATTAGCTTGAGCCGACACTACCATGTTTGTTTAATTAATTTTCGGTATAGCTCAAGATTTATTTATTTTGGATCTGGATATGGATAGTTTCTAGCCCCAAAAAACTTTCCAGAAGGTCAACTTGCAAATAAGATTTAAATATCTGATTGGCCTGCAGCATTAACCAAGGGTTTCTCTTTATAATATTCTGAAAGCACATAACTCTACCTCTTATCTCCTTGCTCTTATCTTTCCTTGGGATTCAAGGTAATGATTTTTGTAATCTGAGAGAACCACAACAAGTTCATATCTGCATGTAAACATATATTTTCTCTGTTTCTTCAAAGATCTTGTGGTTGTTCGATCTTTCGATCCAATATTGATCTAAGTTTTTATGATTTGGTAGTTTAGGCTTCTCAGAAGGGTTGTGTTACAACAGAGCATTTGGAGATGGAGATTAACTCATTTGGAGAGAACAAGTCTTGGAAGTCTGTTTTGGATGCCATGGCTGACACTCATGGTGATGCCTCTGGGCTATTCGACTGTAACATATGCTTAGAGACTGTGAAAGATCCTGTTGTTACACTTTGTGGCCATCTCTTTTGCTGGCCCTGCCTTTACAAATGGCTTCACTTTCAGGACAGCTCTAAAGAAAAACATGGCCGGCGACTCCAGCAATGTCCAGTTTGTAAGGCAGAAGTTTCTGATGCTACTCTAGTGCCACTCTATGGCAAAGGTGGAACTCAAGACCCGTTCGAAAGCAAGAATTCGCAGCTTGGAATCGTCGTCCCTCGCAGGCCTAACGGTCCTGCTTGCTTTGAGTTACCAACGCCAACTTCTCACCCAACCTCTCACCCAGTTCCTCAATCTAGGCAAGGAAATTCCTCTAATCAATCAAACATTTGCTATGCTCAAGTGACAGGAGTGTTTGGAGAAGTGGTTTATGCAAGAATGTTCGGTGCAATAACGAATCTATATGCATATCCCAATGCATACCCTCTTGTGTGGAGCAGTAGCCCAAGGATCAGAAGGCATATTTTGCAGACTGATGAATCACTCAACAGAATCTGTATTTTTCTTTTCTGTTTCTTAGTTATCTGTCTTCTTTTGTTCTGAGCCATAGATTTTCCCTTTACTCTCTAATCCATTGTAAAAATTGAGTCAGAAGAACACTTAAATGATATGCAGATTGTGTTATGTAGGTGTGGCTGAGCGTTGGTGGTGATGTTGCCCCTTGGCTCGCCCTTATGTAGTTGATGTAAATAATAATTTTGTTTACCACCTCGTTTTATGGCCTTCTATTACTCTTTGTGAAATTTTACATCGGTTGGAGAGAAACAAAACATTCCTTATAAGAGTGTAGAAATCTCCCTCTAGCAAACGTGTTTTAAAACCTAGAAGTAGAAACTCAAAGAAGATAATATCTGCTGGCAGTGGGGTTGAGTTGTTACAAGTAATATTAGAGTCAATCACTAGGCGGTGTGCCAGCAAGGATATTGGGCCCCCAAGGAGGTGGATTGTGAGATCGCACATCGATTGAAGAGGGGAACGAAACATTCTTTATAAGAATGTGAAAACCTCTCCATAACAGCCACGTTTTAAAACCTTGAAGGAAAGCCTAGAAGAGAAAGCCCAAATAAGACAATATCGGCTAGCGGTGGACTCTTGGATTCGCCTATTCTACTAACAAAATAGAAAATGAAGAGGATTTGCAGTGGCAATCCAAATTTACATTTGAAATTCTTTAAGGACCCAAAACAAGTGGAATTTTACCAATCACGAGAAGAGCTGGTCTTGTGTTTCAACCATAGCCTCTGTCAACGATTTTATAGTGCTGAGACTTGCGATGAGCCTAAAAGAATTTTACCAATCACTACAAGTTGGTCTTAGTTCCCAGGATTTTGTGCACTTCTCCATCAACAGAAAAACCATCCATCTCCATCTGGTTTAGAATGTTGAGCACTGGTTTTCCACCTGCAATGGAAGTCCTCAGCGATCTGTAGTACATCTCCTTCGTTATCGATCCCGAGCTTCTGCATAGTTGTATCATTTCTTCCATTGTTTCTCCATCTCCTTGCTCTTCCAAGTAATTCAGACAGGCTTCCAAAATGTCTTGGTTTGGTTTCCAATCCTGCCTTCCAACTAACATAGCTCTCTTCAACATCTCAACTGCTTTGCTCATGAGCCCGTGTTCGACGTATCCCATAGCTAACACGCTCCACGTGCTAGCATATGGAGTTCTTCCCATCACTGCACGGTTAACGAGCGATTCCGCCTTATCAAAAAGACCTTTTCTGCAATAAGCAACCAGAAGTCGATTCAATACTCGAAAATCATAGAATGTGCACTTTGATTCCCACTCCTGGAAAATCCTTTCAGCCCCTTCAATATCATCAAGTTTCACTAGAGATGTGATCATTAAAGCATATGGCACATCTATTTGTTTAATTGTTGACTTGAACGTACTCCAAACCCTGTAAAGTTCGTCCTTACGACCTGCTCGTTCATAAAGCGACAGTAGAAACTCAAACGCCGATTTGTTCTTACGCGGTGGAATCTTCTCCTCCATTTTCTTCAGCATGGAGAGAGCCTCTGTTTCCAACCCAGCTGATAGATATCCACTAGCAGCAATTGAATAAATTCTCCAATCAGCTCTGAATTCAGAATTCTCCTCAATCCTTTTGAGGATCTTTTCCATACCAGAAATGTCTGCATTAGCAACATAAGCTGCACTAAGATTTCTAACAGTGTAGATATCTTGAGGTATTCCCTTCATTTCCATTTCTTGAATCAATAGATCAATCTTATGATGCTGCCCGACCTGAGCGTAGAGGTTAATTAGCACGTTATACGGAAACGACGTAGTAGCAAACCCCAAGTTTCTCATTTCTTGCATAATGGCTTCAGCTTTCTCAACTGATCTCTCTCGCACATAACTACAGAGAAGAGCGCCATAAGCATTAG ATGACGGCTTCTCAGAAGGGTTGTGTTACAACAGAGCATTTGGAGATGGAGATTAACTCATTTGGAGAGAACAAGTCTTGGAAGTCTGTTTTGGATGCCATGGCTGACACTCATGGTGATGCCTCTGGGCTATTCGACTGTAACATATGCTTAGAGACTGTGAAAGATCCTGTTGTTACACTTTGTGGCCATCTCTTTTGCTGGCCCTGCCTTTACAAATGGCTTCACTTTCAGGACAGCTCTAAAGAAAAACATGGCCGGCGACTCCAGCAATGTCCAGTTTGTAAGGCAGAAGTTTCTGATGCTACTCTAGTGCCACTCTATGGCAAAGGTGGAACTCAAGACCCGTTCGAAAGCAAGAATTCGCAGCTTGGAATCGTCGTCCCTCGCAGGCCTAACGGTCCTGCTTGCTTTGAGTTACCAACGCCAACTTCTCACCCAACCTCTCACCCAGTTCCTCAATCTAGGCAAGGAAATTCCTCTAATCAATCAAACATTTGCTATGCTCAAGTGACAGGAGTGTTTGGAGAAGTGGTTTATGCAAGAATGTTCGGTGCAATAACGAATCTATATGCATATCCCAATGCATACCCTCTTGTGTGGAGCAGTAGCCCAAGGATCAGAAGGCATATTTTGCAGACTGATGAATCACTCAACAGAATCTGTATTTTTCTTTTCTGTTTCTTAGTGTGGCTGAGCGTTGGTGGTGATGTTGCCCCTTGGCTCGCCCTTATGACCCAAAACAAGTGGAATTTTACCAATCACGAGAAGAGCTGGTCTTGTGTTTCAACCATAGCCTCTGTCAACGATTTTATAGTGCTGAGACTTGCGATGAGCCTAAAAGAATTTTACCAATCACTACAAGTTGGTCTTAGTTCCCAGGATTTTGTGCACTTCTCCATCAACAGAAAAACCATCCATCTCCATCTGATCAATCTTATGATGCTGCCCGACCTGAGCGTAGAGCTTTCTCAACTGATCTCTCTCGCACATAACTACAGAGAAGAGCGCCATAAGCATTAG ATGACGGCTTCTCAGAAGGGTTGTGTTACAACAGAGCATTTGGAGATGGAGATTAACTCATTTGGAGAGAACAAGTCTTGGAAGTCTGTTTTGGATGCCATGGCTGACACTCATGGTGATGCCTCTGGGCTATTCGACTGTAACATATGCTTAGAGACTGTGAAAGATCCTGTTGTTACACTTTGTGGCCATCTCTTTTGCTGGCCCTGCCTTTACAAATGGCTTCACTTTCAGGACAGCTCTAAAGAAAAACATGGCCGGCGACTCCAGCAATGTCCAGTTTGTAAGGCAGAAGTTTCTGATGCTACTCTAGTGCCACTCTATGGCAAAGGTGGAACTCAAGACCCGTTCGAAAGCAAGAATTCGCAGCTTGGAATCGTCGTCCCTCGCAGGCCTAACGGTCCTGCTTGCTTTGAGTTACCAACGCCAACTTCTCACCCAACCTCTCACCCAGTTCCTCAATCTAGGCAAGGAAATTCCTCTAATCAATCAAACATTTGCTATGCTCAAGTGACAGGAGTGTTTGGAGAAGTGGTTTATGCAAGAATGTTCGGTGCAATAACGAATCTATATGCATATCCCAATGCATACCCTCTTGTGTGGAGCAGTAGCCCAAGGATCAGAAGGCATATTTTGCAGACTGATGAATCACTCAACAGAATCTGTATTTTTCTTTTCTGTTTCTTAGTGTGGCTGAGCGTTGGTGGTGATGTTGCCCCTTGGCTCGCCCTTATGACCCAAAACAAGTGGAATTTTACCAATCACGAGAAGAGCTGGTCTTGTGTTTCAACCATAGCCTCTGTCAACGATTTTATAGTGCTGAGACTTGCGATGAGCCTAAAAGAATTTTACCAATCACTACAAGTTGGTCTTAGTTCCCAGGATTTTGTGCACTTCTCCATCAACAGAAAAACCATCCATCTCCATCTGATCAATCTTATGATGCTGCCCGACCTGAGCGTAGAGCTTTCTCAACTGATCTCTCTCGCACATAACTACAGAGAAGAGCGCCATAAGCATTAG MTASQKGCVTTEHLEMEINSFGENKSWKSVLDAMADTHGDASGLFDCNICLETVKDPVVTLCGHLFCWPCLYKWLHFQDSSKEKHGRRLQQCPVCKAEVSDATLVPLYGKGGTQDPFESKNSQLGIVVPRRPNGPACFELPTPTSHPTSHPVPQSRQGNSSNQSNICYAQVTGVFGEVVYARMFGAITNLYAYPNAYPLVWSSSPRIRRHILQTDESLNRICIFLFCFLVWLSVGGDVAPWLALMTQNKWNFTNHEKSWSCVSTIASVNDFIVLRLAMSLKEFYQSLQVGLSSQDFVHFSINRKTIHLHLINLMMLPDLSVELSQLISLAHNYREERHKH Homology
BLAST of Cp4.1LG15g08030.1 vs. ExPASy Swiss-Prot
Match: Q6R567 (E3 ubiquitin-protein ligase RMA1H1 OS=Capsicum annuum OX=4072 GN=RMA1H1 PE=1 SV=1) HSP 1 Score: 204.5 bits (519), Expect = 1.9e-51 Identity = 107/226 (47.35%), Postives = 139/226 (61.50%), Query Frame = 0
BLAST of Cp4.1LG15g08030.1 vs. ExPASy Swiss-Prot
Match: O64425 (E3 ubiquitin-protein ligase RMA1 OS=Arabidopsis thaliana OX=3702 GN=RMA1 PE=1 SV=1) HSP 1 Score: 161.8 bits (408), Expect = 1.4e-38 Identity = 90/205 (43.90%), Postives = 119/205 (58.05%), Query Frame = 0
BLAST of Cp4.1LG15g08030.1 vs. ExPASy Swiss-Prot
Match: P93030 (E3 ubiquitin-protein ligase RMA2 OS=Arabidopsis thaliana OX=3702 GN=RMA2 PE=1 SV=1) HSP 1 Score: 144.1 bits (362), Expect = 3.0e-33 Identity = 79/196 (40.31%), Postives = 112/196 (57.14%), Query Frame = 0
BLAST of Cp4.1LG15g08030.1 vs. ExPASy Swiss-Prot
Match: Q8GUK7 (E3 ubiquitin-protein ligase RMA3 OS=Arabidopsis thaliana OX=3702 GN=RMA3 PE=1 SV=1) HSP 1 Score: 141.0 bits (354), Expect = 2.5e-32 Identity = 87/222 (39.19%), Postives = 115/222 (51.80%), Query Frame = 0
BLAST of Cp4.1LG15g08030.1 vs. ExPASy Swiss-Prot
Match: Q96GF1 (E3 ubiquitin-protein ligase RNF185 OS=Homo sapiens OX=9606 GN=RNF185 PE=1 SV=1) HSP 1 Score: 97.8 bits (242), Expect = 2.5e-19 Identity = 47/102 (46.08%), Postives = 59/102 (57.84%), Query Frame = 0
BLAST of Cp4.1LG15g08030.1 vs. NCBI nr
Match: XP_023554609.1 (E3 ubiquitin-protein ligase RMA1H1-like [Cucurbita pepo subsp. pepo] >XP_023554610.1 E3 ubiquitin-protein ligase RMA1H1-like [Cucurbita pepo subsp. pepo] >XP_023554611.1 E3 ubiquitin-protein ligase RMA1H1-like [Cucurbita pepo subsp. pepo] >XP_023554612.1 E3 ubiquitin-protein ligase RMA1H1-like [Cucurbita pepo subsp. pepo] >KAG7011971.1 E3 ubiquitin-protein ligase RMA1H1, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 461 bits (1187), Expect = 4.16e-162 Identity = 215/215 (100.00%), Postives = 215/215 (100.00%), Query Frame = 0
BLAST of Cp4.1LG15g08030.1 vs. NCBI nr
Match: XP_022969255.1 (E3 ubiquitin-protein ligase RMA1H1-like [Cucurbita maxima] >XP_022969256.1 E3 ubiquitin-protein ligase RMA1H1-like [Cucurbita maxima] >XP_022969257.1 E3 ubiquitin-protein ligase RMA1H1-like [Cucurbita maxima] >XP_022969258.1 E3 ubiquitin-protein ligase RMA1H1-like [Cucurbita maxima]) HSP 1 Score: 452 bits (1163), Expect = 1.88e-158 Identity = 210/215 (97.67%), Postives = 211/215 (98.14%), Query Frame = 0
BLAST of Cp4.1LG15g08030.1 vs. NCBI nr
Match: XP_022952773.1 (E3 ubiquitin-protein ligase RMA1H1-like [Cucurbita moschata] >XP_022952774.1 E3 ubiquitin-protein ligase RMA1H1-like [Cucurbita moschata] >XP_022952775.1 E3 ubiquitin-protein ligase RMA1H1-like [Cucurbita moschata] >XP_022952776.1 E3 ubiquitin-protein ligase RMA1H1-like [Cucurbita moschata]) HSP 1 Score: 451 bits (1159), Expect = 7.65e-158 Identity = 209/215 (97.21%), Postives = 211/215 (98.14%), Query Frame = 0
BLAST of Cp4.1LG15g08030.1 vs. NCBI nr
Match: KAG6572360.1 (E3 ubiquitin-protein ligase RMA1H1, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 415 bits (1067), Expect = 3.63e-144 Identity = 199/230 (86.52%), Postives = 199/230 (86.52%), Query Frame = 0
BLAST of Cp4.1LG15g08030.1 vs. NCBI nr
Match: XP_038888270.1 (E3 ubiquitin-protein ligase RMA1H1 [Benincasa hispida]) HSP 1 Score: 393 bits (1010), Expect = 6.68e-135 Identity = 187/225 (83.11%), Postives = 201/225 (89.33%), Query Frame = 0
BLAST of Cp4.1LG15g08030.1 vs. ExPASy TrEMBL
Match: A0A6J1HXA9 (E3 ubiquitin-protein ligase RMA1H1-like OS=Cucurbita maxima OX=3661 GN=LOC111468313 PE=4 SV=1) HSP 1 Score: 452 bits (1163), Expect = 9.11e-159 Identity = 210/215 (97.67%), Postives = 211/215 (98.14%), Query Frame = 0
BLAST of Cp4.1LG15g08030.1 vs. ExPASy TrEMBL
Match: A0A6J1GLI9 (E3 ubiquitin-protein ligase RMA1H1-like OS=Cucurbita moschata OX=3662 GN=LOC111455370 PE=4 SV=1) HSP 1 Score: 451 bits (1159), Expect = 3.70e-158 Identity = 209/215 (97.21%), Postives = 211/215 (98.14%), Query Frame = 0
BLAST of Cp4.1LG15g08030.1 vs. ExPASy TrEMBL
Match: A0A1S3C1W7 (E3 ubiquitin-protein ligase RMA1H1 OS=Cucumis melo OX=3656 GN=LOC103495518 PE=4 SV=1) HSP 1 Score: 387 bits (995), Expect = 6.40e-133 Identity = 187/226 (82.74%), Postives = 199/226 (88.05%), Query Frame = 0
BLAST of Cp4.1LG15g08030.1 vs. ExPASy TrEMBL
Match: A0A5A7SLT9 (E3 ubiquitin-protein ligase RMA1H1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13G003470 PE=4 SV=1) HSP 1 Score: 387 bits (995), Expect = 6.40e-133 Identity = 187/226 (82.74%), Postives = 199/226 (88.05%), Query Frame = 0
BLAST of Cp4.1LG15g08030.1 vs. ExPASy TrEMBL
Match: A0A6J1ERI0 (E3 ubiquitin-protein ligase RMA1H1-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111437136 PE=4 SV=1) HSP 1 Score: 379 bits (972), Expect = 1.68e-129 Identity = 183/219 (83.56%), Postives = 193/219 (88.13%), Query Frame = 0
BLAST of Cp4.1LG15g08030.1 vs. TAIR 10
Match: AT4G03510.1 (RING membrane-anchor 1 ) HSP 1 Score: 161.8 bits (408), Expect = 9.9e-40 Identity = 90/205 (43.90%), Postives = 119/205 (58.05%), Query Frame = 0
BLAST of Cp4.1LG15g08030.1 vs. TAIR 10
Match: AT4G03510.2 (RING membrane-anchor 1 ) HSP 1 Score: 161.8 bits (408), Expect = 9.9e-40 Identity = 90/205 (43.90%), Postives = 119/205 (58.05%), Query Frame = 0
BLAST of Cp4.1LG15g08030.1 vs. TAIR 10
Match: AT4G28270.1 (RING membrane-anchor 2 ) HSP 1 Score: 144.1 bits (362), Expect = 2.1e-34 Identity = 79/196 (40.31%), Postives = 112/196 (57.14%), Query Frame = 0
BLAST of Cp4.1LG15g08030.1 vs. TAIR 10
Match: AT4G27470.1 (RING membrane-anchor 3 ) HSP 1 Score: 141.0 bits (354), Expect = 1.8e-33 Identity = 87/222 (39.19%), Postives = 115/222 (51.80%), Query Frame = 0
BLAST of Cp4.1LG15g08030.1 vs. TAIR 10
Match: AT2G23780.1 (RING/U-box superfamily protein ) HSP 1 Score: 120.6 bits (301), Expect = 2.5e-27 Identity = 58/113 (51.33%), Postives = 70/113 (61.95%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
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