Cp4.1LG15g07290.1 (mRNA) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG15g07290.1
TypemRNA
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Descriptionprotein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X2
LocationCp4.1LG15: 7580725 .. 7581602 (-)
Sequence length579
RNA-Seq ExpressionCp4.1LG15g07290.1
SyntenyCp4.1LG15g07290.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AGAAGGGTAAAAAAAAGAAAAGTATAAAAGGAAAAAAAAGAAAAAACCCCCTCGTTTTCTCGATCAACGGAAGTAGGGTTTAGCATTTGAATGCCCTAAATCTGAGACGGAACTCTGTTTATCGTGGCTGACTGCACATAATTTTTCGCCGCGCTCTCAGATTTTACGATGGCTTCCTTTGCCGCCAGGGCCATTTCCCGATCCTCCTTCGGCAAGGCTGCGACTCTTCTGAGCGTCGGAGCCAGAGCAGCTCCGGCTCGTTCACCATTTCGCATTGCTTCTAAACGACCTATCTCTCAGTGTGCTGTAAGGTAAATTCCTCACAAGCATTCGATTTCGACGAAACGTTCTCGATGTAAATTAATTATGAAAACTCTGTGAGTTGAGTTGTTCCATATGTGATGTTTTTCTTTTTCTCTTTTTCTATGAAGGCTTCCAGTTGAAATGAGTTTCTGTGTGGAGTCCATGCTTCCCTTCCATTCTGCTACTTCTTCGGCATTAATGACTTCGATGCTTTCTGTCTCTCGCCATAGTTATGGTTGGCTTTCAGAAGGTACTTTCTGTCTCTTCTAATTCTTCTAGTAGTTTATATGGATGCGACTAAGTTATGAGCCAAGAGTTGTTGCCTCCGTGTTCTGCATCTATACTAGAGTGAATTTTACTTTTTCCAATGTTCTCGTTATACTGCCACTATTAAGGTTTCTGATTTCTGTTGGCCTAAAAACTGAATAGCTGTGTTGGTCGAATACGACCTCAGCTTCATTGGTTACTTGGATTGCCTTTGTGATGTACAACCGATGGGGGATAACATGTGTACACAATTGATCCTATATATTTGGCCCTTAGAATGCAGGATGAAAAGGAGGAGGATGGAATAG

mRNA sequence

AGAAGGGTAAAAAAAAGAAAAGTATAAAAGGAAAAAAAAGAAAAAACCCCCTCGTTTTCTCGATCAACGGAAGTAGGGTTTAGCATTTGAATGCCCTAAATCTGAGACGGAACTCTGTTTATCGTGGCTGACTGCACATAATTTTTCGCCGCGCTCTCAGATTTTACGATGGCTTCCTTTGCCGCCAGGGCCATTTCCCGATCCTCCTTCGGCAAGGCTGCGACTCTTCTGAGCGTCGGAGCCAGAGCAGCTCCGGCTCGTTCACCATTTCGCATTGCTTCTAAACGACCTATCTCTCAGTGTGCTGTAAGGCTTCCAGTTGAAATGAGTTTCTGTGTGGAGTCCATGCTTCCCTTCCATTCTGCTACTTCTTCGGCATTAATGACTTCGATGCTTTCTGTCTCTCGCCATAGTTATGGTTGGCTTTCAGAAGCTGTGTTGGTCGAATACGACCTCAGCTTCATTGGTTACTTGGATTGCCTTTGTGATGTACAACCGATGGGGGATAACATGTGTACACAATTGATCCTATATATTTGGCCCTTAGAATGCAGGATGAAAAGGAGGAGGATGGAATAG

Coding sequence (CDS)

ATGGCTTCCTTTGCCGCCAGGGCCATTTCCCGATCCTCCTTCGGCAAGGCTGCGACTCTTCTGAGCGTCGGAGCCAGAGCAGCTCCGGCTCGTTCACCATTTCGCATTGCTTCTAAACGACCTATCTCTCAGTGTGCTGTAAGGCTTCCAGTTGAAATGAGTTTCTGTGTGGAGTCCATGCTTCCCTTCCATTCTGCTACTTCTTCGGCATTAATGACTTCGATGCTTTCTGTCTCTCGCCATAGTTATGGTTGGCTTTCAGAAGCTGTGTTGGTCGAATACGACCTCAGCTTCATTGGTTACTTGGATTGCCTTTGTGATGTACAACCGATGGGGGATAACATGTGTACACAATTGATCCTATATATTTGGCCCTTAGAATGCAGGATGAAAAGGAGGAGGATGGAATAG

Protein sequence

MASFAARAISRSSFGKAATLLSVGARAAPARSPFRIASKRPISQCAVRLPVEMSFCVESMLPFHSATSSALMTSMLSVSRHSYGWLSEAVLVEYDLSFIGYLDCLCDVQPMGDNMCTQLILYIWPLECRMKRRRME
Homology
BLAST of Cp4.1LG15g07290.1 vs. ExPASy Swiss-Prot
Match: Q93ZJ3 (Protein NUCLEAR FUSION DEFECTIVE 6, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=NFD6 PE=3 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 2.9e-11
Identity = 43/87 (49.43%), Postives = 61/87 (70.11%), Query Frame = 0

Query: 6  ARAISRSSFGKAATLLSVGARAAPARSP---FRIASKRPISQCAVRLPVEMSFCVESMLP 65
          AR++ R++  ++A   S G  A+ A+S    FR  ++R      +R PVE+SFCVES+LP
Sbjct: 10 ARSMLRAASSRSAA-ASTGRFASQAKSAPPLFRATARRSPLLSPLRNPVELSFCVESLLP 69

Query: 66 FHSATSSALMTSMLSVSRHSYGWLSEA 90
          +HSAT+SALMTS LS+S  +YGWLS+A
Sbjct: 70 YHSATASALMTSKLSISGQTYGWLSDA 95

BLAST of Cp4.1LG15g07290.1 vs. NCBI nr
Match: XP_023554651.1 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 164 bits (415), Expect = 7.72e-50
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 0

Query: 1  MASFAARAISRSSFGKAATLLSVGARAAPARSPFRIASKRPISQCAVRLPVEMSFCVESM 60
          MASFAARAISRSSFGKAATLLSVGARAAPARSPFRIASKRPISQCAVRLPVEMSFCVESM
Sbjct: 1  MASFAARAISRSSFGKAATLLSVGARAAPARSPFRIASKRPISQCAVRLPVEMSFCVESM 60

Query: 61 LPFHSATSSALMTSMLSVSRHSYGWLSE 88
          LPFHSATSSALMTSMLSVSRHSYGWLSE
Sbjct: 61 LPFHSATSSALMTSMLSVSRHSYGWLSE 88

BLAST of Cp4.1LG15g07290.1 vs. NCBI nr
Match: XP_023554650.1 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 164 bits (415), Expect = 7.97e-50
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 0

Query: 1  MASFAARAISRSSFGKAATLLSVGARAAPARSPFRIASKRPISQCAVRLPVEMSFCVESM 60
          MASFAARAISRSSFGKAATLLSVGARAAPARSPFRIASKRPISQCAVRLPVEMSFCVESM
Sbjct: 1  MASFAARAISRSSFGKAATLLSVGARAAPARSPFRIASKRPISQCAVRLPVEMSFCVESM 60

Query: 61 LPFHSATSSALMTSMLSVSRHSYGWLSE 88
          LPFHSATSSALMTSMLSVSRHSYGWLSE
Sbjct: 61 LPFHSATSSALMTSMLSVSRHSYGWLSE 88

BLAST of Cp4.1LG15g07290.1 vs. NCBI nr
Match: XP_022969310.1 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 157 bits (397), Expect = 4.26e-47
Identity = 84/88 (95.45%), Postives = 86/88 (97.73%), Query Frame = 0

Query: 1  MASFAARAISRSSFGKAATLLSVGARAAPARSPFRIASKRPISQCAVRLPVEMSFCVESM 60
          MASFAARAISRSSFG+AATLLSVG+RAAPARS FRIASKRP SQCAVRLPVEMSFCVESM
Sbjct: 1  MASFAARAISRSSFGRAATLLSVGSRAAPARSSFRIASKRPFSQCAVRLPVEMSFCVESM 60

Query: 61 LPFHSATSSALMTSMLSVSRHSYGWLSE 88
          LPFHSATSSALMTSMLSVSRHSYGWLSE
Sbjct: 61 LPFHSATSSALMTSMLSVSRHSYGWLSE 88

BLAST of Cp4.1LG15g07290.1 vs. NCBI nr
Match: XP_022969309.1 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 157 bits (397), Expect = 4.40e-47
Identity = 84/88 (95.45%), Postives = 86/88 (97.73%), Query Frame = 0

Query: 1  MASFAARAISRSSFGKAATLLSVGARAAPARSPFRIASKRPISQCAVRLPVEMSFCVESM 60
          MASFAARAISRSSFG+AATLLSVG+RAAPARS FRIASKRP SQCAVRLPVEMSFCVESM
Sbjct: 1  MASFAARAISRSSFGRAATLLSVGSRAAPARSSFRIASKRPFSQCAVRLPVEMSFCVESM 60

Query: 61 LPFHSATSSALMTSMLSVSRHSYGWLSE 88
          LPFHSATSSALMTSMLSVSRHSYGWLSE
Sbjct: 61 LPFHSATSSALMTSMLSVSRHSYGWLSE 88

BLAST of Cp4.1LG15g07290.1 vs. NCBI nr
Match: XP_022952575.1 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 154 bits (389), Expect = 7.05e-46
Identity = 83/88 (94.32%), Postives = 85/88 (96.59%), Query Frame = 0

Query: 1  MASFAARAISRSSFGKAATLLSVGARAAPARSPFRIASKRPISQCAVRLPVEMSFCVESM 60
          MASFAARAISRSSFGKAATLLSVG+RAAPARS FRIA+KRP SQCAVRLPVEMS CVESM
Sbjct: 1  MASFAARAISRSSFGKAATLLSVGSRAAPARSSFRIAAKRPFSQCAVRLPVEMSCCVESM 60

Query: 61 LPFHSATSSALMTSMLSVSRHSYGWLSE 88
          LPFHSATSSALMTSMLSVSRHSYGWLSE
Sbjct: 61 LPFHSATSSALMTSMLSVSRHSYGWLSE 88

BLAST of Cp4.1LG15g07290.1 vs. ExPASy TrEMBL
Match: A0A6J1HZK6 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111468354 PE=4 SV=1)

HSP 1 Score: 157 bits (397), Expect = 2.06e-47
Identity = 84/88 (95.45%), Postives = 86/88 (97.73%), Query Frame = 0

Query: 1  MASFAARAISRSSFGKAATLLSVGARAAPARSPFRIASKRPISQCAVRLPVEMSFCVESM 60
          MASFAARAISRSSFG+AATLLSVG+RAAPARS FRIASKRP SQCAVRLPVEMSFCVESM
Sbjct: 1  MASFAARAISRSSFGRAATLLSVGSRAAPARSSFRIASKRPFSQCAVRLPVEMSFCVESM 60

Query: 61 LPFHSATSSALMTSMLSVSRHSYGWLSE 88
          LPFHSATSSALMTSMLSVSRHSYGWLSE
Sbjct: 61 LPFHSATSSALMTSMLSVSRHSYGWLSE 88

BLAST of Cp4.1LG15g07290.1 vs. ExPASy TrEMBL
Match: A0A6J1I278 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111468354 PE=4 SV=1)

HSP 1 Score: 157 bits (397), Expect = 2.13e-47
Identity = 84/88 (95.45%), Postives = 86/88 (97.73%), Query Frame = 0

Query: 1  MASFAARAISRSSFGKAATLLSVGARAAPARSPFRIASKRPISQCAVRLPVEMSFCVESM 60
          MASFAARAISRSSFG+AATLLSVG+RAAPARS FRIASKRP SQCAVRLPVEMSFCVESM
Sbjct: 1  MASFAARAISRSSFGRAATLLSVGSRAAPARSSFRIASKRPFSQCAVRLPVEMSFCVESM 60

Query: 61 LPFHSATSSALMTSMLSVSRHSYGWLSE 88
          LPFHSATSSALMTSMLSVSRHSYGWLSE
Sbjct: 61 LPFHSATSSALMTSMLSVSRHSYGWLSE 88

BLAST of Cp4.1LG15g07290.1 vs. ExPASy TrEMBL
Match: A0A6J1GM60 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111455225 PE=4 SV=1)

HSP 1 Score: 154 bits (389), Expect = 3.41e-46
Identity = 83/88 (94.32%), Postives = 85/88 (96.59%), Query Frame = 0

Query: 1  MASFAARAISRSSFGKAATLLSVGARAAPARSPFRIASKRPISQCAVRLPVEMSFCVESM 60
          MASFAARAISRSSFGKAATLLSVG+RAAPARS FRIA+KRP SQCAVRLPVEMS CVESM
Sbjct: 1  MASFAARAISRSSFGKAATLLSVGSRAAPARSSFRIAAKRPFSQCAVRLPVEMSCCVESM 60

Query: 61 LPFHSATSSALMTSMLSVSRHSYGWLSE 88
          LPFHSATSSALMTSMLSVSRHSYGWLSE
Sbjct: 61 LPFHSATSSALMTSMLSVSRHSYGWLSE 88

BLAST of Cp4.1LG15g07290.1 vs. ExPASy TrEMBL
Match: A0A6J1GM36 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111455225 PE=4 SV=1)

HSP 1 Score: 154 bits (389), Expect = 3.52e-46
Identity = 83/88 (94.32%), Postives = 85/88 (96.59%), Query Frame = 0

Query: 1  MASFAARAISRSSFGKAATLLSVGARAAPARSPFRIASKRPISQCAVRLPVEMSFCVESM 60
          MASFAARAISRSSFGKAATLLSVG+RAAPARS FRIA+KRP SQCAVRLPVEMS CVESM
Sbjct: 1  MASFAARAISRSSFGKAATLLSVGSRAAPARSSFRIAAKRPFSQCAVRLPVEMSCCVESM 60

Query: 61 LPFHSATSSALMTSMLSVSRHSYGWLSE 88
          LPFHSATSSALMTSMLSVSRHSYGWLSE
Sbjct: 61 LPFHSATSSALMTSMLSVSRHSYGWLSE 88

BLAST of Cp4.1LG15g07290.1 vs. ExPASy TrEMBL
Match: A0A5D3CTR8 (Protein NUCLEAR FUSION DEFECTIVE 6 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold892G00250 PE=4 SV=1)

HSP 1 Score: 146 bits (368), Expect = 7.51e-43
Identity = 79/98 (80.61%), Postives = 84/98 (85.71%), Query Frame = 0

Query: 1  MASFAARAISRSSFGKAATLLSVGARAAPARSPFRIASKRPISQCAVRLPVEMSFCVESM 60
          MASFAARAI RSS GKAATLLS GARAAPARSPFRIASKRP S  + R+P+EMSFCVESM
Sbjct: 1  MASFAARAIFRSSSGKAATLLSAGARAAPARSPFRIASKRPFSHSSFRIPIEMSFCVESM 60

Query: 61 LPFHSATSSALMTSMLSVSRHSYGWLSEAVLVEYDLSF 98
          LPFHSATSSALMTSMLSVS HSYGWLSE +L  +   F
Sbjct: 61 LPFHSATSSALMTSMLSVSPHSYGWLSEGILSAFFFFF 98

BLAST of Cp4.1LG15g07290.1 vs. TAIR 10
Match: AT2G20585.1 (nuclear fusion defective 6 )

HSP 1 Score: 69.7 bits (169), Expect = 2.0e-12
Identity = 43/87 (49.43%), Postives = 61/87 (70.11%), Query Frame = 0

Query: 6  ARAISRSSFGKAATLLSVGARAAPARSP---FRIASKRPISQCAVRLPVEMSFCVESMLP 65
          AR++ R++  ++A   S G  A+ A+S    FR  ++R      +R PVE+SFCVES+LP
Sbjct: 10 ARSMLRAASSRSAA-ASTGRFASQAKSAPPLFRATARRSPLLSPLRNPVELSFCVESLLP 69

Query: 66 FHSATSSALMTSMLSVSRHSYGWLSEA 90
          +HSAT+SALMTS LS+S  +YGWLS+A
Sbjct: 70 YHSATASALMTSKLSISGQTYGWLSDA 95

BLAST of Cp4.1LG15g07290.1 vs. TAIR 10
Match: AT2G20585.2 (nuclear fusion defective 6 )

HSP 1 Score: 69.7 bits (169), Expect = 2.0e-12
Identity = 43/87 (49.43%), Postives = 61/87 (70.11%), Query Frame = 0

Query: 6  ARAISRSSFGKAATLLSVGARAAPARSP---FRIASKRPISQCAVRLPVEMSFCVESMLP 65
          AR++ R++  ++A   S G  A+ A+S    FR  ++R      +R PVE+SFCVES+LP
Sbjct: 10 ARSMLRAASSRSAA-ASTGRFASQAKSAPPLFRATARRSPLLSPLRNPVELSFCVESLLP 69

Query: 66 FHSATSSALMTSMLSVSRHSYGWLSEA 90
          +HSAT+SALMTS LS+S  +YGWLS+A
Sbjct: 70 YHSATASALMTSKLSISGQTYGWLSDA 95

BLAST of Cp4.1LG15g07290.1 vs. TAIR 10
Match: AT2G20585.3 (nuclear fusion defective 6 )

HSP 1 Score: 68.2 bits (165), Expect = 5.9e-12
Identity = 42/86 (48.84%), Postives = 60/86 (69.77%), Query Frame = 0

Query: 6  ARAISRSSFGKAATLLSVGARAAPARSP---FRIASKRPISQCAVRLPVEMSFCVESMLP 65
          AR++ R++  ++A   S G  A+ A+S    FR  ++R      +R PVE+SFCVES+LP
Sbjct: 10 ARSMLRAASSRSAA-ASTGRFASQAKSAPPLFRATARRSPLLSPLRNPVELSFCVESLLP 69

Query: 66 FHSATSSALMTSMLSVSRHSYGWLSE 89
          +HSAT+SALMTS LS+S  +YGWLS+
Sbjct: 70 YHSATASALMTSKLSISGQTYGWLSD 94

BLAST of Cp4.1LG15g07290.1 vs. TAIR 10
Match: AT2G33847.1 (unknown protein; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G28395.4); Has 74 Blast hits to 74 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 74; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 64.7 bits (156), Expect = 6.6e-11
Identity = 40/80 (50.00%), Postives = 54/80 (67.50%), Query Frame = 0

Query: 5  AARAISRSSFGKA--ATLLSVGARAAPARSPFRIASKRPISQCAVRLPVEMSFCVESMLP 64
          AAR++ RS  G+A  A L S     + ARS F++  + P+S    R PVE+S CVE+MLP
Sbjct: 3  AARSVFRSGVGRAAVAALRSTKPMPSSARSSFKLPKQSPLSHRIFRSPVELSCCVETMLP 62

Query: 65 FHSATSSALMTSMLSVSRHS 83
          +H+AT+SAL+ SMLSVS  S
Sbjct: 63 YHTATASALLNSMLSVSGRS 82

BLAST of Cp4.1LG15g07290.1 vs. TAIR 10
Match: AT2G33847.2 (unknown protein; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G28395.3); Has 71 Blast hits to 71 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 71; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 64.7 bits (156), Expect = 6.6e-11
Identity = 40/80 (50.00%), Postives = 54/80 (67.50%), Query Frame = 0

Query: 5  AARAISRSSFGKA--ATLLSVGARAAPARSPFRIASKRPISQCAVRLPVEMSFCVESMLP 64
          AAR++ RS  G+A  A L S     + ARS F++  + P+S    R PVE+S CVE+MLP
Sbjct: 3  AARSVFRSGVGRAAVAALRSTKPMPSSARSSFKLPKQSPLSHRIFRSPVELSCCVETMLP 62

Query: 65 FHSATSSALMTSMLSVSRHS 83
          +H+AT+SAL+ SMLSVS  S
Sbjct: 63 YHTATASALLNSMLSVSGRS 82

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Q93ZJ32.9e-1149.43Protein NUCLEAR FUSION DEFECTIVE 6, mitochondrial OS=Arabidopsis thaliana OX=370... [more]
Match NameE-valueIdentityDescription
XP_023554651.17.72e-50100.00protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X2 ... [more]
XP_023554650.17.97e-50100.00protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1 ... [more]
XP_022969310.14.26e-4795.45protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X2 ... [more]
XP_022969309.14.40e-4795.45protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1 ... [more]
XP_022952575.17.05e-4694.32protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X2 ... [more]
Match NameE-valueIdentityDescription
A0A6J1HZK62.06e-4795.45protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X2 ... [more]
A0A6J1I2782.13e-4795.45protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1 ... [more]
A0A6J1GM603.41e-4694.32protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X2 ... [more]
A0A6J1GM363.52e-4694.32protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1 ... [more]
A0A5D3CTR87.51e-4380.61Protein NUCLEAR FUSION DEFECTIVE 6 OS=Cucumis melo var. makuwa OX=1194695 GN=E56... [more]
Match NameE-valueIdentityDescription
AT2G20585.12.0e-1249.43nuclear fusion defective 6 [more]
AT2G20585.22.0e-1249.43nuclear fusion defective 6 [more]
AT2G20585.35.9e-1248.84nuclear fusion defective 6 [more]
AT2G33847.16.6e-1150.00unknown protein; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein matc... [more]
AT2G33847.26.6e-1150.00unknown protein; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein matc... [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR033251Protein NUCLEAR FUSION DEFECTIVE 6, mitochondrialPANTHERPTHR33156:SF48PROTEIN NUCLEAR FUSION DEFECTIVE 6, CHLOROPLASTIC/MITOCHONDRIALcoord: 3..88
IPR043459NFD6/NOXY2-likePANTHERPTHR33156OS02G0230000 PROTEINcoord: 3..88

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Cp4.1LG15g07290Cp4.1LG15g07290gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cp4.1LG15g07290.1:exon:003Cp4.1LG15g07290.1:exon:003exon
Cp4.1LG15g07290.1:exon:002Cp4.1LG15g07290.1:exon:002exon
Cp4.1LG15g07290.1:exon:001Cp4.1LG15g07290.1:exon:001exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cp4.1LG15g07290.1:cds:001Cp4.1LG15g07290.1:cds:001CDS
Cp4.1LG15g07290.1:cds:002Cp4.1LG15g07290.1:cds:002CDS
Cp4.1LG15g07290.1:cds:003Cp4.1LG15g07290.1:cds:003CDS


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cp4.1LG15g07290.1:five_prime_utr:001Cp4.1LG15g07290.1:five_prime_utr:001five_prime_UTR


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Cp4.1LG15g07290.1Cp4.1LG15g07290.1-proteinpolypeptide


GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000741 karyogamy
cellular_component GO:0016021 integral component of membrane