CmaCh11G000090.1 (mRNA) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh11G000090.1
TypemRNA
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionSAM domain-containing protein
LocationCma_Chr11: 49188 .. 50336 (+)
Sequence length978
RNA-Seq ExpressionCmaCh11G000090.1
SyntenyCmaCh11G000090.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAGATGTTCAACCCCCCGACGCCCAGATGAACGGCGGTCCTGCCCCTCTCGTCGTCTCCTCCGATACCGTTGGATCCAAACGCCAGCGAAGGCCTAGCGTCCGATTGGGGGATATCGGCGGCGACCAGCCCTACGATTCCCATGCTCGCCGCACGAATAAGCCTTGGAAGTTTGGTTTGGAAAATCGCAAGGACGCCGCTGTCTCTGCTAAGAACTCTAAAACTCGTCCCTTGACCAACTTGAGCTCGGCCGGGGAATTTCAGGAGACCGTAGATGGCGAAGACAAAGAGAACAATTTGGATAGTGTTGCAATTGGGAGCTGGAGGTTAAAGGATTCGAAGCGGAGAGCCTCCGCGGGCACCAAGAGGGTGAGGACTAATTGGGTATCCTCGAAGCACGACGAAGGCGGAGGAGGTGGGGAACGGGAAGGCGATGAAAAGTACAGCGGGGGGGAGGATGTGGATGAGGGGTATCGGGATTACGAGATTGAGAACTCGGAAAGTCCGTTGAAAGAGCAGAGCTCAATGCATTCGCTTGAGAATTTGGGGATAGAAGGTCAGGGGAACGAAAGGGAGATGCTTTATCAGGGGAATAGAAGATGTATCCGGTCTAGGGTTTCGGAGGGCAGGGAGCAGCAAGAAGGGCTGGAATTTTCAGGGCCTTCGGATACGGACGCGAGGAATTGGAAATGCGGGACTAGCGGTGATAGGAATGGGAATGGTGGGAGAGGAGTATGTGGGGAAGACGGGGTTAGAGTTTGGCTCAACGGCTTAGGGTTAGGTCGGTATGCTCCAGTTTTTGAAATTCACGAGGTGGACGATGAGGTTTTGCCAATGTTGACACTCGAGGATCTCAAGGATATGGGAATAACTGCAGTTGGGTCCCGGAGAAAAATGTACTGCGCAATCCAGAAGTTGGGGAAGGGATTTTCATAGAGTTTTGGTCTCAAATGTATCCCAAAACTGCAATGTATCTCAAACTTGTGTTTCTCTCACCCATTTTGCTACATTTTCTCGTATTGGACGCTGAAGCTTCTTTTGTTACTCTTTCATATTTCTGATTTTAGTGCTTACATCTTCTCCTCTACTGCAATTTTCCCCATAAATCTTTTTCCATTTGATTGTGATATCTATGTAGTGAAATAA

mRNA sequence

ATGGCAGATGTTCAACCCCCCGACGCCCAGATGAACGGCGGTCCTGCCCCTCTCGTCGTCTCCTCCGATACCGTTGGATCCAAACGCCAGCGAAGGCCTAGCGTCCGATTGGGGGATATCGGCGGCGACCAGCCCTACGATTCCCATGCTCGCCGCACGAATAAGCCTTGGAAGTTTGGTTTGGAAAATCGCAAGGACGCCGCTGTCTCTGCTAAGAACTCTAAAACTCGTCCCTTGACCAACTTGAGCTCGGCCGGGGAATTTCAGGAGACCGTAGATGGCGAAGACAAAGAGAACAATTTGGATAGTGTTGCAATTGGGAGCTGGAGGTTAAAGGATTCGAAGCGGAGAGCCTCCGCGGGCACCAAGAGGGTGAGGACTAATTGGGTATCCTCGAAGCACGACGAAGGCGGAGGAGGTGGGGAACGGGAAGGCGATGAAAAGTACAGCGGGGGGGAGGATGTGGATGAGGGGTATCGGGATTACGAGATTGAGAACTCGGAAAGTCCGTTGAAAGAGCAGAGCTCAATGCATTCGCTTGAGAATTTGGGGATAGAAGGTCAGGGGAACGAAAGGGAGATGCTTTATCAGGGGAATAGAAGATGTATCCGGTCTAGGGTTTCGGAGGGCAGGGAGCAGCAAGAAGGGCTGGAATTTTCAGGGCCTTCGGATACGGACGCGAGGAATTGGAAATGCGGGACTAGCGGTGATAGGAATGGGAATGGTGGGAGAGGAGTATGTGGGGAAGACGGGGTTAGAGTTTGGCTCAACGGCTTAGGGTTAGGTCGGTATGCTCCAGTTTTTGAAATTCACGAGGTGGACGATGAGGTTTTGCCAATGTTGACACTCGAGGATCTCAAGGATATGGGAATAACTGCAGTTGGGTCCCGGAGAAAAATTGCTTACATCTTCTCCTCTACTGCAATTTTCCCCATAAATCTTTTTCCATTTGATTGTGATATCTATGTAGTGAAATAA

Coding sequence (CDS)

ATGGCAGATGTTCAACCCCCCGACGCCCAGATGAACGGCGGTCCTGCCCCTCTCGTCGTCTCCTCCGATACCGTTGGATCCAAACGCCAGCGAAGGCCTAGCGTCCGATTGGGGGATATCGGCGGCGACCAGCCCTACGATTCCCATGCTCGCCGCACGAATAAGCCTTGGAAGTTTGGTTTGGAAAATCGCAAGGACGCCGCTGTCTCTGCTAAGAACTCTAAAACTCGTCCCTTGACCAACTTGAGCTCGGCCGGGGAATTTCAGGAGACCGTAGATGGCGAAGACAAAGAGAACAATTTGGATAGTGTTGCAATTGGGAGCTGGAGGTTAAAGGATTCGAAGCGGAGAGCCTCCGCGGGCACCAAGAGGGTGAGGACTAATTGGGTATCCTCGAAGCACGACGAAGGCGGAGGAGGTGGGGAACGGGAAGGCGATGAAAAGTACAGCGGGGGGGAGGATGTGGATGAGGGGTATCGGGATTACGAGATTGAGAACTCGGAAAGTCCGTTGAAAGAGCAGAGCTCAATGCATTCGCTTGAGAATTTGGGGATAGAAGGTCAGGGGAACGAAAGGGAGATGCTTTATCAGGGGAATAGAAGATGTATCCGGTCTAGGGTTTCGGAGGGCAGGGAGCAGCAAGAAGGGCTGGAATTTTCAGGGCCTTCGGATACGGACGCGAGGAATTGGAAATGCGGGACTAGCGGTGATAGGAATGGGAATGGTGGGAGAGGAGTATGTGGGGAAGACGGGGTTAGAGTTTGGCTCAACGGCTTAGGGTTAGGTCGGTATGCTCCAGTTTTTGAAATTCACGAGGTGGACGATGAGGTTTTGCCAATGTTGACACTCGAGGATCTCAAGGATATGGGAATAACTGCAGTTGGGTCCCGGAGAAAAATTGCTTACATCTTCTCCTCTACTGCAATTTTCCCCATAAATCTTTTTCCATTTGATTGTGATATCTATGTAGTGAAATAA

Protein sequence

MADVQPPDAQMNGGPAPLVVSSDTVGSKRQRRPSVRLGDIGGDQPYDSHARRTNKPWKFGLENRKDAAVSAKNSKTRPLTNLSSAGEFQETVDGEDKENNLDSVAIGSWRLKDSKRRASAGTKRVRTNWVSSKHDEGGGGGEREGDEKYSGGEDVDEGYRDYEIENSESPLKEQSSMHSLENLGIEGQGNEREMLYQGNRRCIRSRVSEGREQQEGLEFSGPSDTDARNWKCGTSGDRNGNGGRGVCGEDGVRVWLNGLGLGRYAPVFEIHEVDDEVLPMLTLEDLKDMGITAVGSRRKIAYIFSSTAIFPINLFPFDCDIYVVK
Homology
BLAST of CmaCh11G000090.1 vs. ExPASy Swiss-Prot
Match: Q9H694 (Protein bicaudal C homolog 1 OS=Homo sapiens OX=9606 GN=BICC1 PE=1 SV=2)

HSP 1 Score: 48.1 bits (113), Expect = 2.1e-04
Identity = 22/47 (46.81%), Postives = 31/47 (65.96%), Query Frame = 0

Query: 259 LGLGRYAPVFEIHEVDDEVLPMLTLEDLKDMGITAVGSRRKIAYIFS 306
           LGLG+Y  VF+  E+D +    LT +DLK++GIT  G+RRK+    S
Sbjct: 885 LGLGKYTDVFQQQEIDLQTFLTLTDQDLKELGITTFGARRKMLLAIS 931

BLAST of CmaCh11G000090.1 vs. ExPASy Swiss-Prot
Match: Q99MQ1 (Protein bicaudal C homolog 1 OS=Mus musculus OX=10090 GN=Bicc1 PE=1 SV=1)

HSP 1 Score: 48.1 bits (113), Expect = 2.1e-04
Identity = 22/47 (46.81%), Postives = 31/47 (65.96%), Query Frame = 0

Query: 259 LGLGRYAPVFEIHEVDDEVLPMLTLEDLKDMGITAVGSRRKIAYIFS 306
           LGLG+Y  VF+  E+D +    LT +DLK++GIT  G+RRK+    S
Sbjct: 887 LGLGKYTDVFQQQEIDLQTFLTLTDQDLKELGITTFGARRKMLLAIS 933

BLAST of CmaCh11G000090.1 vs. ExPASy Swiss-Prot
Match: Q9Y566 (SH3 and multiple ankyrin repeat domains protein 1 OS=Homo sapiens OX=9606 GN=SHANK1 PE=1 SV=2)

HSP 1 Score: 47.4 bits (111), Expect = 3.7e-04
Identity = 22/46 (47.83%), Postives = 26/46 (56.52%), Query Frame = 0

Query: 255  WLNGLGLGRYAPVFEIHEVDDEVLPMLTLEDLKDMGITAVGSRRKI 301
            WL  LGL  +   F  HE+D   LP LT ED  D+G+T VG R  I
Sbjct: 2106 WLEWLGLAEHRAQFLDHEIDGSHLPALTKEDYVDLGVTRVGHRMNI 2151

BLAST of CmaCh11G000090.1 vs. ExPASy Swiss-Prot
Match: D3YZU1 (SH3 and multiple ankyrin repeat domains protein 1 OS=Mus musculus OX=10090 GN=Shank1 PE=1 SV=1)

HSP 1 Score: 47.4 bits (111), Expect = 3.7e-04
Identity = 22/46 (47.83%), Postives = 26/46 (56.52%), Query Frame = 0

Query: 255  WLNGLGLGRYAPVFEIHEVDDEVLPMLTLEDLKDMGITAVGSRRKI 301
            WL  LGL  +   F  HE+D   LP LT ED  D+G+T VG R  I
Sbjct: 2112 WLEWLGLSEHRAQFLDHEIDGSHLPALTKEDYVDLGVTRVGHRMNI 2157

BLAST of CmaCh11G000090.1 vs. ExPASy Swiss-Prot
Match: Q9WV48 (SH3 and multiple ankyrin repeat domains protein 1 OS=Rattus norvegicus OX=10116 GN=Shank1 PE=1 SV=1)

HSP 1 Score: 47.4 bits (111), Expect = 3.7e-04
Identity = 22/46 (47.83%), Postives = 26/46 (56.52%), Query Frame = 0

Query: 255  WLNGLGLGRYAPVFEIHEVDDEVLPMLTLEDLKDMGITAVGSRRKI 301
            WL  LGL  +   F  HE+D   LP LT ED  D+G+T VG R  I
Sbjct: 2112 WLEWLGLSEHRAQFLDHEIDGSHLPALTKEDYVDLGVTRVGHRMNI 2157

BLAST of CmaCh11G000090.1 vs. TAIR 10
Match: AT3G48800.1 (Sterile alpha motif (SAM) domain-containing protein )

HSP 1 Score: 193.4 bits (490), Expect = 2.9e-49
Identity = 140/320 (43.75%), Postives = 182/320 (56.88%), Query Frame = 0

Query: 1   MADVQPPDAQM-NGGPAPLVVSSD-------TVGSKRQRRPSVRLGDIGGDQ-------- 60
           MA++QP D Q  NGG   +  S+          GSKR RRPSVRLG+IGGDQ        
Sbjct: 1   MAELQPVDGQQTNGGVVTIPASTSAEATAIAAAGSKRLRRPSVRLGEIGGDQYQQQHHHH 60

Query: 61  ----PYDSHARRTNKPWKFGLENRKDAAVSAKNSKTRPLTNLSSAGEFQETVDGEDKENN 120
                YDS  R++         NRKD   ++K+S+TR LTNLSS  E   T+D +++E N
Sbjct: 61  AAAAAYDSQGRKSKWTPTTTSGNRKD---TSKSSRTRTLTNLSSGYENIGTLD-DEREGN 120

Query: 121 LDSVAIGSWRLKDSKRRASAGTKRVRTNWVSSKHDEGGGGGEREGDEKYSGGEDVDEGYR 180
           +DS  +GSWR+K  +  +SA  KRVR+NWVS   D         GDEK SGGE+++ G+R
Sbjct: 121 VDSFGVGSWRVK-KRVGSSAAAKRVRSNWVSKVGD---------GDEKISGGEELEGGFR 180

Query: 181 DYEIENSESPLKEQSSMHSLENLGIEGQGNEREMLYQGNRRCIRSRVSEGREQQEGLEFS 240
           D+  E+SESP+KE       E+L  +G G      + G RR   +  S  RE +      
Sbjct: 181 DFSREDSESPIKE-------ESLDRDGGG------FYGRRRYESNNSSGNREFES----- 240

Query: 241 GPSDTDARNWKCGTSGDRNGNGGRGVCGEDGVRVWLNGLGLGRYAPVFEIHEVDDEVLPM 300
                             N +GG    G++GV++WL  LGLGRY P+FEIHEVD+EVLP+
Sbjct: 241 ------------------NMDGG----GKEGVKIWLQELGLGRYWPMFEIHEVDEEVLPL 266

BLAST of CmaCh11G000090.1 vs. TAIR 10
Match: AT5G23680.1 (Sterile alpha motif (SAM) domain-containing protein )

HSP 1 Score: 148.7 bits (374), Expect = 8.3e-36
Identity = 133/351 (37.89%), Postives = 180/351 (51.28%), Query Frame = 0

Query: 1   MADVQPPDA-QMNGG------------PAPLVVSSDTVGSKRQRRPSVRLGDIGGDQ--- 60
           MA++Q  +  Q+NGG            P     +  +VGSKR RRPSVRLGDIGGDQ   
Sbjct: 1   MAELQLVEGHQINGGFIPPAIINSIEAPETSAAAGVSVGSKRLRRPSVRLGDIGGDQYHQ 60

Query: 61  ----PYDSHARRTNKPWK------FGLENRKD----AAVSAKNSKTRPLTNLSSAG-EFQ 120
                YDS   R  K W+       G  NRK+    +  +  +S+TR +TNLSS G E  
Sbjct: 61  HVVAAYDSPQVRRPK-WRPSGGGGGGGGNRKEPNNQSGKTTSSSRTRTMTNLSSGGYENT 120

Query: 121 ETVDGEDKENNLDSVAIGSWRLKDSKRRA-----------SAGTKRVRTNWVSSKHDEGG 180
            T+D        D V+IGSWR+K   + +           +A  KRVR+NW ++++D   
Sbjct: 121 GTLDE-------DPVSIGSWRVKKWVKSSGGETAATTTTNTASAKRVRSNW-ATRND--- 180

Query: 181 GGGEREGDEKYSGGEDV---------DEGYRDYEIENSESPLKEQSSMHSLENLGIEGQG 240
             G  +GDEK+SG E+          +EG+RD+  E+SESP+KE+               
Sbjct: 181 --GVEQGDEKFSGEEEEEEEDEELGGEEGFRDFSREDSESPMKER--------------- 240

Query: 241 NEREMLYQGNRRCIRSRVSEGREQQEGLEFSGPSDTDARNWKCGTSGDRNGNGGRGVCGE 300
                           R  E RE    +E  G       +W+         +GGR   G+
Sbjct: 241 ----------------RRYENRE----VELLG-------DWQ---------SGGR---GK 283

BLAST of CmaCh11G000090.1 vs. TAIR 10
Match: AT2G45700.1 (sterile alpha motif (SAM) domain-containing protein )

HSP 1 Score: 49.7 bits (117), Expect = 5.2e-06
Identity = 24/51 (47.06%), Postives = 31/51 (60.78%), Query Frame = 0

Query: 255 WLNGLGLGRYAPVFEIHEVDDEVLPMLTLEDLKDMGITAVGSRRKIAYIFS 306
           WL  LGL +Y  VF   E+D + L  LT EDL  +GIT++G R+KI    S
Sbjct: 247 WLRSLGLAKYEDVFIREEIDWDTLQSLTEEDLLSIGITSLGPRKKIVNALS 297

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Q9H6942.1e-0446.81Protein bicaudal C homolog 1 OS=Homo sapiens OX=9606 GN=BICC1 PE=1 SV=2[more]
Q99MQ12.1e-0446.81Protein bicaudal C homolog 1 OS=Mus musculus OX=10090 GN=Bicc1 PE=1 SV=1[more]
Q9Y5663.7e-0447.83SH3 and multiple ankyrin repeat domains protein 1 OS=Homo sapiens OX=9606 GN=SHA... [more]
D3YZU13.7e-0447.83SH3 and multiple ankyrin repeat domains protein 1 OS=Mus musculus OX=10090 GN=Sh... [more]
Q9WV483.7e-0447.83SH3 and multiple ankyrin repeat domains protein 1 OS=Rattus norvegicus OX=10116 ... [more]
Match NameE-valueIdentityDescription
AT3G48800.12.9e-4943.75Sterile alpha motif (SAM) domain-containing protein [more]
AT5G23680.18.3e-3637.89Sterile alpha motif (SAM) domain-containing protein [more]
AT2G45700.15.2e-0647.06sterile alpha motif (SAM) domain-containing protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001660Sterile alpha motif domainSMARTSM00454SAM_4coord: 244..310
e-value: 3.5E-10
score: 49.8
IPR001660Sterile alpha motif domainPFAMPF00536SAM_1coord: 251..302
e-value: 1.7E-11
score: 44.4
IPR001660Sterile alpha motif domainPROSITEPS50105SAM_DOMAINcoord: 250..300
score: 13.466849
IPR013761Sterile alpha motif/pointed domain superfamilyGENE3D1.10.150.50coord: 246..302
e-value: 1.2E-16
score: 62.6
IPR013761Sterile alpha motif/pointed domain superfamilySUPERFAMILY47769SAM/Pointed domaincoord: 249..304
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..157
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 73..88
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 45..62
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 128..157
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 207..229
NoneNo IPR availablePANTHERPTHR10627SCP160coord: 17..300
NoneNo IPR availablePANTHERPTHR10627:SF75SUBFAMILY NOT NAMEDcoord: 17..300
NoneNo IPR availableCDDcd09487SAM_superfamilycoord: 252..300
e-value: 3.10706E-15
score: 67.2645

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CmaCh11G000090CmaCh11G000090gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmaCh11G000090.1:exon:1882CmaCh11G000090.1:exon:1882exon
CmaCh11G000090.1:exon:1881CmaCh11G000090.1:exon:1881exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmaCh11G000090.1:cdsCmaCh11G000090.1:cdsCDS
CmaCh11G000090.1:cdsCmaCh11G000090.1:cds_2CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CmaCh11G000090.1CmaCh11G000090.1-proteinpolypeptide


GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding