Cp4.1LG15g07290.1 (mRNA) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG15g07290.1
Type	mRNA
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X2
Location	Cp4.1LG15: 7580725 .. 7581602 (-)
Sequence length	579
RNA-Seq Expression	Cp4.1LG15g07290.1
Synteny	Cp4.1LG15g07290.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AGAAGGGTAAAAAAAAGAAAAGTATAAAAGGAAAAAAAAGAAAAAACCCCCTCGTTTTCTCGATCAACGGAAGTAGGGTTTAGCATTTGAATGCCCTAAATCTGAGACGGAACTCTGTTTATCGTGGCTGACTGCACATAATTTTTCGCCGCGCTCTCAGATTTTACGATGGCTTCCTTTGCCGCCAGGGCCATTTCCCGATCCTCCTTCGGCAAGGCTGCGACTCTTCTGAGCGTCGGAGCCAGAGCAGCTCCGGCTCGTTCACCATTTCGCATTGCTTCTAAACGACCTATCTCTCAGTGTGCTGTAAGGTAAATTCCTCACAAGCATTCGATTTCGACGAAACGTTCTCGATGTAAATTAATTATGAAAACTCTGTGAGTTGAGTTGTTCCATATGTGATGTTTTTCTTTTTCTCTTTTTCTATGAAGGCTTCCAGTTGAAATGAGTTTCTGTGTGGAGTCCATGCTTCCCTTCCATTCTGCTACTTCTTCGGCATTAATGACTTCGATGCTTTCTGTCTCTCGCCATAGTTATGGTTGGCTTTCAGAAGGTACTTTCTGTCTCTTCTAATTCTTCTAGTAGTTTATATGGATGCGACTAAGTTATGAGCCAAGAGTTGTTGCCTCCGTGTTCTGCATCTATACTAGAGTGAATTTTACTTTTTCCAATGTTCTCGTTATACTGCCACTATTAAGGTTTCTGATTTCTGTTGGCCTAAAAACTGAATAGCTGTGTTGGTCGAATACGACCTCAGCTTCATTGGTTACTTGGATTGCCTTTGTGATGTACAACCGATGGGGGATAACATGTGTACACAATTGATCCTATATATTTGGCCCTTAGAATGCAGGATGAAAAGGAGGAGGATGGAATAG

mRNA sequence

AGAAGGGTAAAAAAAAGAAAAGTATAAAAGGAAAAAAAAGAAAAAACCCCCTCGTTTTCTCGATCAACGGAAGTAGGGTTTAGCATTTGAATGCCCTAAATCTGAGACGGAACTCTGTTTATCGTGGCTGACTGCACATAATTTTTCGCCGCGCTCTCAGATTTTACGATGGCTTCCTTTGCCGCCAGGGCCATTTCCCGATCCTCCTTCGGCAAGGCTGCGACTCTTCTGAGCGTCGGAGCCAGAGCAGCTCCGGCTCGTTCACCATTTCGCATTGCTTCTAAACGACCTATCTCTCAGTGTGCTGTAAGGCTTCCAGTTGAAATGAGTTTCTGTGTGGAGTCCATGCTTCCCTTCCATTCTGCTACTTCTTCGGCATTAATGACTTCGATGCTTTCTGTCTCTCGCCATAGTTATGGTTGGCTTTCAGAAGCTGTGTTGGTCGAATACGACCTCAGCTTCATTGGTTACTTGGATTGCCTTTGTGATGTACAACCGATGGGGGATAACATGTGTACACAATTGATCCTATATATTTGGCCCTTAGAATGCAGGATGAAAAGGAGGAGGATGGAATAG

Coding sequence (CDS)

ATGGCTTCCTTTGCCGCCAGGGCCATTTCCCGATCCTCCTTCGGCAAGGCTGCGACTCTTCTGAGCGTCGGAGCCAGAGCAGCTCCGGCTCGTTCACCATTTCGCATTGCTTCTAAACGACCTATCTCTCAGTGTGCTGTAAGGCTTCCAGTTGAAATGAGTTTCTGTGTGGAGTCCATGCTTCCCTTCCATTCTGCTACTTCTTCGGCATTAATGACTTCGATGCTTTCTGTCTCTCGCCATAGTTATGGTTGGCTTTCAGAAGCTGTGTTGGTCGAATACGACCTCAGCTTCATTGGTTACTTGGATTGCCTTTGTGATGTACAACCGATGGGGGATAACATGTGTACACAATTGATCCTATATATTTGGCCCTTAGAATGCAGGATGAAAAGGAGGAGGATGGAATAG

Protein sequence

MASFAARAISRSSFGKAATLLSVGARAAPARSPFRIASKRPISQCAVRLPVEMSFCVESMLPFHSATSSALMTSMLSVSRHSYGWLSEAVLVEYDLSFIGYLDCLCDVQPMGDNMCTQLILYIWPLECRMKRRRME

Homology

[Close]

BLAST of Cp4.1LG15g07290.1 vs. ExPASy Swiss-Prot
Match: Q93ZJ3 (Protein NUCLEAR FUSION DEFECTIVE 6, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=NFD6 PE=3 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 2.9e-11
Identity = 43/87 (49.43%), Postives = 61/87 (70.11%), Query Frame = 0


Query: 6  ARAISRSSFGKAATLLSVGARAAPARSP---FRIASKRPISQCAVRLPVEMSFCVESMLP 65
          AR++ R++  ++A   S G  A+ A+S    FR  ++R      +R PVE+SFCVES+LP
Sbjct: 10 ARSMLRAASSRSAA-ASTGRFASQAKSAPPLFRATARRSPLLSPLRNPVELSFCVESLLP 69

Query: 66 FHSATSSALMTSMLSVSRHSYGWLSEA 90
          +HSAT+SALMTS LS+S  +YGWLS+A
Sbjct: 70 YHSATASALMTSKLSISGQTYGWLSDA 95

[Close]

BLAST of Cp4.1LG15g07290.1 vs. NCBI nr
Match: XP_023554651.1 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 164 bits (415), Expect = 7.72e-50
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 0


Query: 1  MASFAARAISRSSFGKAATLLSVGARAAPARSPFRIASKRPISQCAVRLPVEMSFCVESM 60
          MASFAARAISRSSFGKAATLLSVGARAAPARSPFRIASKRPISQCAVRLPVEMSFCVESM
Sbjct: 1  MASFAARAISRSSFGKAATLLSVGARAAPARSPFRIASKRPISQCAVRLPVEMSFCVESM 60

Query: 61 LPFHSATSSALMTSMLSVSRHSYGWLSE 88
          LPFHSATSSALMTSMLSVSRHSYGWLSE
Sbjct: 61 LPFHSATSSALMTSMLSVSRHSYGWLSE 88

[Close]

BLAST of Cp4.1LG15g07290.1 vs. NCBI nr
Match: XP_023554650.1 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 164 bits (415), Expect = 7.97e-50
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 0


Query: 1  MASFAARAISRSSFGKAATLLSVGARAAPARSPFRIASKRPISQCAVRLPVEMSFCVESM 60
          MASFAARAISRSSFGKAATLLSVGARAAPARSPFRIASKRPISQCAVRLPVEMSFCVESM
Sbjct: 1  MASFAARAISRSSFGKAATLLSVGARAAPARSPFRIASKRPISQCAVRLPVEMSFCVESM 60

Query: 61 LPFHSATSSALMTSMLSVSRHSYGWLSE 88
          LPFHSATSSALMTSMLSVSRHSYGWLSE
Sbjct: 61 LPFHSATSSALMTSMLSVSRHSYGWLSE 88

[Close]

BLAST of Cp4.1LG15g07290.1 vs. NCBI nr
Match: XP_022969310.1 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 157 bits (397), Expect = 4.26e-47
Identity = 84/88 (95.45%), Postives = 86/88 (97.73%), Query Frame = 0


Query: 1  MASFAARAISRSSFGKAATLLSVGARAAPARSPFRIASKRPISQCAVRLPVEMSFCVESM 60
          MASFAARAISRSSFG+AATLLSVG+RAAPARS FRIASKRP SQCAVRLPVEMSFCVESM
Sbjct: 1  MASFAARAISRSSFGRAATLLSVGSRAAPARSSFRIASKRPFSQCAVRLPVEMSFCVESM 60

Query: 61 LPFHSATSSALMTSMLSVSRHSYGWLSE 88
          LPFHSATSSALMTSMLSVSRHSYGWLSE
Sbjct: 61 LPFHSATSSALMTSMLSVSRHSYGWLSE 88

[Close]

BLAST of Cp4.1LG15g07290.1 vs. NCBI nr
Match: XP_022969309.1 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 157 bits (397), Expect = 4.40e-47
Identity = 84/88 (95.45%), Postives = 86/88 (97.73%), Query Frame = 0


Query: 1  MASFAARAISRSSFGKAATLLSVGARAAPARSPFRIASKRPISQCAVRLPVEMSFCVESM 60
          MASFAARAISRSSFG+AATLLSVG+RAAPARS FRIASKRP SQCAVRLPVEMSFCVESM
Sbjct: 1  MASFAARAISRSSFGRAATLLSVGSRAAPARSSFRIASKRPFSQCAVRLPVEMSFCVESM 60

Query: 61 LPFHSATSSALMTSMLSVSRHSYGWLSE 88
          LPFHSATSSALMTSMLSVSRHSYGWLSE
Sbjct: 61 LPFHSATSSALMTSMLSVSRHSYGWLSE 88

[Close]

BLAST of Cp4.1LG15g07290.1 vs. NCBI nr
Match: XP_022952575.1 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 154 bits (389), Expect = 7.05e-46
Identity = 83/88 (94.32%), Postives = 85/88 (96.59%), Query Frame = 0


Query: 1  MASFAARAISRSSFGKAATLLSVGARAAPARSPFRIASKRPISQCAVRLPVEMSFCVESM 60
          MASFAARAISRSSFGKAATLLSVG+RAAPARS FRIA+KRP SQCAVRLPVEMS CVESM
Sbjct: 1  MASFAARAISRSSFGKAATLLSVGSRAAPARSSFRIAAKRPFSQCAVRLPVEMSCCVESM 60

Query: 61 LPFHSATSSALMTSMLSVSRHSYGWLSE 88
          LPFHSATSSALMTSMLSVSRHSYGWLSE
Sbjct: 61 LPFHSATSSALMTSMLSVSRHSYGWLSE 88

[Close]

BLAST of Cp4.1LG15g07290.1 vs. ExPASy TrEMBL
Match: A0A6J1HZK6 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111468354 PE=4 SV=1)

HSP 1 Score: 157 bits (397), Expect = 2.06e-47
Identity = 84/88 (95.45%), Postives = 86/88 (97.73%), Query Frame = 0


Query: 1  MASFAARAISRSSFGKAATLLSVGARAAPARSPFRIASKRPISQCAVRLPVEMSFCVESM 60
          MASFAARAISRSSFG+AATLLSVG+RAAPARS FRIASKRP SQCAVRLPVEMSFCVESM
Sbjct: 1  MASFAARAISRSSFGRAATLLSVGSRAAPARSSFRIASKRPFSQCAVRLPVEMSFCVESM 60

Query: 61 LPFHSATSSALMTSMLSVSRHSYGWLSE 88
          LPFHSATSSALMTSMLSVSRHSYGWLSE
Sbjct: 61 LPFHSATSSALMTSMLSVSRHSYGWLSE 88

[Close]

BLAST of Cp4.1LG15g07290.1 vs. ExPASy TrEMBL
Match: A0A6J1I278 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111468354 PE=4 SV=1)

HSP 1 Score: 157 bits (397), Expect = 2.13e-47
Identity = 84/88 (95.45%), Postives = 86/88 (97.73%), Query Frame = 0


Query: 1  MASFAARAISRSSFGKAATLLSVGARAAPARSPFRIASKRPISQCAVRLPVEMSFCVESM 60
          MASFAARAISRSSFG+AATLLSVG+RAAPARS FRIASKRP SQCAVRLPVEMSFCVESM
Sbjct: 1  MASFAARAISRSSFGRAATLLSVGSRAAPARSSFRIASKRPFSQCAVRLPVEMSFCVESM 60

Query: 61 LPFHSATSSALMTSMLSVSRHSYGWLSE 88
          LPFHSATSSALMTSMLSVSRHSYGWLSE
Sbjct: 61 LPFHSATSSALMTSMLSVSRHSYGWLSE 88

[Close]

BLAST of Cp4.1LG15g07290.1 vs. ExPASy TrEMBL
Match: A0A6J1GM60 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111455225 PE=4 SV=1)

HSP 1 Score: 154 bits (389), Expect = 3.41e-46
Identity = 83/88 (94.32%), Postives = 85/88 (96.59%), Query Frame = 0


Query: 1  MASFAARAISRSSFGKAATLLSVGARAAPARSPFRIASKRPISQCAVRLPVEMSFCVESM 60
          MASFAARAISRSSFGKAATLLSVG+RAAPARS FRIA+KRP SQCAVRLPVEMS CVESM
Sbjct: 1  MASFAARAISRSSFGKAATLLSVGSRAAPARSSFRIAAKRPFSQCAVRLPVEMSCCVESM 60

Query: 61 LPFHSATSSALMTSMLSVSRHSYGWLSE 88
          LPFHSATSSALMTSMLSVSRHSYGWLSE
Sbjct: 61 LPFHSATSSALMTSMLSVSRHSYGWLSE 88

[Close]

BLAST of Cp4.1LG15g07290.1 vs. ExPASy TrEMBL
Match: A0A6J1GM36 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111455225 PE=4 SV=1)

HSP 1 Score: 154 bits (389), Expect = 3.52e-46
Identity = 83/88 (94.32%), Postives = 85/88 (96.59%), Query Frame = 0


Query: 1  MASFAARAISRSSFGKAATLLSVGARAAPARSPFRIASKRPISQCAVRLPVEMSFCVESM 60
          MASFAARAISRSSFGKAATLLSVG+RAAPARS FRIA+KRP SQCAVRLPVEMS CVESM
Sbjct: 1  MASFAARAISRSSFGKAATLLSVGSRAAPARSSFRIAAKRPFSQCAVRLPVEMSCCVESM 60

Query: 61 LPFHSATSSALMTSMLSVSRHSYGWLSE 88
          LPFHSATSSALMTSMLSVSRHSYGWLSE
Sbjct: 61 LPFHSATSSALMTSMLSVSRHSYGWLSE 88

[Close]

BLAST of Cp4.1LG15g07290.1 vs. ExPASy TrEMBL
Match: A0A5D3CTR8 (Protein NUCLEAR FUSION DEFECTIVE 6 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold892G00250 PE=4 SV=1)

HSP 1 Score: 146 bits (368), Expect = 7.51e-43
Identity = 79/98 (80.61%), Postives = 84/98 (85.71%), Query Frame = 0


Query: 1  MASFAARAISRSSFGKAATLLSVGARAAPARSPFRIASKRPISQCAVRLPVEMSFCVESM 60
          MASFAARAI RSS GKAATLLS GARAAPARSPFRIASKRP S  + R+P+EMSFCVESM
Sbjct: 1  MASFAARAIFRSSSGKAATLLSAGARAAPARSPFRIASKRPFSHSSFRIPIEMSFCVESM 60

Query: 61 LPFHSATSSALMTSMLSVSRHSYGWLSEAVLVEYDLSF 98
          LPFHSATSSALMTSMLSVS HSYGWLSE +L  +   F
Sbjct: 61 LPFHSATSSALMTSMLSVSPHSYGWLSEGILSAFFFFF 98

[Close]

BLAST of Cp4.1LG15g07290.1 vs. TAIR 10
Match: AT2G20585.1 (nuclear fusion defective 6 )

HSP 1 Score: 69.7 bits (169), Expect = 2.0e-12
Identity = 43/87 (49.43%), Postives = 61/87 (70.11%), Query Frame = 0


Query: 6  ARAISRSSFGKAATLLSVGARAAPARSP---FRIASKRPISQCAVRLPVEMSFCVESMLP 65
          AR++ R++  ++A   S G  A+ A+S    FR  ++R      +R PVE+SFCVES+LP
Sbjct: 10 ARSMLRAASSRSAA-ASTGRFASQAKSAPPLFRATARRSPLLSPLRNPVELSFCVESLLP 69

Query: 66 FHSATSSALMTSMLSVSRHSYGWLSEA 90
          +HSAT+SALMTS LS+S  +YGWLS+A
Sbjct: 70 YHSATASALMTSKLSISGQTYGWLSDA 95

[Close]

BLAST of Cp4.1LG15g07290.1 vs. TAIR 10
Match: AT2G20585.2 (nuclear fusion defective 6 )

HSP 1 Score: 69.7 bits (169), Expect = 2.0e-12
Identity = 43/87 (49.43%), Postives = 61/87 (70.11%), Query Frame = 0


Query: 6  ARAISRSSFGKAATLLSVGARAAPARSP---FRIASKRPISQCAVRLPVEMSFCVESMLP 65
          AR++ R++  ++A   S G  A+ A+S    FR  ++R      +R PVE+SFCVES+LP
Sbjct: 10 ARSMLRAASSRSAA-ASTGRFASQAKSAPPLFRATARRSPLLSPLRNPVELSFCVESLLP 69

Query: 66 FHSATSSALMTSMLSVSRHSYGWLSEA 90
          +HSAT+SALMTS LS+S  +YGWLS+A
Sbjct: 70 YHSATASALMTSKLSISGQTYGWLSDA 95

[Close]

BLAST of Cp4.1LG15g07290.1 vs. TAIR 10
Match: AT2G20585.3 (nuclear fusion defective 6 )

HSP 1 Score: 68.2 bits (165), Expect = 5.9e-12
Identity = 42/86 (48.84%), Postives = 60/86 (69.77%), Query Frame = 0


Query: 6  ARAISRSSFGKAATLLSVGARAAPARSP---FRIASKRPISQCAVRLPVEMSFCVESMLP 65
          AR++ R++  ++A   S G  A+ A+S    FR  ++R      +R PVE+SFCVES+LP
Sbjct: 10 ARSMLRAASSRSAA-ASTGRFASQAKSAPPLFRATARRSPLLSPLRNPVELSFCVESLLP 69

Query: 66 FHSATSSALMTSMLSVSRHSYGWLSE 89
          +HSAT+SALMTS LS+S  +YGWLS+
Sbjct: 70 YHSATASALMTSKLSISGQTYGWLSD 94

[Close]

BLAST of Cp4.1LG15g07290.1 vs. TAIR 10
Match: AT2G33847.1 (unknown protein; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G28395.4); Has 74 Blast hits to 74 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 74; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 64.7 bits (156), Expect = 6.6e-11
Identity = 40/80 (50.00%), Postives = 54/80 (67.50%), Query Frame = 0


Query: 5  AARAISRSSFGKA--ATLLSVGARAAPARSPFRIASKRPISQCAVRLPVEMSFCVESMLP 64
          AAR++ RS  G+A  A L S     + ARS F++  + P+S    R PVE+S CVE+MLP
Sbjct: 3  AARSVFRSGVGRAAVAALRSTKPMPSSARSSFKLPKQSPLSHRIFRSPVELSCCVETMLP 62

Query: 65 FHSATSSALMTSMLSVSRHS 83
          +H+AT+SAL+ SMLSVS  S
Sbjct: 63 YHTATASALLNSMLSVSGRS 82

[Close]

BLAST of Cp4.1LG15g07290.1 vs. TAIR 10
Match: AT2G33847.2 (unknown protein; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G28395.3); Has 71 Blast hits to 71 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 71; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 64.7 bits (156), Expect = 6.6e-11
Identity = 40/80 (50.00%), Postives = 54/80 (67.50%), Query Frame = 0


Query: 5  AARAISRSSFGKA--ATLLSVGARAAPARSPFRIASKRPISQCAVRLPVEMSFCVESMLP 64
          AAR++ RS  G+A  A L S     + ARS F++  + P+S    R PVE+S CVE+MLP
Sbjct: 3  AARSVFRSGVGRAAVAALRSTKPMPSSARSSFKLPKQSPLSHRIFRSPVELSCCVETMLP 62

Query: 65 FHSATSSALMTSMLSVSRHS 83
          +H+AT+SAL+ SMLSVS  S
Sbjct: 63 YHTATASALLNSMLSVSGRS 82

The following BLAST results are available for this feature:

BLAST of Cp4.1LG15g07290.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q93ZJ3	2.9e-11	49.43	Protein NUCLEAR FUSION DEFECTIVE 6, mitochondrial OS=Arabidopsis thaliana OX=370...	[more]

BLAST of Cp4.1LG15g07290.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023554651.1	7.72e-50	100.00	protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X2 ...	[more]
XP_023554650.1	7.97e-50	100.00	protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1 ...	[more]
XP_022969310.1	4.26e-47	95.45	protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X2 ...	[more]
XP_022969309.1	4.40e-47	95.45	protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1 ...	[more]
XP_022952575.1	7.05e-46	94.32	protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X2 ...	[more]

BLAST of Cp4.1LG15g07290.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HZK6	2.06e-47	95.45	protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X2 ...	[more]
A0A6J1I278	2.13e-47	95.45	protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1 ...	[more]
A0A6J1GM60	3.41e-46	94.32	protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X2 ...	[more]
A0A6J1GM36	3.52e-46	94.32	protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1 ...	[more]
A0A5D3CTR8	7.51e-43	80.61	Protein NUCLEAR FUSION DEFECTIVE 6 OS=Cucumis melo var. makuwa OX=1194695 GN=E56...	[more]

BLAST of Cp4.1LG15g07290.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G20585.1	2.0e-12	49.43	nuclear fusion defective 6	[more]
AT2G20585.2	2.0e-12	49.43	nuclear fusion defective 6	[more]
AT2G20585.3	5.9e-12	48.84	nuclear fusion defective 6	[more]
AT2G33847.1	6.6e-11	50.00	unknown protein; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein matc...	[more]
AT2G33847.2	6.6e-11	50.00	unknown protein; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein matc...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR033251	Protein NUCLEAR FUSION DEFECTIVE 6, mitochondrial	PANTHER	PTHR33156:SF48	PROTEIN NUCLEAR FUSION DEFECTIVE 6, CHLOROPLASTIC/MITOCHONDRIAL	coord: 3..88
IPR043459	NFD6/NOXY2-like	PANTHER	PTHR33156	OS02G0230000 PROTEIN	coord: 3..88

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cp4.1LG15g07290	Cp4.1LG15g07290	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG15g07290.1:exon:003	Cp4.1LG15g07290.1:exon:003	exon
Cp4.1LG15g07290.1:exon:002	Cp4.1LG15g07290.1:exon:002	exon
Cp4.1LG15g07290.1:exon:001	Cp4.1LG15g07290.1:exon:001	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG15g07290.1:cds:001	Cp4.1LG15g07290.1:cds:001	CDS
Cp4.1LG15g07290.1:cds:002	Cp4.1LG15g07290.1:cds:002	CDS
Cp4.1LG15g07290.1:cds:003	Cp4.1LG15g07290.1:cds:003	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG15g07290.1:five_prime_utr:001	Cp4.1LG15g07290.1:five_prime_utr:001	five_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG15g07290.1	Cp4.1LG15g07290.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000741	karyogamy
cellular_component	GO:0016021	integral component of membrane