Cp4.1LG02g02300.1 (mRNA) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG02g02300.1
Type	mRNA
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	Unknown protein
Location	Cp4.1LG02: 3980322 .. 3983188 (+)
Sequence length	409
RNA-Seq Expression	Cp4.1LG02g02300.1
Synteny	Cp4.1LG02g02300.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCCACAGGGTAGGAACCAAATTGTTAAACTTGATTATATCATATTCCCTTTCTCCATCTTCCGGTGGCTCTGCAACTCGAAATGAGCATGACGATGGGCGCTGCGATTACAATCATTATTGTGGCAGGTTCTCTTCTGCTATGGGGATGGAGCTTCCTCAACTGGATTTGGCTGAAACCGAAGAAGCTCGAGAAGCAGTTAAGAGAGCAGGGCCTTGCCGGAAATCCCTATCGCCTTCTCTTTGGCGATTCCAAGGACATGGCGACCGCGATTCGCGAAGCCAGATCCCAGTCCATCAACTTCTCTCATCATATCGCTCATCGCGCCCTCCCTTCCTCGCACCTCACCATCAATAAATACGGTAATCTCTTCCGTTCTTCTCCATTTTGTATTTGCCCTACCTGGATTCCGTTCTTGTCTAAACTCAAATAATTCTTTTGGGATCATTTTTATTTTTCAACTCAAATTTTGGCTGTTGTTAAACCTCATGTTCATCATGGTATCATCTATGTGTATACTTGGTTGGCTTCCTTGTATTCTTAACGCACTTATATTTGTAGGTAAGAATTGTTTCGCGTGGGTTGGACCAACTCCAAGAGTGTATATAACAGACCCTGAACAACTTAAGACTGTCTTTTCTCTCATCAATGACATTCCTAAAGCCCCTTTATTTCCTCCTGCAAGAACCCCCGGAAGTGGCGGACTTGTCTCTCTCGAGGGATCTAAATGGGCTCAACATAGAAAGATCATCAATCCCGCCTTTCATACCCAGAAGTTGAAGGTCTACTACACCCTCTCAATCCCTCTTTTTTCAAGTAGTTAAGATAGCACTTAAGACGACTAAGACAGCTTAGGGTGTTTGCAGGACATGTTTCCAGCGTTCTTTGAGAGTTGTAATGAGATGATTAACAAATGGGAAGTGATGGTCTCTGAGGAAGAAGAAGGGTGTTTCGAGTTAGATGTTTGGCCCGATTTGCAGAATATGACTGCAGATTCGATATCTCGAACAGCATTTGGGAGTAGCTATGAGGAAGGAAAGAAGATCTTCCAGTTTTTGAAAACCTGGGTTTCTTTATTGGTAGCACGCCTAACAAAGGGTGTCTATAACATTCCGGGATGGAGGTAAGATTTGAATGAATTTGAGCTTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTCATAATTAGTTCTTCATTTACTTTAGGTTTGTACCAACCCAGATGAATAGGAAGATGGAGGAGGTTAATAGAGAAATAAAAAGTATGGTTTGGGGAATTATAAGCAAGAGACAAGCGGCTATGGAGGCTGCTCAAGTTTCTAATAATGCTGATCTTCTTGGGATACTTTTGGAAGAAAATAAGAAAGATGCTGTTGGAATGTCTATGGAGGATATCATTAGTGAGTGCAAGCTTTTTTATTTTGCTGGCCAAGAAACGACGGCCTCGTTGCTTGTTTGGACGATGGTTCTACTTGGTCGGTATTCGGAATGGCAAGATCGAGCAAGAGCGGAAGTGCTTGATGTTTTTGGTGAAGACAAGAAAGTAGATTTTGATGGTTTAAATCGTCTCAAAGTAGTAAGTAGCTATGATTAATAGCTTTTTCTTTTCGTTCAACAACATAACGTGCTACGCACTTTTATAAGTCATCTCAAAGTAGTAAGTAGCTATGGTTTAATTCATCTCATGGCCAAGGAATCATTTTTTAATAAGGATGTGAAAACCACTCCCCTAGCGTTTAAAAGCCTTGGGGGTAAACCTGAAACTTCTCCCCTAGCGTCTTAAAGCCTTGGGGGTAAGCCCGAAACCGCTCCCCTAGCATCTTAAAGCCTTGGGGGTAAGCCCGAAACCTCTCCCTAGCGTCTTAAAGCCTTGAGAGGAAGCCCGAAACCTCTCCCTAGCATCTTAAAGCCTTGAGGGGAAGCCCGAAACCTCTCCTTAGCATCTCAAGGCCATGAGAGGAGCTCAAAACAGAAAAACCAAAGAGAGCAATCACTTTAAAGTAGTTTCGATCGGGTATGTTTTGATTACTTCCTGATTTACTTGGAACATGTTGATGTTTGGAACAGGTGAGTATGATACTATATGAAGTTCTCAGGTTATATCCTCCCGTTGGAATCTTAGCTCGAGGAATACACAAGGAAACAAAGCTTGGAAACTTGATATTGCCGGGTGGGGTGTCATTAGGCATACCAATCATTCATATCCACCACGATCACCAAATATGGGGTGAAGATGCAGATGAGTTCAAGCCAGAGAGGTTTTCAGAAGGAATTTCCAAAGCAACAAACAATAAAGTTTGCTTCCTACCATTTGGATGGGGTCCTCGAATTTGTGTTGGTCAAAACTTTGCCATGATTGAAGCAAAAATAGCACTATCAATGATTTTGCAGAGCTTCTCCTTCCAACTTTCCCCATCTTATACTCACTCTCCTGCTTCAAATGTCACTGTTCAACCACAACATGGAGCTCATCTCATCCTCCGTAAGCTCTAATAGTTTCAAAGTTCATATATCATTCCCTTTTTGTGTTGTATAAGTTATGTCTAATATAAATAACTCAATCATTCAGACATTATAATATACTTTGATTTAGCAAAAATAAAGTGTGTTCATAACATGAAATATAATACATTAAGAACATACCAAAAACATAATACAGAATTAAACGAACAAAAAGTTTAAAAAACAAAGCTCAAATTCTGAAAAGCATTAAACCCAGATCAAGCTCATACATTGAACAAAAATGCAAGACAGATCGACCAAGTTCAATCCATAATCTTAACCTGAAATTAGTATATACTCATTTTCTCAATCTACAGAATCGAATCATAGTGATGGTACCAAACGGATATCCAACAGTTACAAAT

mRNA sequence

TCCACAGGGTAGGAACCAAATTGTTAAACTTGATTATATCATATTCCCTTTCTCCATCTTCCGGTGGCTCTGCAACTCGAAATGAGCATGACGATGGGCGCTGCGATTACAATCATTATTGTGGCAGGTTCTCTTCTGCTATGGGGATGGAGCTTCCTCAACTGGATTTGGCTGAAACCGAAGAAGCTCGAGAAGCAGTTAAGAGAGCAGGGCCTTGCCGGAAATCCCTATCGCCTTCTCTTTGGCGATTCCAAGGACATGGCGACCGCGATTCGCGAAGCCAGATCCCAGTCCATCAACTTCTCTCATCATATCGCTCATCGCGCCCTCCCTTCCTCGCACCTCACCATCAATAAATACGAATCGAATCATAGTGATGGTACCAAACGGATATCCAACAGTTACAAAT

Coding sequence (CDS)

ATGGGGATGGAGCTTCCTCAACTGGATTTGGCTGAAACCGAAGAAGCTCGAGAAGCAGTTAAGAGAGCAGGGCCTTGCCGGAAATCCCTATCGCCTTCTCTTTGGCGATTCCAAGGACATGGCGACCGCGATTCGCGAAGCCAGATCCCAGTCCATCAACTTCTCTCATCATATCGCTCATCGCGCCCTCCCTTCCTCGCACCTCACCATCAATAA

Protein sequence

MGMELPQLDLAETEEAREAVKRAGPCRKSLSPSLWRFQGHGDRDSRSQIPVHQLLSSYRSSRPPFLAPHHQ

Homology

The following BLAST results are available for this feature:

BLAST of Cp4.1LG02g02300.1 vs.


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG02g02300.1 vs.


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG02g02300.1 vs.


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG02g02300.1 vs.


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 10..24
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..25

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cp4.1LG02g02300	Cp4.1LG02g02300	gene

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG02g02300.1:five_prime_utr:001	Cp4.1LG02g02300.1:five_prime_utr:001	five_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG02g02300.1:exon:001	Cp4.1LG02g02300.1:exon:001	exon
Cp4.1LG02g02300.1:exon:002	Cp4.1LG02g02300.1:exon:002	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG02g02300.1:cds:001	Cp4.1LG02g02300.1:cds:001	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG02g02300.1:three_prime_utr:002	Cp4.1LG02g02300.1:three_prime_utr:002	three_prime_UTR
Cp4.1LG02g02300.1:three_prime_utr:001	Cp4.1LG02g02300.1:three_prime_utr:001	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG02g02300.1	Cp4.1LG02g02300.1-protein	polypeptide