CmoCh06G006830 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh06G006830
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	nuclear transcription factor Y subunit B-9-like
Location	Cmo_Chr06: 3472988 .. 3474614 (+)
RNA-Seq Expression	CmoCh06G006830
Synteny	CmoCh06G006830

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAATGTGGTGGTGCAGCAGGAGGTAGAGATGGCTTCCATAGCTACAGAAGGCAACAACCTAAGCCAACCTCGGGTATTTTCATCTCCAAAATTCCCCTTTTACCCTTCGCTTGCACGTTCTATCTCTACATATATTACGTTTTGGTTTCCATTTGTGACATGCATCAAGATCTCTTCATCTTCATCATTTTTGGTTAGTTTCTATTGATTTAGATTTGCATGTATCAAAAAGCTTCAATTTGCCTTCTCTTTCTAATATCTTAATATTTTCGTACAAAGCTCAACTCGGACTTGAATTTCAATGAAAGAGAGCCATTAGCATGGTACACAGGACCAAAATTGAAACCCTAATTTGAAAACACTGGTCGGTTGATTGAACGTTTGAAAAAAAACTAAGTCACGGTGGATAATTTTTAGACTATTGTGTTGTGTTACATGCCATGGCTCCGTGGAGCCAGAAATTTTTTGTAAATAAATTTAAATTTATAGTTTTTTTTGGTACACGTCTTTAATATAATTTTTTTGTCAGATGTGTGAGTTGGCAGTATTGGTGCGTGGCTAATTAACAAATAAAAAAAGGAAAAAATAATAATAAATAAAGGTTAATATCTATGGTCTTTCTGCCCATACAAATAGTAGAAAACTTCTTGCCCTAATTCAGTCTTTTATTCTCCATAACCAAATAATTAACTTACTTCCTTTTTTTACTCCACTTACTTTTTTCAAGCGTTGGGGCCTGATTGATTATTGGTAGTTAATGTAATGAATATATATTTTAATATTTATTATATGAAAATGAAATAATTATAAAAGATTAAAACATTAAGAATTGAATTAAAACTTTGTAATTATTGAGATTATTTATTTAATTTCGTTTTAATTGGTTCTGTCAATTAAAATCTTAAATTATGCTAAATTGATTTATGAAAATTTAAGCTTTTTAATATTTGTTTGATGAATCTGTATAAAGCATTTGGTTTCAGCTTTGAATGTATTGTTGACCACAAATAAGTCATCCTCTGCCAACAACACTCACAACAGCAACCACCAGCAATCAAATAGTCGAAACGTTGCGGCCAACTCCCCTGTGACTGGCTCTATCCCTGCCTCGATCGCTGCTACCAACAATGAGCAGAGCCAACAATGCATTGTGCGGGAGCAAGACCAATATATGCCGATCGCTAATGTGATACGCATCATGCGACGAATCTTACCCTCTCATGCAAAGATATCTGATGATGCAAAGGAAACCATCCAAGAATGCGTGTCTGAGTACATCAGCTTCATTACTGGTGAGGCCAACGAGCGATGCCAAAGGGAGCAGCGTAAGACAGTAACAGCAGAGGATGTCCTTTGGGCCATGGGGAAGCTAGGGTTTGACGATTACATTGAGCCATTAACTGTCTTTCTCAATCGCTACCGCGAGTCGGAGAGTGATCGAATGCGTACGGAACCGATCCTGAGGCGCAATGTAGATTATGGACCACAAGTCGGGATGGTAACACCGTATGGCCAGACATTTCAGATAGGGCACGTCCCAATAGGAATGTTTGATGCAATGGGCGGGTACTACGATGGAGGTGGCAATGGCGGGTCGAGCTCGGGCAATGGTAGTCAACTTTGA

mRNA sequence

ATGGAATGTGGTGGTGCAGCAGGAGGTAGAGATGGCTTCCATAGCTACAGAAGGCAACAACCTAAGCCAACCTCGGCTTTGAATGTATTGTTGACCACAAATAAGTCATCCTCTGCCAACAACACTCACAACAGCAACCACCAGCAATCAAATAGTCGAAACGTTGCGGCCAACTCCCCTGTGACTGGCTCTATCCCTGCCTCGATCGCTGCTACCAACAATGAGCAGAGCCAACAATGCATTGTGCGGGAGCAAGACCAATATATGCCGATCGCTAATGTGATACGCATCATGCGACGAATCTTACCCTCTCATGCAAAGATATCTGATGATGCAAAGGAAACCATCCAAGAATGCGTGTCTGAGTACATCAGCTTCATTACTGGTGAGGCCAACGAGCGATGCCAAAGGGAGCAGCGTAAGACAGTAACAGCAGAGGATGTCCTTTGGGCCATGGGGAAGCTAGGGTTTGACGATTACATTGAGCCATTAACTGTCTTTCTCAATCGCTACCGCGAGTCGGAGAGTGATCGAATGCGTACGGAACCGATCCTGAGGCGCAATGTAGATTATGGACCACAAGTCGGGATGGTAACACCGTATGGCCAGACATTTCAGATAGGGCACGTCCCAATAGGAATGTTTGATGCAATGGGCGGGTACTACGATGGAGGTGGCAATGGCGGGTCGAGCTCGGGCAATGGTAGTCAACTTTGA

Coding sequence (CDS)

ATGGAATGTGGTGGTGCAGCAGGAGGTAGAGATGGCTTCCATAGCTACAGAAGGCAACAACCTAAGCCAACCTCGGCTTTGAATGTATTGTTGACCACAAATAAGTCATCCTCTGCCAACAACACTCACAACAGCAACCACCAGCAATCAAATAGTCGAAACGTTGCGGCCAACTCCCCTGTGACTGGCTCTATCCCTGCCTCGATCGCTGCTACCAACAATGAGCAGAGCCAACAATGCATTGTGCGGGAGCAAGACCAATATATGCCGATCGCTAATGTGATACGCATCATGCGACGAATCTTACCCTCTCATGCAAAGATATCTGATGATGCAAAGGAAACCATCCAAGAATGCGTGTCTGAGTACATCAGCTTCATTACTGGTGAGGCCAACGAGCGATGCCAAAGGGAGCAGCGTAAGACAGTAACAGCAGAGGATGTCCTTTGGGCCATGGGGAAGCTAGGGTTTGACGATTACATTGAGCCATTAACTGTCTTTCTCAATCGCTACCGCGAGTCGGAGAGTGATCGAATGCGTACGGAACCGATCCTGAGGCGCAATGTAGATTATGGACCACAAGTCGGGATGGTAACACCGTATGGCCAGACATTTCAGATAGGGCACGTCCCAATAGGAATGTTTGATGCAATGGGCGGGTACTACGATGGAGGTGGCAATGGCGGGTCGAGCTCGGGCAATGGTAGTCAACTTTGA

Protein sequence

MECGGAAGGRDGFHSYRRQQPKPTSALNVLLTTNKSSSANNTHNSNHQQSNSRNVAANSPVTGSIPASIAATNNEQSQQCIVREQDQYMPIANVIRIMRRILPSHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTVTAEDVLWAMGKLGFDDYIEPLTVFLNRYRESESDRMRTEPILRRNVDYGPQVGMVTPYGQTFQIGHVPIGMFDAMGGYYDGGGNGGSSSGNGSQL

Homology

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BLAST of CmoCh06G006830 vs. ExPASy Swiss-Prot
Match: Q9SFD8 (Nuclear transcription factor Y subunit B-9 OS=Arabidopsis thaliana OX=3702 GN=NFYB9 PE=1 SV=2)

HSP 1 Score: 196.1 bits (497), Expect = 4.7e-49
Identity = 114/193 (59.07%), Postives = 132/193 (68.39%), Query Frame = 0


Query: 59  SPVTGSIPASIAATNN-----EQSQQCIVREQDQYMPIANVIRIMRRILPSHAKISDDAK 118
           +P+T S+  + A   N     +Q   C+ REQDQYMPIANVIRIMR+ LPSHAKISDDAK
Sbjct: 29  TPMTSSVVVAGAGDKNNGIVVQQQPPCVAREQDQYMPIANVIRIMRKTLPSHAKISDDAK 88

Query: 119 ETIQECVSEYISFITGEANERCQREQRKTVTAEDVLWAMGKLGFDDYIEPLTVFLNRYRE 178
           ETIQECVSEYISF+TGEANERCQREQRKT+TAED+LWAM KLGFD+Y++PLTVF+NRYRE
Sbjct: 89  ETIQECVSEYISFVTGEANERCQREQRKTITAEDILWAMSKLGFDNYVDPLTVFINRYRE 148

Query: 179 SESDR---MRTEPILRRNVDYGPQVGMVTPYGQTFQIGHVPIGMFD---AMGG--YYDGG 237
            E+DR   +R EP   R    G  +G   P       G    GM D    MGG  YY  G
Sbjct: 149 IETDRGSALRGEPPSLRQTYGGNGIGFHGPSHGLPPPGPYGYGMLDQSMVMGGGRYYQNG 208

[Close]

BLAST of CmoCh06G006830 vs. ExPASy Swiss-Prot
Match: Q84W66 (Nuclear transcription factor Y subunit B-6 OS=Arabidopsis thaliana OX=3702 GN=NFYB6 PE=1 SV=2)

HSP 1 Score: 183.7 bits (465), Expect = 2.4e-45
Identity = 99/169 (58.58%), Postives = 115/169 (68.05%), Query Frame = 0


Query: 10  RDGFHSYRRQQPKPTSALNVLLTTNKSSSANNTHNSNHQQSNSRNVAANSPVTGSIPASI 69
           R GFH YR+     T+     L  N   +  +       Q N                  
Sbjct: 3   RGGFHGYRKLSVNNTTPSPPGLAANFLMAEGSMRPPEFNQPNK----------------- 62

Query: 70  AATNNEQSQQCIVREQDQYMPIANVIRIMRRILPSHAKISDDAKETIQECVSEYISFITG 129
             T+N   ++C VREQD++MPIANVIRIMRRILP+HAKISDD+KETIQECVSEYISFITG
Sbjct: 63  --TSNGGEEECTVREQDRFMPIANVIRIMRRILPAHAKISDDSKETIQECVSEYISFITG 122

Query: 130 EANERCQREQRKTVTAEDVLWAMGKLGFDDYIEPLTVFLNRYRESESDR 179
           EANERCQREQRKT+TAEDVLWAM KLGFDDYIEPLT++L+RYRE E +R
Sbjct: 123 EANERCQREQRKTITAEDVLWAMSKLGFDDYIEPLTLYLHRYRELEGER 152

[Close]

BLAST of CmoCh06G006830 vs. ExPASy Swiss-Prot
Match: O23310 (Nuclear transcription factor Y subunit B-3 OS=Arabidopsis thaliana OX=3702 GN=NFYB3 PE=1 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 7.2e-34
Identity = 64/99 (64.65%), Postives = 86/99 (86.87%), Query Frame = 0


Query: 83  REQDQYMPIANVIRIMRRILPSHAKISDDAKETIQECVSEYISFITGEANERCQREQRKT 142
           REQD+++PIANV RIM++ LP++AKIS DAKET+QECVSE+ISFITGEA+++CQRE+RKT
Sbjct: 20  REQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKT 79

Query: 143 VTAEDVLWAMGKLGFDDYIEPLTVFLNRYRESESDRMRT 182
           +  +D+LWAM  LGF+DY+EPL V+L +YRE E ++  T
Sbjct: 80  INGDDLLWAMTTLGFEDYVEPLKVYLQKYREVEGEKTTT 118

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BLAST of CmoCh06G006830 vs. ExPASy Swiss-Prot
Match: Q9FGJ3 (Nuclear transcription factor Y subunit B-2 OS=Arabidopsis thaliana OX=3702 GN=NFYB2 PE=1 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 9.4e-34
Identity = 83/176 (47.16%), Postives = 114/176 (64.77%), Query Frame = 0


Query: 73  NNEQSQQCI-VREQDQYMPIANVIRIMRRILPSHAKISDDAKETIQECVSEYISFITGEA 132
           NN+  Q  +  REQD+++PIANV RIM++ LP++AKIS DAKET+QECVSE+ISF+TGEA
Sbjct: 15  NNQNGQSSLSPREQDRFLPIANVSRIMKKALPANAKISKDAKETMQECVSEFISFVTGEA 74

Query: 133 NERCQREQRKTVTAEDVLWAMGKLGFDDYIEPLTVFLNRYRESESDRM------------ 192
           +++CQ+E+RKT+  +D+LWAM  LGF+DY+EPL V+L R+RE E +R             
Sbjct: 75  SDKCQKEKRKTINGDDLLWAMTTLGFEDYVEPLKVYLQRFREIEGERTGLGRPQTGGEVG 134

Query: 193 --RTEPILRRNVDYGPQVGMVTPYGQTFQIGHVPIGMFDAMGGYYDGGGNGGSSSG 234
             + + +      YG   GM   Y Q  Q  H    M+ A GG  D G  GG++SG
Sbjct: 135 EHQRDAVGDGGGFYGGGGGM--QYHQHHQFLHQQNHMYGATGGGSDSG--GGAASG 186

[Close]

BLAST of CmoCh06G006830 vs. ExPASy Swiss-Prot
Match: Q60EQ4 (Nuclear transcription factor Y subunit B-3 OS=Oryza sativa subsp. japonica OX=39947 GN=NFYB3 PE=1 SV=2)

HSP 1 Score: 142.5 bits (358), Expect = 6.1e-33
Identity = 62/100 (62.00%), Postives = 84/100 (84.00%), Query Frame = 0


Query: 82  VREQDQYMPIANVIRIMRRILPSHAKISDDAKETIQECVSEYISFITGEANERCQREQRK 141
           VREQD+++PIAN+ RIM++ +P++ KI+ DAKET+QECVSE+ISFIT EA+++CQRE+RK
Sbjct: 36  VREQDRFLPIANISRIMKKAIPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRK 95

Query: 142 TVTAEDVLWAMGKLGFDDYIEPLTVFLNRYRESESDRMRT 182
           T+  +D+LWAM  LGF+DYIEPL V+L +YRE E D   T
Sbjct: 96  TINGDDLLWAMATLGFEDYIEPLKVYLQKYREMEGDSKLT 135

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BLAST of CmoCh06G006830 vs. ExPASy TrEMBL
Match: A0A6J1FYN7 (nuclear transcription factor Y subunit B-9-like OS=Cucurbita moschata OX=3662 GN=LOC111448893 PE=3 SV=1)

HSP 1 Score: 468.8 bits (1205), Expect = 1.4e-128
Identity = 238/238 (100.00%), Postives = 238/238 (100.00%), Query Frame = 0


Query: 1   MECGGAAGGRDGFHSYRRQQPKPTSALNVLLTTNKSSSANNTHNSNHQQSNSRNVAANSP 60
           MECGGAAGGRDGFHSYRRQQPKPTSALNVLLTTNKSSSANNTHNSNHQQSNSRNVAANSP
Sbjct: 1   MECGGAAGGRDGFHSYRRQQPKPTSALNVLLTTNKSSSANNTHNSNHQQSNSRNVAANSP 60

Query: 61  VTGSIPASIAATNNEQSQQCIVREQDQYMPIANVIRIMRRILPSHAKISDDAKETIQECV 120
           VTGSIPASIAATNNEQSQQCIVREQDQYMPIANVIRIMRRILPSHAKISDDAKETIQECV
Sbjct: 61  VTGSIPASIAATNNEQSQQCIVREQDQYMPIANVIRIMRRILPSHAKISDDAKETIQECV 120

Query: 121 SEYISFITGEANERCQREQRKTVTAEDVLWAMGKLGFDDYIEPLTVFLNRYRESESDRMR 180
           SEYISFITGEANERCQREQRKTVTAEDVLWAMGKLGFDDYIEPLTVFLNRYRESESDRMR
Sbjct: 121 SEYISFITGEANERCQREQRKTVTAEDVLWAMGKLGFDDYIEPLTVFLNRYRESESDRMR 180

Query: 181 TEPILRRNVDYGPQVGMVTPYGQTFQIGHVPIGMFDAMGGYYDGGGNGGSSSGNGSQL 239
           TEPILRRNVDYGPQVGMVTPYGQTFQIGHVPIGMFDAMGGYYDGGGNGGSSSGNGSQL
Sbjct: 181 TEPILRRNVDYGPQVGMVTPYGQTFQIGHVPIGMFDAMGGYYDGGGNGGSSSGNGSQL 238

[Close]

BLAST of CmoCh06G006830 vs. ExPASy TrEMBL
Match: A0A6J1KTC3 (nuclear transcription factor Y subunit B-3-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111498480 PE=3 SV=1)

HSP 1 Score: 423.3 bits (1087), Expect = 6.6e-115
Identity = 218/238 (91.60%), Postives = 224/238 (94.12%), Query Frame = 0


Query: 1   MECGGAAGGRDGFHSYRRQQPKPTSALNVLLTTNKSSSANNTHNSNHQQSNSRNVAANSP 60
           MECGG+AGG DGFHSY+RQQPKPTSALNVLLTTNKSS ANN    NHQQSN RN+AANS 
Sbjct: 1   MECGGSAGGGDGFHSYKRQQPKPTSALNVLLTTNKSSFANN----NHQQSNGRNIAANSL 60

Query: 61  VTGSIPASIAATNNEQSQQCIVREQDQYMPIANVIRIMRRILPSHAKISDDAKETIQECV 120
           +TGS  ASIAATNN +SQQCIVREQDQYMPIANVIRIMRRILPSHAKISDDAKETIQECV
Sbjct: 61  MTGSTCASIAATNNGKSQQCIVREQDQYMPIANVIRIMRRILPSHAKISDDAKETIQECV 120

Query: 121 SEYISFITGEANERCQREQRKTVTAEDVLWAMGKLGFDDYIEPLTVFLNRYRESESDRMR 180
           SEYISFITGEANERCQREQRKTVTAEDVLWAMGKLGFDDYIEPLTVFLNRYRE ESDR+R
Sbjct: 121 SEYISFITGEANERCQREQRKTVTAEDVLWAMGKLGFDDYIEPLTVFLNRYRELESDRIR 180

Query: 181 TEPILRRNVDYGPQVGMVTPYGQTFQIGHVPIGMFDAMGGYYDGGGNGGSSSGNGSQL 239
           TEPILRRNVDYGPQVGMV PYGQTFQIGHVP GMFDAMGGYYDGGGNGGSSSGNGSQL
Sbjct: 181 TEPILRRNVDYGPQVGMVPPYGQTFQIGHVPTGMFDAMGGYYDGGGNGGSSSGNGSQL 234

[Close]

BLAST of CmoCh06G006830 vs. ExPASy TrEMBL
Match: A0A6J1KV71 (nuclear transcription factor Y subunit B-9-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111498480 PE=3 SV=1)

HSP 1 Score: 412.9 bits (1060), Expect = 9.0e-112
Identity = 217/251 (86.45%), Postives = 224/251 (89.24%), Query Frame = 0


Query: 1   MECGGAAGGRDGFHSYRRQQPKPTS-------------ALNVLLTTNKSSSANNTHNSNH 60
           MECGG+AGG DGFHSY+RQQPKPTS             +LNVLLTTNKSS ANN    NH
Sbjct: 1   MECGGSAGGGDGFHSYKRQQPKPTSGIFISKIPLLPFASLNVLLTTNKSSFANN----NH 60

Query: 61  QQSNSRNVAANSPVTGSIPASIAATNNEQSQQCIVREQDQYMPIANVIRIMRRILPSHAK 120
           QQSN RN+AANS +TGS  ASIAATNN +SQQCIVREQDQYMPIANVIRIMRRILPSHAK
Sbjct: 61  QQSNGRNIAANSLMTGSTCASIAATNNGKSQQCIVREQDQYMPIANVIRIMRRILPSHAK 120

Query: 121 ISDDAKETIQECVSEYISFITGEANERCQREQRKTVTAEDVLWAMGKLGFDDYIEPLTVF 180
           ISDDAKETIQECVSEYISFITGEANERCQREQRKTVTAEDVLWAMGKLGFDDYIEPLTVF
Sbjct: 121 ISDDAKETIQECVSEYISFITGEANERCQREQRKTVTAEDVLWAMGKLGFDDYIEPLTVF 180

Query: 181 LNRYRESESDRMRTEPILRRNVDYGPQVGMVTPYGQTFQIGHVPIGMFDAMGGYYDGGGN 239
           LNRYRE ESDR+RTEPILRRNVDYGPQVGMV PYGQTFQIGHVP GMFDAMGGYYDGGGN
Sbjct: 181 LNRYRELESDRIRTEPILRRNVDYGPQVGMVPPYGQTFQIGHVPTGMFDAMGGYYDGGGN 240

[Close]

BLAST of CmoCh06G006830 vs. ExPASy TrEMBL
Match: A0A6J1GJB5 (nuclear transcription factor Y subunit B-9-like OS=Cucurbita moschata OX=3662 GN=LOC111454760 PE=3 SV=1)

HSP 1 Score: 361.7 bits (927), Expect = 2.4e-96
Identity = 189/214 (88.32%), Postives = 197/214 (92.06%), Query Frame = 0


Query: 25  SALNVLLTTNKSSSANNTHNSNHQQSNSRNVAANSPVTGSIPASIAATNNEQSQQCIVRE 84
           SALNVLLTTNKSS A    NSNHQQSNSRNVAA SPVTGS PASIAATNNEQSQQCIVRE
Sbjct: 8   SALNVLLTTNKSSPA----NSNHQQSNSRNVAAKSPVTGSTPASIAATNNEQSQQCIVRE 67

Query: 85  QDQYMPIANVIRIMRRILPSHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTVT 144
           QDQYMPIAN+IRIMRRILPSHAKISDDAKE IQECVSEYISFIT EANE+CQREQRKTVT
Sbjct: 68  QDQYMPIANMIRIMRRILPSHAKISDDAKEIIQECVSEYISFITSEANEQCQREQRKTVT 127

Query: 145 AEDVLWAMGKLGFDDYIEPLTVFLNRYRESESDRMRTEPILRRNVDYGPQVGMVTPYGQT 204
           AEDVLWAMGKLGFD+YI+PL VFLN YRE ESDR+RTEPI+RRNVDYGP VGM++PYGQT
Sbjct: 128 AEDVLWAMGKLGFDNYIKPLIVFLNCYRELESDRIRTEPIMRRNVDYGPHVGMISPYGQT 187

Query: 205 FQIGHVPIGMFDAMGGYYDGGGNGGSSSGNGSQL 239
           FQIGHVP  MFDAMG YYDGGGNGGSSSGN SQL
Sbjct: 188 FQIGHVPTEMFDAMGRYYDGGGNGGSSSGNDSQL 217

[Close]

BLAST of CmoCh06G006830 vs. ExPASy TrEMBL
Match: A0A1S3BKV5 (nuclear transcription factor Y subunit B-9 OS=Cucumis melo OX=3656 GN=LOC103491142 PE=3 SV=1)

HSP 1 Score: 343.2 bits (879), Expect = 8.7e-91
Identity = 172/210 (81.90%), Postives = 185/210 (88.10%), Query Frame = 0


Query: 29  VLLTTNKSSSANNTHNSNHQQSNSRNVAANSPVTGSIPASIAATNNEQSQQCIVREQDQY 88
           +++T NK++S NNT NSNH  SN      NS  T  +  +  A NNEQ+QQC+VREQDQY
Sbjct: 1   MMVTPNKATSINNTPNSNHHLSNGGTATGNSSATSPLSVAATANNNEQNQQCVVREQDQY 60

Query: 89  MPIANVIRIMRRILPSHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTVTAEDV 148
           MPIANVIRIMRRILPSHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTVTAEDV
Sbjct: 61  MPIANVIRIMRRILPSHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTVTAEDV 120

Query: 149 LWAMGKLGFDDYIEPLTVFLNRYRESESDRMRTEPILRRNVDYGPQVGMVTPYGQTFQIG 208
           LWAMGKLGFDDYIEPLTVFLNRYRESESDR+RTEPILRRNVDYGPQVGM++PYGQ FQIG
Sbjct: 121 LWAMGKLGFDDYIEPLTVFLNRYRESESDRIRTEPILRRNVDYGPQVGMISPYGQAFQIG 180

Query: 209 HVPIGMFDAMGGYYDGGGNGGSSSGNGSQL 239
           HVP GMFDAMGGYY GGG GG S+GNGSQL
Sbjct: 181 HVPAGMFDAMGGYYGGGGGGGPSAGNGSQL 210

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BLAST of CmoCh06G006830 vs. TAIR 10
Match: AT1G21970.1 (Histone superfamily protein )

HSP 1 Score: 196.1 bits (497), Expect = 3.3e-50
Identity = 114/193 (59.07%), Postives = 132/193 (68.39%), Query Frame = 0


Query: 59  SPVTGSIPASIAATNN-----EQSQQCIVREQDQYMPIANVIRIMRRILPSHAKISDDAK 118
           +P+T S+  + A   N     +Q   C+ REQDQYMPIANVIRIMR+ LPSHAKISDDAK
Sbjct: 29  TPMTSSVVVAGAGDKNNGIVVQQQPPCVAREQDQYMPIANVIRIMRKTLPSHAKISDDAK 88

Query: 119 ETIQECVSEYISFITGEANERCQREQRKTVTAEDVLWAMGKLGFDDYIEPLTVFLNRYRE 178
           ETIQECVSEYISF+TGEANERCQREQRKT+TAED+LWAM KLGFD+Y++PLTVF+NRYRE
Sbjct: 89  ETIQECVSEYISFVTGEANERCQREQRKTITAEDILWAMSKLGFDNYVDPLTVFINRYRE 148

Query: 179 SESDR---MRTEPILRRNVDYGPQVGMVTPYGQTFQIGHVPIGMFD---AMGG--YYDGG 237
            E+DR   +R EP   R    G  +G   P       G    GM D    MGG  YY  G
Sbjct: 149 IETDRGSALRGEPPSLRQTYGGNGIGFHGPSHGLPPPGPYGYGMLDQSMVMGGGRYYQNG 208

[Close]

BLAST of CmoCh06G006830 vs. TAIR 10
Match: AT5G47670.2 (nuclear factor Y, subunit B6 )

HSP 1 Score: 187.2 bits (474), Expect = 1.5e-47
Identity = 88/107 (82.24%), Postives = 100/107 (93.46%), Query Frame = 0


Query: 72  TNNEQSQQCIVREQDQYMPIANVIRIMRRILPSHAKISDDAKETIQECVSEYISFITGEA 131
           T+N   ++C VREQD++MPIANVIRIMRRILP+HAKISDD+KETIQECVSEYISFITGEA
Sbjct: 17  TSNGGEEECTVREQDRFMPIANVIRIMRRILPAHAKISDDSKETIQECVSEYISFITGEA 76

Query: 132 NERCQREQRKTVTAEDVLWAMGKLGFDDYIEPLTVFLNRYRESESDR 179
           NERCQREQRKT+TAEDVLWAM KLGFDDYIEPLT++L+RYRE E +R
Sbjct: 77  NERCQREQRKTITAEDVLWAMSKLGFDDYIEPLTLYLHRYRELEGER 123

[Close]

BLAST of CmoCh06G006830 vs. TAIR 10
Match: AT5G47670.1 (nuclear factor Y, subunit B6 )

HSP 1 Score: 183.7 bits (465), Expect = 1.7e-46
Identity = 99/169 (58.58%), Postives = 115/169 (68.05%), Query Frame = 0


Query: 10  RDGFHSYRRQQPKPTSALNVLLTTNKSSSANNTHNSNHQQSNSRNVAANSPVTGSIPASI 69
           R GFH YR+     T+     L  N   +  +       Q N                  
Sbjct: 3   RGGFHGYRKLSVNNTTPSPPGLAANFLMAEGSMRPPEFNQPNK----------------- 62

Query: 70  AATNNEQSQQCIVREQDQYMPIANVIRIMRRILPSHAKISDDAKETIQECVSEYISFITG 129
             T+N   ++C VREQD++MPIANVIRIMRRILP+HAKISDD+KETIQECVSEYISFITG
Sbjct: 63  --TSNGGEEECTVREQDRFMPIANVIRIMRRILPAHAKISDDSKETIQECVSEYISFITG 122

Query: 130 EANERCQREQRKTVTAEDVLWAMGKLGFDDYIEPLTVFLNRYRESESDR 179
           EANERCQREQRKT+TAEDVLWAM KLGFDDYIEPLT++L+RYRE E +R
Sbjct: 123 EANERCQREQRKTITAEDVLWAMSKLGFDDYIEPLTLYLHRYRELEGER 152

[Close]

BLAST of CmoCh06G006830 vs. TAIR 10
Match: AT4G14540.1 (nuclear factor Y, subunit B3 )

HSP 1 Score: 145.6 bits (366), Expect = 5.1e-35
Identity = 64/99 (64.65%), Postives = 86/99 (86.87%), Query Frame = 0


Query: 83  REQDQYMPIANVIRIMRRILPSHAKISDDAKETIQECVSEYISFITGEANERCQREQRKT 142
           REQD+++PIANV RIM++ LP++AKIS DAKET+QECVSE+ISFITGEA+++CQRE+RKT
Sbjct: 20  REQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKT 79

Query: 143 VTAEDVLWAMGKLGFDDYIEPLTVFLNRYRESESDRMRT 182
           +  +D+LWAM  LGF+DY+EPL V+L +YRE E ++  T
Sbjct: 80  INGDDLLWAMTTLGFEDYVEPLKVYLQKYREVEGEKTTT 118

[Close]

BLAST of CmoCh06G006830 vs. TAIR 10
Match: AT5G47640.1 (nuclear factor Y, subunit B2 )

HSP 1 Score: 145.2 bits (365), Expect = 6.7e-35
Identity = 83/176 (47.16%), Postives = 114/176 (64.77%), Query Frame = 0


Query: 73  NNEQSQQCI-VREQDQYMPIANVIRIMRRILPSHAKISDDAKETIQECVSEYISFITGEA 132
           NN+  Q  +  REQD+++PIANV RIM++ LP++AKIS DAKET+QECVSE+ISF+TGEA
Sbjct: 15  NNQNGQSSLSPREQDRFLPIANVSRIMKKALPANAKISKDAKETMQECVSEFISFVTGEA 74

Query: 133 NERCQREQRKTVTAEDVLWAMGKLGFDDYIEPLTVFLNRYRESESDRM------------ 192
           +++CQ+E+RKT+  +D+LWAM  LGF+DY+EPL V+L R+RE E +R             
Sbjct: 75  SDKCQKEKRKTINGDDLLWAMTTLGFEDYVEPLKVYLQRFREIEGERTGLGRPQTGGEVG 134

Query: 193 --RTEPILRRNVDYGPQVGMVTPYGQTFQIGHVPIGMFDAMGGYYDGGGNGGSSSG 234
             + + +      YG   GM   Y Q  Q  H    M+ A GG  D G  GG++SG
Sbjct: 135 EHQRDAVGDGGGFYGGGGGM--QYHQHHQFLHQQNHMYGATGGGSDSG--GGAASG 186

The following BLAST results are available for this feature:

BLAST of CmoCh06G006830 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SFD8	4.7e-49	59.07	Nuclear transcription factor Y subunit B-9 OS=Arabidopsis thaliana OX=3702 GN=NF...	[more]
Q84W66	2.4e-45	58.58	Nuclear transcription factor Y subunit B-6 OS=Arabidopsis thaliana OX=3702 GN=NF...	[more]
O23310	7.2e-34	64.65	Nuclear transcription factor Y subunit B-3 OS=Arabidopsis thaliana OX=3702 GN=NF...	[more]
Q9FGJ3	9.4e-34	47.16	Nuclear transcription factor Y subunit B-2 OS=Arabidopsis thaliana OX=3702 GN=NF...	[more]
Q60EQ4	6.1e-33	62.00	Nuclear transcription factor Y subunit B-3 OS=Oryza sativa subsp. japonica OX=39...	[more]

BLAST of CmoCh06G006830 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FYN7	1.4e-128	100.00	nuclear transcription factor Y subunit B-9-like OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1KTC3	6.6e-115	91.60	nuclear transcription factor Y subunit B-3-like isoform X2 OS=Cucurbita maxima O...	[more]
A0A6J1KV71	9.0e-112	86.45	nuclear transcription factor Y subunit B-9-like isoform X1 OS=Cucurbita maxima O...	[more]
A0A6J1GJB5	2.4e-96	88.32	nuclear transcription factor Y subunit B-9-like OS=Cucurbita moschata OX=3662 GN...	[more]
A0A1S3BKV5	8.7e-91	81.90	nuclear transcription factor Y subunit B-9 OS=Cucumis melo OX=3656 GN=LOC1034911...	[more]

BLAST of CmoCh06G006830 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G21970.1	3.3e-50	59.07	Histone superfamily protein	[more]
AT5G47670.2	1.5e-47	82.24	nuclear factor Y, subunit B6	[more]
AT5G47670.1	1.7e-46	58.58	nuclear factor Y, subunit B6	[more]
AT4G14540.1	5.1e-35	64.65	nuclear factor Y, subunit B3	[more]
AT5G47640.1	6.7e-35	47.16	nuclear factor Y, subunit B2	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PRINTS	PR00615	CCAATSUBUNTA	coord: 116..134 score: 43.9 coord: 135..153 score: 32.06 coord: 154..172 score: 31.46
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..24
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 36..63
None	No IPR available	PANTHER	PTHR11064:SF115	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-9	coord: 56..216
IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain	PFAM	PF00808	CBFD_NFYB_HMF	coord: 89..152 e-value: 3.0E-25 score: 88.3
IPR009072	Histone-fold	GENE3D	1.10.20.10	Histone, subunit A	coord: 74..189 e-value: 7.9E-41 score: 141.1
IPR009072	Histone-fold	SUPERFAMILY	47113	Histone-fold	coord: 85..178
IPR027113	Transcription factor NFYB/HAP3	PANTHER	PTHR11064	CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED	coord: 56..216
IPR003956	Transcription factor, NFYB/HAP3, conserved site	PROSITE	PS00685	NFYB_HAP3	coord: 119..135

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh06G006830.1	CmoCh06G006830.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045944	positive regulation of transcription by RNA polymerase II
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0016602	CCAAT-binding factor complex
cellular_component	GO:0005634	nucleus
molecular_function	GO:0001228	DNA-binding transcription activator activity, RNA polymerase II-specific
molecular_function	GO:0046982	protein heterodimerization activity
molecular_function	GO:0043565	sequence-specific DNA binding