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Cp4.1LG15g07290 (gene) Cucurbita pepo (MU‐CU‐16) v4.1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.AGAAGGGTAAAAAAAAGAAAAGTATAAAAGGAAAAAAAAGAAAAAACCCCCTCGTTTTCTCGATCAACGGAAGTAGGGTTTAGCATTTGAATGCCCTAAATCTGAGACGGAACTCTGTTTATCGTGGCTGACTGCACATAATTTTTCGCCGCGCTCTCAGATTTTACGATGGCTTCCTTTGCCGCCAGGGCCATTTCCCGATCCTCCTTCGGCAAGGCTGCGACTCTTCTGAGCGTCGGAGCCAGAGCAGCTCCGGCTCGTTCACCATTTCGCATTGCTTCTAAACGACCTATCTCTCAGTGTGCTGTAAGGTAAATTCCTCACAAGCATTCGATTTCGACGAAACGTTCTCGATGTAAATTAATTATGAAAACTCTGTGAGTTGAGTTGTTCCATATGTGATGTTTTTCTTTTTCTCTTTTTCTATGAAGGCTTCCAGTTGAAATGAGTTTCTGTGTGGAGTCCATGCTTCCCTTCCATTCTGCTACTTCTTCGGCATTAATGACTTCGATGCTTTCTGTCTCTCGCCATAGTTATGGTTGGCTTTCAGAAGGTACTTTCTGTCTCTTCTAATTCTTCTAGTAGTTTATATGGATGCGACTAAGTTATGAGCCAAGAGTTGTTGCCTCCGTGTTCTGCATCTATACTAGAGTGAATTTTACTTTTTCCAATGTTCTCGTTATACTGCCACTATTAAGGTTTCTGATTTCTGTTGGCCTAAAAACTGAATAGCTGTGTTGGTCGAATACGACCTCAGCTTCATTGGTTACTTGGATTGCCTTTGTGATGTACAACCGATGGGGGATAACATGTGTACACAATTGATCCTATATATTTGGCCCTTAGAATGCAGGATGAAAAGGAGGAGGATGGAATAG AGAAGGGTAAAAAAAAGAAAAGTATAAAAGGAAAAAAAAGAAAAAACCCCCTCGTTTTCTCGATCAACGGAAGTAGGGTTTAGCATTTGAATGCCCTAAATCTGAGACGGAACTCTGTTTATCGTGGCTGACTGCACATAATTTTTCGCCGCGCTCTCAGATTTTACGATGGCTTCCTTTGCCGCCAGGGCCATTTCCCGATCCTCCTTCGGCAAGGCTGCGACTCTTCTGAGCGTCGGAGCCAGAGCAGCTCCGGCTCGTTCACCATTTCGCATTGCTTCTAAACGACCTATCTCTCAGTGTGCTGTAAGGCTTCCAGTTGAAATGAGTTTCTGTGTGGAGTCCATGCTTCCCTTCCATTCTGCTACTTCTTCGGCATTAATGACTTCGATGCTTTCTGTCTCTCGCCATAGTTATGGTTGGCTTTCAGAAGCTGTGTTGGTCGAATACGACCTCAGCTTCATTGGTTACTTGGATTGCCTTTGTGATGTACAACCGATGGGGGATAACATGTGTACACAATTGATCCTATATATTTGGCCCTTAGAATGCAGGATGAAAAGGAGGAGGATGGAATAG ATGGCTTCCTTTGCCGCCAGGGCCATTTCCCGATCCTCCTTCGGCAAGGCTGCGACTCTTCTGAGCGTCGGAGCCAGAGCAGCTCCGGCTCGTTCACCATTTCGCATTGCTTCTAAACGACCTATCTCTCAGTGTGCTGTAAGGCTTCCAGTTGAAATGAGTTTCTGTGTGGAGTCCATGCTTCCCTTCCATTCTGCTACTTCTTCGGCATTAATGACTTCGATGCTTTCTGTCTCTCGCCATAGTTATGGTTGGCTTTCAGAAGCTGTGTTGGTCGAATACGACCTCAGCTTCATTGGTTACTTGGATTGCCTTTGTGATGTACAACCGATGGGGGATAACATGTGTACACAATTGATCCTATATATTTGGCCCTTAGAATGCAGGATGAAAAGGAGGAGGATGGAATAG MASFAARAISRSSFGKAATLLSVGARAAPARSPFRIASKRPISQCAVRLPVEMSFCVESMLPFHSATSSALMTSMLSVSRHSYGWLSEAVLVEYDLSFIGYLDCLCDVQPMGDNMCTQLILYIWPLECRMKRRRME Homology
BLAST of Cp4.1LG15g07290 vs. ExPASy Swiss-Prot
Match: Q93ZJ3 (Protein NUCLEAR FUSION DEFECTIVE 6, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=NFD6 PE=3 SV=1) HSP 1 Score: 69.7 bits (169), Expect = 2.9e-11 Identity = 43/87 (49.43%), Postives = 61/87 (70.11%), Query Frame = 0
BLAST of Cp4.1LG15g07290 vs. NCBI nr
Match: XP_023554651.1 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X2 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 164 bits (415), Expect = 7.72e-50 Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 0
BLAST of Cp4.1LG15g07290 vs. NCBI nr
Match: XP_023554650.1 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 164 bits (415), Expect = 7.97e-50 Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 0
BLAST of Cp4.1LG15g07290 vs. NCBI nr
Match: XP_022969310.1 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X2 [Cucurbita maxima]) HSP 1 Score: 157 bits (397), Expect = 4.26e-47 Identity = 84/88 (95.45%), Postives = 86/88 (97.73%), Query Frame = 0
BLAST of Cp4.1LG15g07290 vs. NCBI nr
Match: XP_022969309.1 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1 [Cucurbita maxima]) HSP 1 Score: 157 bits (397), Expect = 4.40e-47 Identity = 84/88 (95.45%), Postives = 86/88 (97.73%), Query Frame = 0
BLAST of Cp4.1LG15g07290 vs. NCBI nr
Match: XP_022952575.1 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X2 [Cucurbita moschata]) HSP 1 Score: 154 bits (389), Expect = 7.05e-46 Identity = 83/88 (94.32%), Postives = 85/88 (96.59%), Query Frame = 0
BLAST of Cp4.1LG15g07290 vs. ExPASy TrEMBL
Match: A0A6J1HZK6 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111468354 PE=4 SV=1) HSP 1 Score: 157 bits (397), Expect = 2.06e-47 Identity = 84/88 (95.45%), Postives = 86/88 (97.73%), Query Frame = 0
BLAST of Cp4.1LG15g07290 vs. ExPASy TrEMBL
Match: A0A6J1I278 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111468354 PE=4 SV=1) HSP 1 Score: 157 bits (397), Expect = 2.13e-47 Identity = 84/88 (95.45%), Postives = 86/88 (97.73%), Query Frame = 0
BLAST of Cp4.1LG15g07290 vs. ExPASy TrEMBL
Match: A0A6J1GM60 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111455225 PE=4 SV=1) HSP 1 Score: 154 bits (389), Expect = 3.41e-46 Identity = 83/88 (94.32%), Postives = 85/88 (96.59%), Query Frame = 0
BLAST of Cp4.1LG15g07290 vs. ExPASy TrEMBL
Match: A0A6J1GM36 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111455225 PE=4 SV=1) HSP 1 Score: 154 bits (389), Expect = 3.52e-46 Identity = 83/88 (94.32%), Postives = 85/88 (96.59%), Query Frame = 0
BLAST of Cp4.1LG15g07290 vs. ExPASy TrEMBL
Match: A0A5D3CTR8 (Protein NUCLEAR FUSION DEFECTIVE 6 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold892G00250 PE=4 SV=1) HSP 1 Score: 146 bits (368), Expect = 7.51e-43 Identity = 79/98 (80.61%), Postives = 84/98 (85.71%), Query Frame = 0
BLAST of Cp4.1LG15g07290 vs. TAIR 10
Match: AT2G20585.1 (nuclear fusion defective 6 ) HSP 1 Score: 69.7 bits (169), Expect = 2.0e-12 Identity = 43/87 (49.43%), Postives = 61/87 (70.11%), Query Frame = 0
BLAST of Cp4.1LG15g07290 vs. TAIR 10
Match: AT2G20585.2 (nuclear fusion defective 6 ) HSP 1 Score: 69.7 bits (169), Expect = 2.0e-12 Identity = 43/87 (49.43%), Postives = 61/87 (70.11%), Query Frame = 0
BLAST of Cp4.1LG15g07290 vs. TAIR 10
Match: AT2G20585.3 (nuclear fusion defective 6 ) HSP 1 Score: 68.2 bits (165), Expect = 5.9e-12 Identity = 42/86 (48.84%), Postives = 60/86 (69.77%), Query Frame = 0
BLAST of Cp4.1LG15g07290 vs. TAIR 10
Match: AT2G33847.1 (unknown protein; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G28395.4); Has 74 Blast hits to 74 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 74; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 64.7 bits (156), Expect = 6.6e-11 Identity = 40/80 (50.00%), Postives = 54/80 (67.50%), Query Frame = 0
BLAST of Cp4.1LG15g07290 vs. TAIR 10
Match: AT2G33847.2 (unknown protein; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G28395.3); Has 71 Blast hits to 71 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 71; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 64.7 bits (156), Expect = 6.6e-11 Identity = 40/80 (50.00%), Postives = 54/80 (67.50%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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