CmaCh11G000090 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh11G000090
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	SAM domain-containing protein
Location	Cma_Chr11: 49188 .. 50336 (+)
RNA-Seq Expression	CmaCh11G000090
Synteny	CmaCh11G000090

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGATGTTCAACCCCCCGACGCCCAGATGAACGGCGGTCCTGCCCCTCTCGTCGTCTCCTCCGATACCGTTGGATCCAAACGCCAGCGAAGGCCTAGCGTCCGATTGGGGGATATCGGCGGCGACCAGCCCTACGATTCCCATGCTCGCCGCACGAATAAGCCTTGGAAGTTTGGTTTGGAAAATCGCAAGGACGCCGCTGTCTCTGCTAAGAACTCTAAAACTCGTCCCTTGACCAACTTGAGCTCGGCCGGGGAATTTCAGGAGACCGTAGATGGCGAAGACAAAGAGAACAATTTGGATAGTGTTGCAATTGGGAGCTGGAGGTTAAAGGATTCGAAGCGGAGAGCCTCCGCGGGCACCAAGAGGGTGAGGACTAATTGGGTATCCTCGAAGCACGACGAAGGCGGAGGAGGTGGGGAACGGGAAGGCGATGAAAAGTACAGCGGGGGGGAGGATGTGGATGAGGGGTATCGGGATTACGAGATTGAGAACTCGGAAAGTCCGTTGAAAGAGCAGAGCTCAATGCATTCGCTTGAGAATTTGGGGATAGAAGGTCAGGGGAACGAAAGGGAGATGCTTTATCAGGGGAATAGAAGATGTATCCGGTCTAGGGTTTCGGAGGGCAGGGAGCAGCAAGAAGGGCTGGAATTTTCAGGGCCTTCGGATACGGACGCGAGGAATTGGAAATGCGGGACTAGCGGTGATAGGAATGGGAATGGTGGGAGAGGAGTATGTGGGGAAGACGGGGTTAGAGTTTGGCTCAACGGCTTAGGGTTAGGTCGGTATGCTCCAGTTTTTGAAATTCACGAGGTGGACGATGAGGTTTTGCCAATGTTGACACTCGAGGATCTCAAGGATATGGGAATAACTGCAGTTGGGTCCCGGAGAAAAATGTACTGCGCAATCCAGAAGTTGGGGAAGGGATTTTCATAGAGTTTTGGTCTCAAATGTATCCCAAAACTGCAATGTATCTCAAACTTGTGTTTCTCTCACCCATTTTGCTACATTTTCTCGTATTGGACGCTGAAGCTTCTTTTGTTACTCTTTCATATTTCTGATTTTAGTGCTTACATCTTCTCCTCTACTGCAATTTTCCCCATAAATCTTTTTCCATTTGATTGTGATATCTATGTAGTGAAATAA

mRNA sequence

ATGGCAGATGTTCAACCCCCCGACGCCCAGATGAACGGCGGTCCTGCCCCTCTCGTCGTCTCCTCCGATACCGTTGGATCCAAACGCCAGCGAAGGCCTAGCGTCCGATTGGGGGATATCGGCGGCGACCAGCCCTACGATTCCCATGCTCGCCGCACGAATAAGCCTTGGAAGTTTGGTTTGGAAAATCGCAAGGACGCCGCTGTCTCTGCTAAGAACTCTAAAACTCGTCCCTTGACCAACTTGAGCTCGGCCGGGGAATTTCAGGAGACCGTAGATGGCGAAGACAAAGAGAACAATTTGGATAGTGTTGCAATTGGGAGCTGGAGGTTAAAGGATTCGAAGCGGAGAGCCTCCGCGGGCACCAAGAGGGTGAGGACTAATTGGGTATCCTCGAAGCACGACGAAGGCGGAGGAGGTGGGGAACGGGAAGGCGATGAAAAGTACAGCGGGGGGGAGGATGTGGATGAGGGGTATCGGGATTACGAGATTGAGAACTCGGAAAGTCCGTTGAAAGAGCAGAGCTCAATGCATTCGCTTGAGAATTTGGGGATAGAAGGTCAGGGGAACGAAAGGGAGATGCTTTATCAGGGGAATAGAAGATGTATCCGGTCTAGGGTTTCGGAGGGCAGGGAGCAGCAAGAAGGGCTGGAATTTTCAGGGCCTTCGGATACGGACGCGAGGAATTGGAAATGCGGGACTAGCGGTGATAGGAATGGGAATGGTGGGAGAGGAGTATGTGGGGAAGACGGGGTTAGAGTTTGGCTCAACGGCTTAGGGTTAGGTCGGTATGCTCCAGTTTTTGAAATTCACGAGGTGGACGATGAGGTTTTGCCAATGTTGACACTCGAGGATCTCAAGGATATGGGAATAACTGCAGTTGGGTCCCGGAGAAAAATTGCTTACATCTTCTCCTCTACTGCAATTTTCCCCATAAATCTTTTTCCATTTGATTGTGATATCTATGTAGTGAAATAA

Coding sequence (CDS)

ATGGCAGATGTTCAACCCCCCGACGCCCAGATGAACGGCGGTCCTGCCCCTCTCGTCGTCTCCTCCGATACCGTTGGATCCAAACGCCAGCGAAGGCCTAGCGTCCGATTGGGGGATATCGGCGGCGACCAGCCCTACGATTCCCATGCTCGCCGCACGAATAAGCCTTGGAAGTTTGGTTTGGAAAATCGCAAGGACGCCGCTGTCTCTGCTAAGAACTCTAAAACTCGTCCCTTGACCAACTTGAGCTCGGCCGGGGAATTTCAGGAGACCGTAGATGGCGAAGACAAAGAGAACAATTTGGATAGTGTTGCAATTGGGAGCTGGAGGTTAAAGGATTCGAAGCGGAGAGCCTCCGCGGGCACCAAGAGGGTGAGGACTAATTGGGTATCCTCGAAGCACGACGAAGGCGGAGGAGGTGGGGAACGGGAAGGCGATGAAAAGTACAGCGGGGGGGAGGATGTGGATGAGGGGTATCGGGATTACGAGATTGAGAACTCGGAAAGTCCGTTGAAAGAGCAGAGCTCAATGCATTCGCTTGAGAATTTGGGGATAGAAGGTCAGGGGAACGAAAGGGAGATGCTTTATCAGGGGAATAGAAGATGTATCCGGTCTAGGGTTTCGGAGGGCAGGGAGCAGCAAGAAGGGCTGGAATTTTCAGGGCCTTCGGATACGGACGCGAGGAATTGGAAATGCGGGACTAGCGGTGATAGGAATGGGAATGGTGGGAGAGGAGTATGTGGGGAAGACGGGGTTAGAGTTTGGCTCAACGGCTTAGGGTTAGGTCGGTATGCTCCAGTTTTTGAAATTCACGAGGTGGACGATGAGGTTTTGCCAATGTTGACACTCGAGGATCTCAAGGATATGGGAATAACTGCAGTTGGGTCCCGGAGAAAAATTGCTTACATCTTCTCCTCTACTGCAATTTTCCCCATAAATCTTTTTCCATTTGATTGTGATATCTATGTAGTGAAATAA

Protein sequence

MADVQPPDAQMNGGPAPLVVSSDTVGSKRQRRPSVRLGDIGGDQPYDSHARRTNKPWKFGLENRKDAAVSAKNSKTRPLTNLSSAGEFQETVDGEDKENNLDSVAIGSWRLKDSKRRASAGTKRVRTNWVSSKHDEGGGGGEREGDEKYSGGEDVDEGYRDYEIENSESPLKEQSSMHSLENLGIEGQGNEREMLYQGNRRCIRSRVSEGREQQEGLEFSGPSDTDARNWKCGTSGDRNGNGGRGVCGEDGVRVWLNGLGLGRYAPVFEIHEVDDEVLPMLTLEDLKDMGITAVGSRRKIAYIFSSTAIFPINLFPFDCDIYVVK

Homology

[Close]

BLAST of CmaCh11G000090 vs. ExPASy Swiss-Prot
Match: Q9H694 (Protein bicaudal C homolog 1 OS=Homo sapiens OX=9606 GN=BICC1 PE=1 SV=2)

HSP 1 Score: 48.1 bits (113), Expect = 2.1e-04
Identity = 22/47 (46.81%), Postives = 31/47 (65.96%), Query Frame = 0


Query: 259 LGLGRYAPVFEIHEVDDEVLPMLTLEDLKDMGITAVGSRRKIAYIFS 306
           LGLG+Y  VF+  E+D +    LT +DLK++GIT  G+RRK+    S
Sbjct: 885 LGLGKYTDVFQQQEIDLQTFLTLTDQDLKELGITTFGARRKMLLAIS 931

[Close]

BLAST of CmaCh11G000090 vs. ExPASy Swiss-Prot
Match: Q99MQ1 (Protein bicaudal C homolog 1 OS=Mus musculus OX=10090 GN=Bicc1 PE=1 SV=1)

HSP 1 Score: 48.1 bits (113), Expect = 2.1e-04
Identity = 22/47 (46.81%), Postives = 31/47 (65.96%), Query Frame = 0


Query: 259 LGLGRYAPVFEIHEVDDEVLPMLTLEDLKDMGITAVGSRRKIAYIFS 306
           LGLG+Y  VF+  E+D +    LT +DLK++GIT  G+RRK+    S
Sbjct: 887 LGLGKYTDVFQQQEIDLQTFLTLTDQDLKELGITTFGARRKMLLAIS 933

[Close]

BLAST of CmaCh11G000090 vs. ExPASy Swiss-Prot
Match: Q9Y566 (SH3 and multiple ankyrin repeat domains protein 1 OS=Homo sapiens OX=9606 GN=SHANK1 PE=1 SV=2)

HSP 1 Score: 47.4 bits (111), Expect = 3.7e-04
Identity = 22/46 (47.83%), Postives = 26/46 (56.52%), Query Frame = 0


Query: 255  WLNGLGLGRYAPVFEIHEVDDEVLPMLTLEDLKDMGITAVGSRRKI 301
            WL  LGL  +   F  HE+D   LP LT ED  D+G+T VG R  I
Sbjct: 2106 WLEWLGLAEHRAQFLDHEIDGSHLPALTKEDYVDLGVTRVGHRMNI 2151

[Close]

BLAST of CmaCh11G000090 vs. ExPASy Swiss-Prot
Match: D3YZU1 (SH3 and multiple ankyrin repeat domains protein 1 OS=Mus musculus OX=10090 GN=Shank1 PE=1 SV=1)

HSP 1 Score: 47.4 bits (111), Expect = 3.7e-04
Identity = 22/46 (47.83%), Postives = 26/46 (56.52%), Query Frame = 0


Query: 255  WLNGLGLGRYAPVFEIHEVDDEVLPMLTLEDLKDMGITAVGSRRKI 301
            WL  LGL  +   F  HE+D   LP LT ED  D+G+T VG R  I
Sbjct: 2112 WLEWLGLSEHRAQFLDHEIDGSHLPALTKEDYVDLGVTRVGHRMNI 2157

[Close]

BLAST of CmaCh11G000090 vs. ExPASy Swiss-Prot
Match: Q9WV48 (SH3 and multiple ankyrin repeat domains protein 1 OS=Rattus norvegicus OX=10116 GN=Shank1 PE=1 SV=1)

HSP 1 Score: 47.4 bits (111), Expect = 3.7e-04
Identity = 22/46 (47.83%), Postives = 26/46 (56.52%), Query Frame = 0


Query: 255  WLNGLGLGRYAPVFEIHEVDDEVLPMLTLEDLKDMGITAVGSRRKI 301
            WL  LGL  +   F  HE+D   LP LT ED  D+G+T VG R  I
Sbjct: 2112 WLEWLGLSEHRAQFLDHEIDGSHLPALTKEDYVDLGVTRVGHRMNI 2157

[Close]

BLAST of CmaCh11G000090 vs. TAIR 10
Match: AT3G48800.1 (Sterile alpha motif (SAM) domain-containing protein )

HSP 1 Score: 193.4 bits (490), Expect = 2.9e-49
Identity = 140/320 (43.75%), Postives = 182/320 (56.88%), Query Frame = 0


Query: 1   MADVQPPDAQM-NGGPAPLVVSSD-------TVGSKRQRRPSVRLGDIGGDQ-------- 60
           MA++QP D Q  NGG   +  S+          GSKR RRPSVRLG+IGGDQ        
Sbjct: 1   MAELQPVDGQQTNGGVVTIPASTSAEATAIAAAGSKRLRRPSVRLGEIGGDQYQQQHHHH 60

Query: 61  ----PYDSHARRTNKPWKFGLENRKDAAVSAKNSKTRPLTNLSSAGEFQETVDGEDKENN 120
                YDS  R++         NRKD   ++K+S+TR LTNLSS  E   T+D +++E N
Sbjct: 61  AAAAAYDSQGRKSKWTPTTTSGNRKD---TSKSSRTRTLTNLSSGYENIGTLD-DEREGN 120

Query: 121 LDSVAIGSWRLKDSKRRASAGTKRVRTNWVSSKHDEGGGGGEREGDEKYSGGEDVDEGYR 180
           +DS  +GSWR+K  +  +SA  KRVR+NWVS   D         GDEK SGGE+++ G+R
Sbjct: 121 VDSFGVGSWRVK-KRVGSSAAAKRVRSNWVSKVGD---------GDEKISGGEELEGGFR 180

Query: 181 DYEIENSESPLKEQSSMHSLENLGIEGQGNEREMLYQGNRRCIRSRVSEGREQQEGLEFS 240
           D+  E+SESP+KE       E+L  +G G      + G RR   +  S  RE +      
Sbjct: 181 DFSREDSESPIKE-------ESLDRDGGG------FYGRRRYESNNSSGNREFES----- 240

Query: 241 GPSDTDARNWKCGTSGDRNGNGGRGVCGEDGVRVWLNGLGLGRYAPVFEIHEVDDEVLPM 300
                             N +GG    G++GV++WL  LGLGRY P+FEIHEVD+EVLP+
Sbjct: 241 ------------------NMDGG----GKEGVKIWLQELGLGRYWPMFEIHEVDEEVLPL 266

[Close]

BLAST of CmaCh11G000090 vs. TAIR 10
Match: AT5G23680.1 (Sterile alpha motif (SAM) domain-containing protein )

HSP 1 Score: 148.7 bits (374), Expect = 8.3e-36
Identity = 133/351 (37.89%), Postives = 180/351 (51.28%), Query Frame = 0


Query: 1   MADVQPPDA-QMNGG------------PAPLVVSSDTVGSKRQRRPSVRLGDIGGDQ--- 60
           MA++Q  +  Q+NGG            P     +  +VGSKR RRPSVRLGDIGGDQ   
Sbjct: 1   MAELQLVEGHQINGGFIPPAIINSIEAPETSAAAGVSVGSKRLRRPSVRLGDIGGDQYHQ 60

Query: 61  ----PYDSHARRTNKPWK------FGLENRKD----AAVSAKNSKTRPLTNLSSAG-EFQ 120
                YDS   R  K W+       G  NRK+    +  +  +S+TR +TNLSS G E  
Sbjct: 61  HVVAAYDSPQVRRPK-WRPSGGGGGGGGNRKEPNNQSGKTTSSSRTRTMTNLSSGGYENT 120

Query: 121 ETVDGEDKENNLDSVAIGSWRLKDSKRRA-----------SAGTKRVRTNWVSSKHDEGG 180
            T+D        D V+IGSWR+K   + +           +A  KRVR+NW ++++D   
Sbjct: 121 GTLDE-------DPVSIGSWRVKKWVKSSGGETAATTTTNTASAKRVRSNW-ATRND--- 180

Query: 181 GGGEREGDEKYSGGEDV---------DEGYRDYEIENSESPLKEQSSMHSLENLGIEGQG 240
             G  +GDEK+SG E+          +EG+RD+  E+SESP+KE+               
Sbjct: 181 --GVEQGDEKFSGEEEEEEEDEELGGEEGFRDFSREDSESPMKER--------------- 240

Query: 241 NEREMLYQGNRRCIRSRVSEGREQQEGLEFSGPSDTDARNWKCGTSGDRNGNGGRGVCGE 300
                           R  E RE    +E  G       +W+         +GGR   G+
Sbjct: 241 ----------------RRYENRE----VELLG-------DWQ---------SGGR---GK 283

[Close]

BLAST of CmaCh11G000090 vs. TAIR 10
Match: AT2G45700.1 (sterile alpha motif (SAM) domain-containing protein )

HSP 1 Score: 49.7 bits (117), Expect = 5.2e-06
Identity = 24/51 (47.06%), Postives = 31/51 (60.78%), Query Frame = 0


Query: 255 WLNGLGLGRYAPVFEIHEVDDEVLPMLTLEDLKDMGITAVGSRRKIAYIFS 306
           WL  LGL +Y  VF   E+D + L  LT EDL  +GIT++G R+KI    S
Sbjct: 247 WLRSLGLAKYEDVFIREEIDWDTLQSLTEEDLLSIGITSLGPRKKIVNALS 297

The following BLAST results are available for this feature:

BLAST of CmaCh11G000090 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9H694	2.1e-04	46.81	Protein bicaudal C homolog 1 OS=Homo sapiens OX=9606 GN=BICC1 PE=1 SV=2	[more]
Q99MQ1	2.1e-04	46.81	Protein bicaudal C homolog 1 OS=Mus musculus OX=10090 GN=Bicc1 PE=1 SV=1	[more]
Q9Y566	3.7e-04	47.83	SH3 and multiple ankyrin repeat domains protein 1 OS=Homo sapiens OX=9606 GN=SHA...	[more]
D3YZU1	3.7e-04	47.83	SH3 and multiple ankyrin repeat domains protein 1 OS=Mus musculus OX=10090 GN=Sh...	[more]
Q9WV48	3.7e-04	47.83	SH3 and multiple ankyrin repeat domains protein 1 OS=Rattus norvegicus OX=10116 ...	[more]

BLAST of CmaCh11G000090 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G48800.1	2.9e-49	43.75	Sterile alpha motif (SAM) domain-containing protein	[more]
AT5G23680.1	8.3e-36	37.89	Sterile alpha motif (SAM) domain-containing protein	[more]
AT2G45700.1	5.2e-06	47.06	sterile alpha motif (SAM) domain-containing protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001660	Sterile alpha motif domain	SMART	SM00454	SAM_4	coord: 244..310 e-value: 3.5E-10 score: 49.8
IPR001660	Sterile alpha motif domain	PFAM	PF00536	SAM_1	coord: 251..302 e-value: 1.7E-11 score: 44.4
IPR001660	Sterile alpha motif domain	PROSITE	PS50105	SAM_DOMAIN	coord: 250..300 score: 13.466849
IPR013761	Sterile alpha motif/pointed domain superfamily	GENE3D	1.10.150.50		coord: 246..302 e-value: 1.2E-16 score: 62.6
IPR013761	Sterile alpha motif/pointed domain superfamily	SUPERFAMILY	47769	SAM/Pointed domain	coord: 249..304
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..157
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 73..88
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 45..62
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 128..157
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 207..229
None	No IPR available	PANTHER	PTHR10627	SCP160	coord: 17..300
None	No IPR available	PANTHER	PTHR10627:SF75	SUBFAMILY NOT NAMED	coord: 17..300
None	No IPR available	CDD	cd09487	SAM_superfamily	coord: 252..300 e-value: 3.10706E-15 score: 67.2645

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh11G000090.1	CmaCh11G000090.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding