Cmc00g0001501.1 (mRNA) Melon (Charmono) v1.1

Overview


Name	Cmc00g0001501.1
Type	mRNA
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Unknown protein
Location	CMiso1.1chr00: 1593645 .. 1594338 (+)
Sequence length	694
RNA-Seq Expression	Cmc00g0001501.1
Synteny	Cmc00g0001501.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTCTCATGTCGATCCGAATGAATCATCCTTTCCACGGAGGTCAATCTTTGCCTGCTAGGCAAGAGGATAGCAAGTTACAAATTCTGTCGCGGTAGGACATTTCTTTCTATTACTATGAAATTCATAAATGAAGTAGTTAATGGTGGGCTTACCATTATCCTTTTTGCAATGACGAATCTTGTATGTGTTCCGAAGAAAAGTTGTTCATTTTTCGGGGTCTCGAAGGGGCGTGGAAAGAGATCAAAACTCTGGAATGGAAATGGAAAAGAGATCTCACTCCAGTTCCTTCGGAAATGGTCAGATCTTTGGCACAAGAAGAAGGGGTTGATCCATATCATCTTGACTGGGTTCTGATTTCTCTATTTTTTTCATAATACCGAGTTGGCTTCTTTTCCTACCCGTATCGAATAGAACATGCTGAGCCAAATCTTCTTCATGTAAAACCTGCTTTATTTAGATCGGGAAAATCGTACGGTTTTATGAAAGCGTGTGCTATGGCTCGAATCCGTAGTCAATCCTATTTACGATAGGAGCTGTTGACAATTGAATACAATTTTTCCCATTATTTTCATTTTCGTATCCGTAATAGTGCGAAAAGAAGGAAGGCCCAATTCCAAGTTCTTCAAGAATAGTGGCCTTGACTTTCTCGACCCTTTGCCTTAGGATTAGTCAGTTCTATTTCTCGATGGGGGCA

mRNA sequence

CTCTCATGTCGATCCGAATGAATCATCCTTTCCACGGAGGTCAATCTTTGCCTGCTAGGCAAGAGGATAGCAAGTTACAAATTCTGTCGCGGTAGGACATTTCTTTCTATTACTATGAAATTCATAAATGAAGTAGTTAATGGTGGGCTTACCATTATCCTTTTTGCAATGACGAATCTTGTATGTGTTCCGAAGAAAAGTTGTTCATTTTTCGGGGTCTCGAAGGGGCGTGGAAAGAGATCAAAACTCTGGAATGGAAATGGAAAAGAGATCTCACTCCAGTTCCTTCGGAAATGGTCAGATCTTTGGCACAAGAAGAAGGGGTTGATCCATATCATCTTGACTGGGTTCTGATTTCTCTATTTTTTTCATAATACCGAGTTGGCTTCTTTTCCTACCCGTATCGAATAGAACATGCTGAGCCAAATCTTCTTCATGTAAAACCTGCTTTATTTAGATCGGGAAAATCGTACGGTTTTATGAAAGCGTGTGCTATGGCTCGAATCCGTAGTCAATCCTATTTACGATAGGAGCTGTTGACAATTGAATACAATTTTTCCCATTATTTTCATTTTCGTATCCGTAATAGTGCGAAAAGAAGGAAGGCCCAATTCCAAGTTCTTCAAGAATAGTGGCCTTGACTTTCTCGACCCTTTGCCTTAGGATTAGTCAGTTCTATTTCTCGATGGGGGCA

Coding sequence (CDS)

ATGAAATTCATAAATGAAGTAGTTAATGGTGGGCTTACCATTATCCTTTTTGCAATGACGAATCTTGTATGTGTTCCGAAGAAAAGTTGTTCATTTTTCGGGGTCTCGAAGGGGCGTGGAAAGAGATCAAAACTCTGGAATGGAAATGGAAAAGAGATCTCACTCCAGTTCCTTCGGAAATGGTCAGATCTTTGGCACAAGAAGAAGGGGTTGATCCATATCATCTTGACTGGGTTCTGA

Protein sequence

MKFINEVVNGGLTIILFAMTNLVCVPKKSCSFFGVSKGRGKRSKLWNGNGKEISLQFLRKWSDLWHKKKGLIHIILTGF

Homology

[Close]

BLAST of Cmc00g0001501.1 vs. NCBI nr
Match: AAO18644.1 (hypothetical protein [Lactuca sativa] >AAY57522.1 unknown [Lactuca sativa] >PLY68380.1 hypothetical protein LSAT_7X380 [Lactuca sativa])

HSP 1 Score: 62.8 bits (151), Expect = 1.6e-06
Identity = 40/84 (47.62%), Postives = 50/84 (59.52%), Query Frame = 0


Query: 1  MKFINEVVNGGLTIILFAMTNLVCVPKK-SCSFFGVSKGRGKRSKL----WNGNGKEISL 60
          M FINEVVNGG+TIILF +TN VCVPKK +   F   KG  K  +     W  +G  +  
Sbjct: 1  MNFINEVVNGGVTIILFVVTNPVCVPKKRNLYIFRDLKGAWKHIRTLEWKWKRDGTPVPS 60

Query: 61 QFLRKWSDLWHKKKGLIHIILTGF 80
          + +R  +    +KKGLI IILT F
Sbjct: 61 EMVRSLA----QKKGLIRIILTWF 80

[Close]

BLAST of Cmc00g0001501.1 vs. NCBI nr
Match: PLY85626.1 (hypothetical protein LSAT_0X40381 [Lactuca sativa])

HSP 1 Score: 62.8 bits (151), Expect = 1.6e-06
Identity = 40/84 (47.62%), Postives = 50/84 (59.52%), Query Frame = 0


Query: 1  MKFINEVVNGGLTIILFAMTNLVCVPKK-SCSFFGVSKGRGKRSKL----WNGNGKEISL 60
          M FINEVVNGG+TIILF +TN VCVPKK +   F   KG  K  +     W  +G  +  
Sbjct: 1  MNFINEVVNGGVTIILFVVTNPVCVPKKRNLYIFRDLKGAWKHIRTLEWKWKRDGTPVPS 60

Query: 61 QFLRKWSDLWHKKKGLIHIILTGF 80
          + +R  +    +KKGLI IILT F
Sbjct: 61 EMVRSLA----QKKGLIRIILTWF 80

[Close]

BLAST of Cmc00g0001501.1 vs. NCBI nr
Match: KAF5753271.1 (hypothetical protein HanXRQr2_CPg0836761 [Helianthus annuus])

HSP 1 Score: 55.1 bits (131), Expect = 3.2e-04
Identity = 36/78 (46.15%), Postives = 46/78 (58.97%), Query Frame = 0


Query: 7  VVNGGLTIILFAMTNLVCVPKK-SCSFFGVSKGRGKRSKL----WNGNGKEISLQFLRKW 66
          VVNGG+TIILF +TN VCVPKK + S F   KG  K  +     W  +G  +  + +R  
Sbjct: 2  VVNGGVTIILFVVTNPVCVPKKRNLSIFRGLKGAWKHIRTLEWKWKRDGTPVPSEMVRSL 61

Query: 67 SDLWHKKKGLIHIILTGF 80
          +    +KKGLI IILT F
Sbjct: 62 A----QKKGLIRIILTWF 75

[Close]

BLAST of Cmc00g0001501.1 vs. NCBI nr
Match: NP_054551.1 (hypothetical protein NitaCp077 [Nicotiana tabacum] >NP_054567.1 hypothetical protein NitaCp093 [Nicotiana tabacum] >YP_004891659.1 unnamed protein product [Nicotiana undulata] >YP_004891678.1 unnamed protein product [Nicotiana undulata] >YP_358730.1 hypothetical protein NisyCp086 [Nicotiana sylvestris] >YP_358749.1 hypothetical protein NisyCp107 [Nicotiana sylvestris] >YP_398916.1 hypothetical protein NitoCp085 [Nicotiana tomentosiformis] >YP_398935.1 hypothetical protein NitoCp106 [Nicotiana tomentosiformis] >AEO95726.1 hypothetical protein [synthetic construct] >AEO95617.1 hypothetical protein [Nicotiana undulata] >AEO95635.1 hypothetical protein [Nicotiana undulata] >AEO95743.1 hypothetical protein [synthetic construct] >CAA77391.1 hypothetical protein [Nicotiana tabacum])

HSP 1 Score: 54.7 bits (130), Expect = 4.2e-04
Identity = 30/43 (69.77%), Postives = 33/43 (76.74%), Query Frame = 0


Query: 1  MKFINEVVNGGLTIILFAMTNLVCVPKK-SCSFFGVSKGRGKR 43
          MKFINEVVNG +TIILF +TNLVCVPKK + S F   KG  KR
Sbjct: 1  MKFINEVVNGRVTIILFVVTNLVCVPKKRNLSIFRGLKGAWKR 43

[Close]

BLAST of Cmc00g0001501.1 vs. NCBI nr
Match: YP_001109551.1 (hypothetical protein Poptr_cp073 [Populus trichocarpa] >YP_001109568.1 hypothetical protein Poptr_cp090 [Populus trichocarpa] >APO09045.1 hypothetical protein [Populus nigra] >ABO36755.1 conserved hypothetical protein [Populus trichocarpa] >ABO36772.1 conserved hypothetical protein [Populus trichocarpa] >APO09062.1 hypothetical protein [Populus nigra])

HSP 1 Score: 53.5 bits (127), Expect = 9.5e-04
Identity = 29/42 (69.05%), Postives = 32/42 (76.19%), Query Frame = 0


Query: 1  MKFINEVVNGGLTIILFAMTNLVCVPKK-SCSFFGVSKGRGK 42
          MKFINEVVNGG+TIILF + NLVCVPKK + S F   KG  K
Sbjct: 1  MKFINEVVNGGVTIILFVVMNLVCVPKKRNLSIFRGLKGAWK 42

[Close]

BLAST of Cmc00g0001501.1 vs. ExPASy TrEMBL
Match: Q85XZ1 (Uncharacterized protein OS=Lactuca sativa OX=4236 GN=LSAT_7X380 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 7.5e-07
Identity = 40/84 (47.62%), Postives = 50/84 (59.52%), Query Frame = 0


Query: 1  MKFINEVVNGGLTIILFAMTNLVCVPKK-SCSFFGVSKGRGKRSKL----WNGNGKEISL 60
          M FINEVVNGG+TIILF +TN VCVPKK +   F   KG  K  +     W  +G  +  
Sbjct: 1  MNFINEVVNGGVTIILFVVTNPVCVPKKRNLYIFRDLKGAWKHIRTLEWKWKRDGTPVPS 60

Query: 61 QFLRKWSDLWHKKKGLIHIILTGF 80
          + +R  +    +KKGLI IILT F
Sbjct: 61 EMVRSLA----QKKGLIRIILTWF 80

[Close]

BLAST of Cmc00g0001501.1 vs. ExPASy TrEMBL
Match: A0A2J6LE72 (Uncharacterized protein OS=Lactuca sativa OX=4236 GN=LSAT_0X40381 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 7.5e-07
Identity = 40/84 (47.62%), Postives = 50/84 (59.52%), Query Frame = 0


Query: 1  MKFINEVVNGGLTIILFAMTNLVCVPKK-SCSFFGVSKGRGKRSKL----WNGNGKEISL 60
          M FINEVVNGG+TIILF +TN VCVPKK +   F   KG  K  +     W  +G  +  
Sbjct: 1  MNFINEVVNGGVTIILFVVTNPVCVPKKRNLYIFRDLKGAWKHIRTLEWKWKRDGTPVPS 60

Query: 61 QFLRKWSDLWHKKKGLIHIILTGF 80
          + +R  +    +KKGLI IILT F
Sbjct: 61 EMVRSLA----QKKGLIRIILTWF 80

[Close]

BLAST of Cmc00g0001501.1 vs. ExPASy TrEMBL
Match: Q3C1P3 (Uncharacterized protein OS=Nicotiana sylvestris OX=4096 GN=NisyCp086 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 2.1e-04
Identity = 30/43 (69.77%), Postives = 33/43 (76.74%), Query Frame = 0


Query: 1  MKFINEVVNGGLTIILFAMTNLVCVPKK-SCSFFGVSKGRGKR 43
          MKFINEVVNG +TIILF +TNLVCVPKK + S F   KG  KR
Sbjct: 1  MKFINEVVNGRVTIILFVVTNLVCVPKKRNLSIFRGLKGAWKR 43

[Close]

BLAST of Cmc00g0001501.1 vs. ExPASy TrEMBL
Match: Q37073 (Uncharacterized protein OS=Nicotiana tabacum OX=4097 GN=NitaCp077 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 2.1e-04
Identity = 30/43 (69.77%), Postives = 33/43 (76.74%), Query Frame = 0


Query: 1  MKFINEVVNGGLTIILFAMTNLVCVPKK-SCSFFGVSKGRGKR 43
          MKFINEVVNG +TIILF +TNLVCVPKK + S F   KG  KR
Sbjct: 1  MKFINEVVNGRVTIILFVVTNLVCVPKKRNLSIFRGLKGAWKR 43

[Close]

BLAST of Cmc00g0001501.1 vs. ExPASy TrEMBL
Match: Q33BX9 (Uncharacterized protein OS=Nicotiana tomentosiformis OX=4098 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 2.1e-04
Identity = 30/43 (69.77%), Postives = 33/43 (76.74%), Query Frame = 0


Query: 1  MKFINEVVNGGLTIILFAMTNLVCVPKK-SCSFFGVSKGRGKR 43
          MKFINEVVNG +TIILF +TNLVCVPKK + S F   KG  KR
Sbjct: 1  MKFINEVVNGRVTIILFVVTNLVCVPKKRNLSIFRGLKGAWKR 43

The following BLAST results are available for this feature:

BLAST of Cmc00g0001501.1 vs. NCBI nr


Match Name	E-value	Identity	Description
AAO18644.1	1.6e-06	47.62	hypothetical protein [Lactuca sativa] >AAY57522.1 unknown [Lactuca sativa] >PLY6...	[more]
PLY85626.1	1.6e-06	47.62	hypothetical protein LSAT_0X40381 [Lactuca sativa]	[more]
KAF5753271.1	3.2e-04	46.15	hypothetical protein HanXRQr2_CPg0836761 [Helianthus annuus]	[more]
NP_054551.1	4.2e-04	69.77	hypothetical protein NitaCp077 [Nicotiana tabacum] >NP_054567.1 hypothetical pro...	[more]
YP_001109551.1	9.5e-04	69.05	hypothetical protein Poptr_cp073 [Populus trichocarpa] >YP_001109568.1 hypotheti...	[more]

BLAST of Cmc00g0001501.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Cmc00g0001501.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
Q85XZ1	7.5e-07	47.62	Uncharacterized protein OS=Lactuca sativa OX=4236 GN=LSAT_7X380 PE=4 SV=1	[more]
A0A2J6LE72	7.5e-07	47.62	Uncharacterized protein OS=Lactuca sativa OX=4236 GN=LSAT_0X40381 PE=4 SV=1	[more]
Q3C1P3	2.1e-04	69.77	Uncharacterized protein OS=Nicotiana sylvestris OX=4096 GN=NisyCp086 PE=4 SV=1	[more]
Q37073	2.1e-04	69.77	Uncharacterized protein OS=Nicotiana tabacum OX=4097 GN=NitaCp077 PE=4 SV=1	[more]
Q33BX9	2.1e-04	69.77	Uncharacterized protein OS=Nicotiana tomentosiformis OX=4098 PE=4 SV=1	[more]

BLAST of Cmc00g0001501.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cmc00g0001501	Cmc00g0001501	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cmc00g0001501.1-exon	Cmc00g0001501.1-exon-CMiso1.1chr00:1593645..1594338	exon

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cmc00g0001501.1-five_prime_utr	Cmc00g0001501.1-five_prime_utr-CMiso1.1chr00:1593645..1593758	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cmc00g0001501.1-cds	Cmc00g0001501.1-cds-CMiso1.1chr00:1593759..1593998	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cmc00g0001501.1-three_prime_utr	Cmc00g0001501.1-three_prime_utr-CMiso1.1chr00:1593999..1594338	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cmc00g0001501.1	Cmc00g0001501.1-protein	polypeptide