CmoCh09G001120.1 (mRNA) Cucurbita moschata (Rifu) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGTCGGCCGGACTCGGAAAATGCAGCAAAATCCGCCACATTGTCAGGCTCAGGCAAATGCTCCGACGGTGGCGCAACAAGGCCCGAATGTCTGCTAACCGCATCCCTTCCGACGTACCCGCCGGACATGTGGCTGTCTGCGTTGGAACCAGCTGCCGGCGGTTCGTCGTCAGAGCCACTTACTTGAACCACCCGGTTTTCAAGAAGCTTCTGGTCCAAGCCGAAGAGGAGTACGGGTTCACCAACCAAGGCCCGTTGGCGATCCCTTGCGACGAGTCGGTTTTCGAGGAAGTCATCCGGTTCATCTCCAGATCCGATTCGCCCAACTCGGGGCGGTTCGTGAAATTAGACGAATTTCAAACTTACTGCCATATCGGAATCAGAACCGGCCTCGATTTGTGGCCGGAATCTCGGCCTTTGCTTCATGGGTTAGCCGAGAAATCCATCTGGTAA ATGTCGGCCGGACTCGGAAAATGCAGCAAAATCCGCCACATTGTCAGGCTCAGGCAAATGCTCCGACGGTGGCGCAACAAGGCCCGAATGTCTGCTAACCGCATCCCTTCCGACGTACCCGCCGGACATGTGGCTGTCTGCGTTGGAACCAGCTGCCGGCGGTTCGTCGTCAGAGCCACTTACTTGAACCACCCGGTTTTCAAGAAGCTTCTGGTCCAAGCCGAAGAGGAGTACGGGTTCACCAACCAAGGCCCGTTGGCGATCCCTTGCGACGAGTCGGTTTTCGAGGAAGTCATCCGGTTCATCTCCAGATCCGATTCGCCCAACTCGGGGCGGTTCGTGAAATTAGACGAATTTCAAACTTACTGCCATATCGGAATCAGAACCGGCCTCGATTTGTGGCCGGAATCTCGGCCTTTGCTTCATGGGTTAGCCGAGAAATCCATCTGGTAA ATGTCGGCCGGACTCGGAAAATGCAGCAAAATCCGCCACATTGTCAGGCTCAGGCAAATGCTCCGACGGTGGCGCAACAAGGCCCGAATGTCTGCTAACCGCATCCCTTCCGACGTACCCGCCGGACATGTGGCTGTCTGCGTTGGAACCAGCTGCCGGCGGTTCGTCGTCAGAGCCACTTACTTGAACCACCCGGTTTTCAAGAAGCTTCTGGTCCAAGCCGAAGAGGAGTACGGGTTCACCAACCAAGGCCCGTTGGCGATCCCTTGCGACGAGTCGGTTTTCGAGGAAGTCATCCGGTTCATCTCCAGATCCGATTCGCCCAACTCGGGGCGGTTCGTGAAATTAGACGAATTTCAAACTTACTGCCATATCGGAATCAGAACCGGCCTCGATTTGTGGCCGGAATCTCGGCCTTTGCTTCATGGGTTAGCCGAGAAATCCATCTGGTAA MSAGLGKCSKIRHIVRLRQMLRRWRNKARMSANRIPSDVPAGHVAVCVGTSCRRFVVRATYLNHPVFKKLLVQAEEEYGFTNQGPLAIPCDESVFEEVIRFISRSDSPNSGRFVKLDEFQTYCHIGIRTGLDLWPESRPLLHGLAEKSIW Homology
BLAST of CmoCh09G001120.1 vs. ExPASy Swiss-Prot
Match: O65695 (Auxin-responsive protein SAUR50 OS=Arabidopsis thaliana OX=3702 GN=SAUR50 PE=1 SV=1) HSP 1 Score: 75.1 bits (183), Expect = 7.6e-13 Identity = 40/101 (39.60%), Postives = 58/101 (57.43%), Query Frame = 0
BLAST of CmoCh09G001120.1 vs. ExPASy Swiss-Prot
Match: O64538 (Auxin-responsive protein SAUR40 OS=Arabidopsis thaliana OX=3702 GN=SAUR40 PE=2 SV=1) HSP 1 Score: 74.3 bits (181), Expect = 1.3e-12 Identity = 35/65 (53.85%), Postives = 45/65 (69.23%), Query Frame = 0
BLAST of CmoCh09G001120.1 vs. ExPASy Swiss-Prot
Match: P33083 (Auxin-induced protein 6B OS=Glycine max OX=3847 PE=2 SV=1) HSP 1 Score: 73.9 bits (180), Expect = 1.7e-12 Identity = 39/81 (48.15%), Postives = 52/81 (64.20%), Query Frame = 0
BLAST of CmoCh09G001120.1 vs. ExPASy Swiss-Prot
Match: Q9SGU2 (Auxin-responsive protein SAUR71 OS=Arabidopsis thaliana OX=3702 GN=SAUR71 PE=2 SV=1) HSP 1 Score: 73.9 bits (180), Expect = 1.7e-12 Identity = 38/80 (47.50%), Postives = 46/80 (57.50%), Query Frame = 0
BLAST of CmoCh09G001120.1 vs. ExPASy Swiss-Prot
Match: Q9SA49 (Auxin-responsive protein SAUR41 OS=Arabidopsis thaliana OX=3702 GN=SAUR41 PE=2 SV=1) HSP 1 Score: 70.9 bits (172), Expect = 1.4e-11 Identity = 34/73 (46.58%), Postives = 43/73 (58.90%), Query Frame = 0
BLAST of CmoCh09G001120.1 vs. ExPASy TrEMBL
Match: A0A6J1F8H9 (auxin-induced protein 6B OS=Cucurbita moschata OX=3662 GN=LOC111443278 PE=3 SV=1) HSP 1 Score: 316.2 bits (809), Expect = 7.2e-83 Identity = 150/150 (100.00%), Postives = 150/150 (100.00%), Query Frame = 0
BLAST of CmoCh09G001120.1 vs. ExPASy TrEMBL
Match: A0A6J1IP24 (auxin-induced protein 6B OS=Cucurbita maxima OX=3661 GN=LOC111476970 PE=3 SV=1) HSP 1 Score: 312.8 bits (800), Expect = 7.9e-82 Identity = 148/150 (98.67%), Postives = 149/150 (99.33%), Query Frame = 0
BLAST of CmoCh09G001120.1 vs. ExPASy TrEMBL
Match: A0A5D3E601 (Auxin-induced protein 6B OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G008210 PE=3 SV=1) HSP 1 Score: 307.8 bits (787), Expect = 2.6e-80 Identity = 145/150 (96.67%), Postives = 149/150 (99.33%), Query Frame = 0
BLAST of CmoCh09G001120.1 vs. ExPASy TrEMBL
Match: A0A1S3CRK3 (auxin-induced protein 6B OS=Cucumis melo OX=3656 GN=LOC103503890 PE=3 SV=1) HSP 1 Score: 307.8 bits (787), Expect = 2.6e-80 Identity = 145/150 (96.67%), Postives = 149/150 (99.33%), Query Frame = 0
BLAST of CmoCh09G001120.1 vs. ExPASy TrEMBL
Match: A0A0A0LDJ7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G866530 PE=3 SV=1) HSP 1 Score: 303.9 bits (777), Expect = 3.7e-79 Identity = 145/149 (97.32%), Postives = 148/149 (99.33%), Query Frame = 0
BLAST of CmoCh09G001120.1 vs. NCBI nr
Match: XP_022936801.1 (auxin-induced protein 6B [Cucurbita moschata] >KAG6591279.1 Auxin-responsive protein SAUR50, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 316.2 bits (809), Expect = 1.5e-82 Identity = 150/150 (100.00%), Postives = 150/150 (100.00%), Query Frame = 0
BLAST of CmoCh09G001120.1 vs. NCBI nr
Match: XP_023535898.1 (auxin-induced protein 6B [Cucurbita pepo subsp. pepo]) HSP 1 Score: 315.1 bits (806), Expect = 3.3e-82 Identity = 149/150 (99.33%), Postives = 150/150 (100.00%), Query Frame = 0
BLAST of CmoCh09G001120.1 vs. NCBI nr
Match: XP_022976624.1 (auxin-induced protein 6B [Cucurbita maxima]) HSP 1 Score: 312.8 bits (800), Expect = 1.6e-81 Identity = 148/150 (98.67%), Postives = 149/150 (99.33%), Query Frame = 0
BLAST of CmoCh09G001120.1 vs. NCBI nr
Match: XP_038899268.1 (auxin-induced protein 6B-like [Benincasa hispida]) HSP 1 Score: 310.1 bits (793), Expect = 1.1e-80 Identity = 145/150 (96.67%), Postives = 150/150 (100.00%), Query Frame = 0
BLAST of CmoCh09G001120.1 vs. NCBI nr
Match: XP_011652445.1 (auxin-induced protein 6B [Cucumis sativus]) HSP 1 Score: 308.1 bits (788), Expect = 4.0e-80 Identity = 146/150 (97.33%), Postives = 149/150 (99.33%), Query Frame = 0
BLAST of CmoCh09G001120.1 vs. TAIR 10
Match: AT1G75590.1 (SAUR-like auxin-responsive protein family ) HSP 1 Score: 236.5 bits (602), Expect = 1.4e-62 Identity = 114/154 (74.03%), Postives = 131/154 (85.06%), Query Frame = 0
BLAST of CmoCh09G001120.1 vs. TAIR 10
Match: AT1G19840.1 (SAUR-like auxin-responsive protein family ) HSP 1 Score: 218.8 bits (556), Expect = 3.0e-57 Identity = 109/154 (70.78%), Postives = 125/154 (81.17%), Query Frame = 0
BLAST of CmoCh09G001120.1 vs. TAIR 10
Match: AT5G10990.1 (SAUR-like auxin-responsive protein family ) HSP 1 Score: 206.1 bits (523), Expect = 2.0e-53 Identity = 103/151 (68.21%), Postives = 121/151 (80.13%), Query Frame = 0
BLAST of CmoCh09G001120.1 vs. TAIR 10
Match: AT4G34750.1 (SAUR-like auxin-responsive protein family ) HSP 1 Score: 152.5 bits (384), Expect = 2.6e-37 Identity = 80/152 (52.63%), Postives = 110/152 (72.37%), Query Frame = 0
BLAST of CmoCh09G001120.1 vs. TAIR 10
Match: AT4G34750.2 (SAUR-like auxin-responsive protein family ) HSP 1 Score: 152.5 bits (384), Expect = 2.6e-37 Identity = 80/152 (52.63%), Postives = 110/152 (72.37%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
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