CmoCh06G006830.1 (mRNA) Cucurbita moschata (Rifu) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGAATGTGGTGGTGCAGCAGGAGGTAGAGATGGCTTCCATAGCTACAGAAGGCAACAACCTAAGCCAACCTCGGGTATTTTCATCTCCAAAATTCCCCTTTTACCCTTCGCTTGCACGTTCTATCTCTACATATATTACGTTTTGGTTTCCATTTGTGACATGCATCAAGATCTCTTCATCTTCATCATTTTTGGTTAGTTTCTATTGATTTAGATTTGCATGTATCAAAAAGCTTCAATTTGCCTTCTCTTTCTAATATCTTAATATTTTCGTACAAAGCTCAACTCGGACTTGAATTTCAATGAAAGAGAGCCATTAGCATGGTACACAGGACCAAAATTGAAACCCTAATTTGAAAACACTGGTCGGTTGATTGAACGTTTGAAAAAAAACTAAGTCACGGTGGATAATTTTTAGACTATTGTGTTGTGTTACATGCCATGGCTCCGTGGAGCCAGAAATTTTTTGTAAATAAATTTAAATTTATAGTTTTTTTTGGTACACGTCTTTAATATAATTTTTTTGTCAGATGTGTGAGTTGGCAGTATTGGTGCGTGGCTAATTAACAAATAAAAAAAGGAAAAAATAATAATAAATAAAGGTTAATATCTATGGTCTTTCTGCCCATACAAATAGTAGAAAACTTCTTGCCCTAATTCAGTCTTTTATTCTCCATAACCAAATAATTAACTTACTTCCTTTTTTTACTCCACTTACTTTTTTCAAGCGTTGGGGCCTGATTGATTATTGGTAGTTAATGTAATGAATATATATTTTAATATTTATTATATGAAAATGAAATAATTATAAAAGATTAAAACATTAAGAATTGAATTAAAACTTTGTAATTATTGAGATTATTTATTTAATTTCGTTTTAATTGGTTCTGTCAATTAAAATCTTAAATTATGCTAAATTGATTTATGAAAATTTAAGCTTTTTAATATTTGTTTGATGAATCTGTATAAAGCATTTGGTTTCAGCTTTGAATGTATTGTTGACCACAAATAAGTCATCCTCTGCCAACAACACTCACAACAGCAACCACCAGCAATCAAATAGTCGAAACGTTGCGGCCAACTCCCCTGTGACTGGCTCTATCCCTGCCTCGATCGCTGCTACCAACAATGAGCAGAGCCAACAATGCATTGTGCGGGAGCAAGACCAATATATGCCGATCGCTAATGTGATACGCATCATGCGACGAATCTTACCCTCTCATGCAAAGATATCTGATGATGCAAAGGAAACCATCCAAGAATGCGTGTCTGAGTACATCAGCTTCATTACTGGTGAGGCCAACGAGCGATGCCAAAGGGAGCAGCGTAAGACAGTAACAGCAGAGGATGTCCTTTGGGCCATGGGGAAGCTAGGGTTTGACGATTACATTGAGCCATTAACTGTCTTTCTCAATCGCTACCGCGAGTCGGAGAGTGATCGAATGCGTACGGAACCGATCCTGAGGCGCAATGTAGATTATGGACCACAAGTCGGGATGGTAACACCGTATGGCCAGACATTTCAGATAGGGCACGTCCCAATAGGAATGTTTGATGCAATGGGCGGGTACTACGATGGAGGTGGCAATGGCGGGTCGAGCTCGGGCAATGGTAGTCAACTTTGA ATGGAATGTGGTGGTGCAGCAGGAGGTAGAGATGGCTTCCATAGCTACAGAAGGCAACAACCTAAGCCAACCTCGGCTTTGAATGTATTGTTGACCACAAATAAGTCATCCTCTGCCAACAACACTCACAACAGCAACCACCAGCAATCAAATAGTCGAAACGTTGCGGCCAACTCCCCTGTGACTGGCTCTATCCCTGCCTCGATCGCTGCTACCAACAATGAGCAGAGCCAACAATGCATTGTGCGGGAGCAAGACCAATATATGCCGATCGCTAATGTGATACGCATCATGCGACGAATCTTACCCTCTCATGCAAAGATATCTGATGATGCAAAGGAAACCATCCAAGAATGCGTGTCTGAGTACATCAGCTTCATTACTGGTGAGGCCAACGAGCGATGCCAAAGGGAGCAGCGTAAGACAGTAACAGCAGAGGATGTCCTTTGGGCCATGGGGAAGCTAGGGTTTGACGATTACATTGAGCCATTAACTGTCTTTCTCAATCGCTACCGCGAGTCGGAGAGTGATCGAATGCGTACGGAACCGATCCTGAGGCGCAATGTAGATTATGGACCACAAGTCGGGATGGTAACACCGTATGGCCAGACATTTCAGATAGGGCACGTCCCAATAGGAATGTTTGATGCAATGGGCGGGTACTACGATGGAGGTGGCAATGGCGGGTCGAGCTCGGGCAATGGTAGTCAACTTTGA ATGGAATGTGGTGGTGCAGCAGGAGGTAGAGATGGCTTCCATAGCTACAGAAGGCAACAACCTAAGCCAACCTCGGCTTTGAATGTATTGTTGACCACAAATAAGTCATCCTCTGCCAACAACACTCACAACAGCAACCACCAGCAATCAAATAGTCGAAACGTTGCGGCCAACTCCCCTGTGACTGGCTCTATCCCTGCCTCGATCGCTGCTACCAACAATGAGCAGAGCCAACAATGCATTGTGCGGGAGCAAGACCAATATATGCCGATCGCTAATGTGATACGCATCATGCGACGAATCTTACCCTCTCATGCAAAGATATCTGATGATGCAAAGGAAACCATCCAAGAATGCGTGTCTGAGTACATCAGCTTCATTACTGGTGAGGCCAACGAGCGATGCCAAAGGGAGCAGCGTAAGACAGTAACAGCAGAGGATGTCCTTTGGGCCATGGGGAAGCTAGGGTTTGACGATTACATTGAGCCATTAACTGTCTTTCTCAATCGCTACCGCGAGTCGGAGAGTGATCGAATGCGTACGGAACCGATCCTGAGGCGCAATGTAGATTATGGACCACAAGTCGGGATGGTAACACCGTATGGCCAGACATTTCAGATAGGGCACGTCCCAATAGGAATGTTTGATGCAATGGGCGGGTACTACGATGGAGGTGGCAATGGCGGGTCGAGCTCGGGCAATGGTAGTCAACTTTGA MECGGAAGGRDGFHSYRRQQPKPTSALNVLLTTNKSSSANNTHNSNHQQSNSRNVAANSPVTGSIPASIAATNNEQSQQCIVREQDQYMPIANVIRIMRRILPSHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTVTAEDVLWAMGKLGFDDYIEPLTVFLNRYRESESDRMRTEPILRRNVDYGPQVGMVTPYGQTFQIGHVPIGMFDAMGGYYDGGGNGGSSSGNGSQL Homology
BLAST of CmoCh06G006830.1 vs. ExPASy Swiss-Prot
Match: Q9SFD8 (Nuclear transcription factor Y subunit B-9 OS=Arabidopsis thaliana OX=3702 GN=NFYB9 PE=1 SV=2) HSP 1 Score: 196.1 bits (497), Expect = 4.7e-49 Identity = 114/193 (59.07%), Postives = 132/193 (68.39%), Query Frame = 0
BLAST of CmoCh06G006830.1 vs. ExPASy Swiss-Prot
Match: Q84W66 (Nuclear transcription factor Y subunit B-6 OS=Arabidopsis thaliana OX=3702 GN=NFYB6 PE=1 SV=2) HSP 1 Score: 183.7 bits (465), Expect = 2.4e-45 Identity = 99/169 (58.58%), Postives = 115/169 (68.05%), Query Frame = 0
BLAST of CmoCh06G006830.1 vs. ExPASy Swiss-Prot
Match: O23310 (Nuclear transcription factor Y subunit B-3 OS=Arabidopsis thaliana OX=3702 GN=NFYB3 PE=1 SV=1) HSP 1 Score: 145.6 bits (366), Expect = 7.2e-34 Identity = 64/99 (64.65%), Postives = 86/99 (86.87%), Query Frame = 0
BLAST of CmoCh06G006830.1 vs. ExPASy Swiss-Prot
Match: Q9FGJ3 (Nuclear transcription factor Y subunit B-2 OS=Arabidopsis thaliana OX=3702 GN=NFYB2 PE=1 SV=1) HSP 1 Score: 145.2 bits (365), Expect = 9.4e-34 Identity = 83/176 (47.16%), Postives = 114/176 (64.77%), Query Frame = 0
BLAST of CmoCh06G006830.1 vs. ExPASy Swiss-Prot
Match: Q60EQ4 (Nuclear transcription factor Y subunit B-3 OS=Oryza sativa subsp. japonica OX=39947 GN=NFYB3 PE=1 SV=2) HSP 1 Score: 142.5 bits (358), Expect = 6.1e-33 Identity = 62/100 (62.00%), Postives = 84/100 (84.00%), Query Frame = 0
BLAST of CmoCh06G006830.1 vs. ExPASy TrEMBL
Match: A0A6J1FYN7 (nuclear transcription factor Y subunit B-9-like OS=Cucurbita moschata OX=3662 GN=LOC111448893 PE=3 SV=1) HSP 1 Score: 468.8 bits (1205), Expect = 1.4e-128 Identity = 238/238 (100.00%), Postives = 238/238 (100.00%), Query Frame = 0
BLAST of CmoCh06G006830.1 vs. ExPASy TrEMBL
Match: A0A6J1KTC3 (nuclear transcription factor Y subunit B-3-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111498480 PE=3 SV=1) HSP 1 Score: 423.3 bits (1087), Expect = 6.6e-115 Identity = 218/238 (91.60%), Postives = 224/238 (94.12%), Query Frame = 0
BLAST of CmoCh06G006830.1 vs. ExPASy TrEMBL
Match: A0A6J1KV71 (nuclear transcription factor Y subunit B-9-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111498480 PE=3 SV=1) HSP 1 Score: 412.9 bits (1060), Expect = 9.0e-112 Identity = 217/251 (86.45%), Postives = 224/251 (89.24%), Query Frame = 0
BLAST of CmoCh06G006830.1 vs. ExPASy TrEMBL
Match: A0A6J1GJB5 (nuclear transcription factor Y subunit B-9-like OS=Cucurbita moschata OX=3662 GN=LOC111454760 PE=3 SV=1) HSP 1 Score: 361.7 bits (927), Expect = 2.4e-96 Identity = 189/214 (88.32%), Postives = 197/214 (92.06%), Query Frame = 0
BLAST of CmoCh06G006830.1 vs. ExPASy TrEMBL
Match: A0A1S3BKV5 (nuclear transcription factor Y subunit B-9 OS=Cucumis melo OX=3656 GN=LOC103491142 PE=3 SV=1) HSP 1 Score: 343.2 bits (879), Expect = 8.7e-91 Identity = 172/210 (81.90%), Postives = 185/210 (88.10%), Query Frame = 0
BLAST of CmoCh06G006830.1 vs. TAIR 10
Match: AT1G21970.1 (Histone superfamily protein ) HSP 1 Score: 196.1 bits (497), Expect = 3.3e-50 Identity = 114/193 (59.07%), Postives = 132/193 (68.39%), Query Frame = 0
BLAST of CmoCh06G006830.1 vs. TAIR 10
Match: AT5G47670.2 (nuclear factor Y, subunit B6 ) HSP 1 Score: 187.2 bits (474), Expect = 1.5e-47 Identity = 88/107 (82.24%), Postives = 100/107 (93.46%), Query Frame = 0
BLAST of CmoCh06G006830.1 vs. TAIR 10
Match: AT5G47670.1 (nuclear factor Y, subunit B6 ) HSP 1 Score: 183.7 bits (465), Expect = 1.7e-46 Identity = 99/169 (58.58%), Postives = 115/169 (68.05%), Query Frame = 0
BLAST of CmoCh06G006830.1 vs. TAIR 10
Match: AT4G14540.1 (nuclear factor Y, subunit B3 ) HSP 1 Score: 145.6 bits (366), Expect = 5.1e-35 Identity = 64/99 (64.65%), Postives = 86/99 (86.87%), Query Frame = 0
BLAST of CmoCh06G006830.1 vs. TAIR 10
Match: AT5G47640.1 (nuclear factor Y, subunit B2 ) HSP 1 Score: 145.2 bits (365), Expect = 6.7e-35 Identity = 83/176 (47.16%), Postives = 114/176 (64.77%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
|