CmaCh13G001290.1 (mRNA) Cucurbita maxima (Rimu) v1.1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.AAGAGTGGCGGGGTCGGAGGTGTCGCCTTGGGGCACGCAACAAAAAGGCCAAATCAACGGTGAACAGAAGAAAAATCCAAATTCAAGTACAAAATCACTCCCAACAAAATCAAACCATCTGGAGCGGCAAATTCCTTGTTCTGTAGCTTCAAGGATCCATTCAGCGCCATCCTCCACATTCAATCCCCTCGCTCTCACACAGTCTGTAGAACAACACCATGCCTCGCACCGGCTTCGTCGGTTCCTTATCCACGCCCAAGGTCGACGTCGTCATCGACATGGGCAATCCCTTCCTCAACCTCACCGTTGATGGCTTCTTGAAGATCGGATCCGTATGTCTCTCTTTTTTTTTTTTTTTTTCTTAATTTTTCTTTCTGTTCTTCGTTTGCTCCGTCTATAATCTAAATGCGTTCTGTTCTGTTGCTTCTTTCAAGGTCGCGGCTACCCGAGCGGCTGCCGAGGATGCGTATCATGTCGTTAGAAAAGGTTTTGGTTGATGCGTATCATGTCGTTAGAAATTGGTTTCCTCCTTTTTATGCAGTGATTTATGGCGTTGTTTTGTTTTTTCAGGAACGATTTCTAGTCACAATTTTGAAAACACGGTTAGTGTCTCTTGCTTCGTGTCTCAATTTGTGGAGTCTGGTTGTTTATGGCTTTTGATTGCTGAAATTTTCATTCTGAGAATGTTCATAAAGTGCGTAATTAGGAAACAGATAGATTCTTTATGGTCTTTTGATCTATTCGCCTAATACATCTTAGCTTCTATTGCAGTTGAAGAAAATGTGTAAAGAAGGTGCATACTGGGGTAAGTATAGATCGCATTACTCCTCAATGAAGTACTTAGCTTAGTGGATGAGTTTCAGCATCTGTAAACCTCAGCCAATTTGATAAGATTTTGCATTTGGTTCATTGTTCTTGGAAGTTAAGCTTATGAGATTATAAAATCTGGCTATAATTTCAGAAACAATGGTGATATTTCATTTGAAAAGATGGGTAAAGGATTTTTTTATGTTTGGACGCAGGAACCGTGGCCGGAGTTTACGTCGGTATGGAGTATGGGGTAGAAAGGATTCGCGGCAGAAGAGATTGGGTATGTTTTGCCATAAACTCAAAGTCATCTTTTAAATCAAGTTCAAGTAATTCTGTTAGATTTTGCTTCCAGTTCTCCGTGTTTATTTGGGAATATTTTCGAAGTTCTGTTTGATTTTCTGCCTCTCATCACTGTTCTGGATTGTTGGTTCACCTTGTAGAATGTATTGATCCTAGATTGGAGAAGAAAATGCAAACAACCCAGAAACAAAATTTCTCGAGATCCTAGATATATTATCAATGTTACTTACAATAGTCCTCTGATTAAAATGACTATATCTTTACAGCAAGAGAATCAATGTTTCTTTCTGGTTGTAGAACTGGGGTCTTAGTTGTCTGTATTATTTCAAACAAGAATTCCCCCTGTTACCAGATATTGTAATGCCCTAGAACACGAGTGACGTCATTGATGTTACATTGGGTCCTGAAAGGGGGTTGAATGTGAGAGAATGAAGCATTCTCTATAAGGGTGTGAAAACCTCTCCCTAGCAAACGCCTTTTAAAAACTTTGAGGGGAATCTCGAAGGGAAAGTCTAAAGAGGACAATATCGGCTAGCAGTAGTTTAGGCTTGAACTGTTACATGTAGTCTGCTATGGTTTCTAATTGGGCATATCACCAATAGGTTGTTTGTCTCGGGATCTAAATGTTTGAGCTTGTTTCAGAAAAATGCAATGATTGGAGGTGCTTTGACGGGGGCTATGGTATCGGCAGCAAGCAACAGCAACCGGGACAAAATCGTTATCGATGCAATTACAGGAGGGGCTGTTGCGACTGCAGCAGAGTTCATAAACTACCTTACTTGA AAGAGTGGCGGGGTCGGAGGTGTCGCCTTGGGGCACGCAACAAAAAGGCCAAATCAACGGTGAACAGAAGAAAAATCCAAATTCAAGTACAAAATCACTCCCAACAAAATCAAACCATCTGGAGCGGCAAATTCCTTGTTCTGTAGCTTCAAGGATCCATTCAGCGCCATCCTCCACATTCAATCCCCTCGCTCTCACACAGTCTGTAGAACAACACCATGCCTCGCACCGGCTTCGTCGGTTCCTTATCCACGCCCAAGGTCGACGTCGTCATCGACATGGGCAATCCCTTCCTCAACCTCACCGTTGATGGCTTCTTGAAGATCGGATCCGTCGCGGCTACCCGAGCGGCTGCCGAGGATGCGTATCATGTCGTTAGAAAAGGAACGATTTCTAGTCACAATTTTGAAAACACGTTGAAGAAAATGTGTAAAGAAGGTGCATACTGGGGAACCGTGGCCGGAGTTTACGTCGGTATGGAGTATGGGGTAGAAAGGATTCGCGGCAGAAGAGATTGGAAAAATGCAATGATTGGAGGTGCTTTGACGGGGGCTATGGTATCGGCAGCAAGCAACAGCAACCGGGACAAAATCGTTATCGATGCAATTACAGGAGGGGCTGTTGCGACTGCAGCAGAGTTCATAAACTACCTTACTTGA ATGCCTCGCACCGGCTTCGTCGGTTCCTTATCCACGCCCAAGGTCGACGTCGTCATCGACATGGGCAATCCCTTCCTCAACCTCACCGTTGATGGCTTCTTGAAGATCGGATCCGTCGCGGCTACCCGAGCGGCTGCCGAGGATGCGTATCATGTCGTTAGAAAAGGAACGATTTCTAGTCACAATTTTGAAAACACGTTGAAGAAAATGTGTAAAGAAGGTGCATACTGGGGAACCGTGGCCGGAGTTTACGTCGGTATGGAGTATGGGGTAGAAAGGATTCGCGGCAGAAGAGATTGGAAAAATGCAATGATTGGAGGTGCTTTGACGGGGGCTATGGTATCGGCAGCAAGCAACAGCAACCGGGACAAAATCGTTATCGATGCAATTACAGGAGGGGCTGTTGCGACTGCAGCAGAGTTCATAAACTACCTTACTTGA MPRTGFVGSLSTPKVDVVIDMGNPFLNLTVDGFLKIGSVAATRAAAEDAYHVVRKGTISSHNFENTLKKMCKEGAYWGTVAGVYVGMEYGVERIRGRRDWKNAMIGGALTGAMVSAASNSNRDKIVIDAITGGAVATAAEFINYLT Homology
BLAST of CmaCh13G001290.1 vs. ExPASy Swiss-Prot
Match: Q41050 (Outer envelope pore protein 16, chloroplastic OS=Pisum sativum OX=3888 GN=OEP16 PE=1 SV=1) HSP 1 Score: 248.4 bits (633), Expect = 4.9e-65 Identity = 116/146 (79.45%), Postives = 135/146 (92.47%), Query Frame = 0
BLAST of CmaCh13G001290.1 vs. ExPASy Swiss-Prot
Match: Q9ZV24 (Outer envelope pore protein 16-1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=OEP161 PE=1 SV=1) HSP 1 Score: 193.7 bits (491), Expect = 1.4e-48 Identity = 87/143 (60.84%), Postives = 110/143 (76.92%), Query Frame = 0
BLAST of CmaCh13G001290.1 vs. ExPASy Swiss-Prot
Match: Q0WMZ5 (Outer envelope pore protein 16-2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=OEP162 PE=2 SV=1) HSP 1 Score: 82.4 bits (202), Expect = 4.6e-15 Identity = 47/155 (30.32%), Postives = 77/155 (49.68%), Query Frame = 0
BLAST of CmaCh13G001290.1 vs. ExPASy Swiss-Prot
Match: Q9LZH8 (Outer envelope pore protein 16-4, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=OEP164 PE=2 SV=1) HSP 1 Score: 52.8 bits (125), Expect = 3.9e-06 Identity = 36/106 (33.96%), Postives = 56/106 (52.83%), Query Frame = 0
BLAST of CmaCh13G001290.1 vs. ExPASy Swiss-Prot
Match: O48528 (Outer envelope pore protein 16-3, chloroplastic/mitochondrial OS=Arabidopsis thaliana OX=3702 GN=OEP163 PE=1 SV=1) HSP 1 Score: 45.1 bits (105), Expect = 8.1e-04 Identity = 26/69 (37.68%), Postives = 36/69 (52.17%), Query Frame = 0
BLAST of CmaCh13G001290.1 vs. ExPASy TrEMBL
Match: A0A6J1HZI5 (outer envelope pore protein 16, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111469516 PE=4 SV=1) HSP 1 Score: 292.7 bits (748), Expect = 8.3e-76 Identity = 146/146 (100.00%), Postives = 146/146 (100.00%), Query Frame = 0
BLAST of CmaCh13G001290.1 vs. ExPASy TrEMBL
Match: A0A6J1HJY9 (outer envelope pore protein 16, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111464797 PE=4 SV=1) HSP 1 Score: 292.7 bits (748), Expect = 8.3e-76 Identity = 146/146 (100.00%), Postives = 146/146 (100.00%), Query Frame = 0
BLAST of CmaCh13G001290.1 vs. ExPASy TrEMBL
Match: A0A5D3BDN0 (Outer envelope pore protein 16 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold194G002350 PE=4 SV=1) HSP 1 Score: 280.4 bits (716), Expect = 4.3e-72 Identity = 137/146 (93.84%), Postives = 142/146 (97.26%), Query Frame = 0
BLAST of CmaCh13G001290.1 vs. ExPASy TrEMBL
Match: A0A1S3C572 (outer envelope pore protein 16, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103497163 PE=4 SV=1) HSP 1 Score: 280.4 bits (716), Expect = 4.3e-72 Identity = 137/146 (93.84%), Postives = 142/146 (97.26%), Query Frame = 0
BLAST of CmaCh13G001290.1 vs. ExPASy TrEMBL
Match: A0A5N6R1E6 (Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_009013 PE=4 SV=1) HSP 1 Score: 263.1 bits (671), Expect = 7.0e-67 Identity = 124/146 (84.93%), Postives = 140/146 (95.89%), Query Frame = 0
BLAST of CmaCh13G001290.1 vs. NCBI nr
Match: XP_022964801.1 (outer envelope pore protein 16, chloroplastic [Cucurbita moschata] >XP_022970582.1 outer envelope pore protein 16, chloroplastic [Cucurbita maxima] >XP_023519566.1 outer envelope pore protein 16, chloroplastic [Cucurbita pepo subsp. pepo] >KAG6583432.1 Outer envelope pore protein 16, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 292.7 bits (748), Expect = 1.7e-75 Identity = 146/146 (100.00%), Postives = 146/146 (100.00%), Query Frame = 0
BLAST of CmaCh13G001290.1 vs. NCBI nr
Match: XP_038893818.1 (outer envelope pore protein 16, chloroplastic [Benincasa hispida]) HSP 1 Score: 286.2 bits (731), Expect = 1.6e-73 Identity = 140/146 (95.89%), Postives = 145/146 (99.32%), Query Frame = 0
BLAST of CmaCh13G001290.1 vs. NCBI nr
Match: XP_008457483.1 (PREDICTED: outer envelope pore protein 16, chloroplastic [Cucumis melo] >TYJ97413.1 outer envelope pore protein 16 [Cucumis melo var. makuwa]) HSP 1 Score: 280.4 bits (716), Expect = 8.8e-72 Identity = 137/146 (93.84%), Postives = 142/146 (97.26%), Query Frame = 0
BLAST of CmaCh13G001290.1 vs. NCBI nr
Match: KAE8023298.1 (hypothetical protein FH972_009013 [Carpinus fangiana]) HSP 1 Score: 263.1 bits (671), Expect = 1.5e-66 Identity = 124/146 (84.93%), Postives = 140/146 (95.89%), Query Frame = 0
BLAST of CmaCh13G001290.1 vs. NCBI nr
Match: XP_011658142.1 (outer envelope pore protein 16, chloroplastic [Cucumis sativus] >KAE8653245.1 hypothetical protein Csa_019696 [Cucumis sativus]) HSP 1 Score: 262.7 bits (670), Expect = 1.9e-66 Identity = 130/146 (89.04%), Postives = 135/146 (92.47%), Query Frame = 0
BLAST of CmaCh13G001290.1 vs. TAIR 10
Match: AT2G28900.1 (outer plastid envelope protein 16-1 ) HSP 1 Score: 193.7 bits (491), Expect = 1.0e-49 Identity = 87/143 (60.84%), Postives = 110/143 (76.92%), Query Frame = 0
BLAST of CmaCh13G001290.1 vs. TAIR 10
Match: AT4G16160.1 (Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein ) HSP 1 Score: 84.3 bits (207), Expect = 8.6e-17 Identity = 49/153 (32.03%), Postives = 78/153 (50.98%), Query Frame = 0
BLAST of CmaCh13G001290.1 vs. TAIR 10
Match: AT4G16160.2 (Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein ) HSP 1 Score: 82.4 bits (202), Expect = 3.3e-16 Identity = 47/155 (30.32%), Postives = 77/155 (49.68%), Query Frame = 0
BLAST of CmaCh13G001290.1 vs. TAIR 10
Match: AT3G62880.1 (Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein ) HSP 1 Score: 52.8 bits (125), Expect = 2.8e-07 Identity = 36/106 (33.96%), Postives = 56/106 (52.83%), Query Frame = 0
BLAST of CmaCh13G001290.1 vs. TAIR 10
Match: AT3G62880.2 (Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein ) HSP 1 Score: 52.8 bits (125), Expect = 2.8e-07 Identity = 36/106 (33.96%), Postives = 56/106 (52.83%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
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