CmaCh06G016120.1 (mRNA) Cucurbita maxima (Rimu) v1.1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.AGGAACTCCTTCGACTCTCCCCAGCCTACAAGAGGTTTTAGATTGTAGTTTCTGATCCCCAAACGCTGCGACTGGTTCACCGACTCGCCGGAGAAGATGACGACGAAGATAGCGCCGGGAGTCGGAGCTAATCTGCTAGGCCAGCACGCCCCCGAGAGGAACCAAGACGCCACTGCCTATGTCGGCAATTTAGATCCCCAGGTCCTTTGTTCTCTTCCTCCCTGCTTTTTCAACTAATCCATCTTCAAATCCCCTCCTCTAGGGTTTCCATGTTCATTTAATTTAATTTTTTTTTTTTTTTTTTTTTTTTTTTGTGTGTGTTTCTTGTAGGTTTCTGAGGAGTTGCTTTGGGAGCTGTTTGTTCAAGCCGGCCCAGTTGGTGCGTTCTTTCGTTTCTCTCGTTTTGTGAAGTCTTTGGAATTTATGGAAACTCTGTTTGAGCTGTCTTTTTCCCTTCTTGGTTTGAGCACTTCCTTGAAAAAAATTGTGCCCACTTGTTATTTTGCAGTTAATGTGTACGTTCCGAAGGATAGAGTTACTAACTTGCATCAAGGATATGGATTCATTGAGTTTCGCAGTGAGGAAGATGCAGATTATGTAAGTAACGCTACGACTCTTTTTCTTTTCTATCCTCCTAATTATGTGTGTATTTTGATTTCCCATTCTTAATGCTTTTGCAGGCAATTAAGGTGCTGAATATGATTAAGCTCTACGGGAAGCCAATTCGAGTAAACAAGGTGTGTAGGGAATTTATTCTTTCAAGTGTGCTAGGATGCGTTTTGATATACTGCTCAGCAAAGGAAGATGGTATTTTGTATTCTTATGAAAATGGATATCTTACTGTTGTTATGTGTGCATTGCATATTTCCAGGCGTCTCAAGACAAGAAGAGTTTGGATGTGGGAGCAAATCTCTTCATAGGAAACCTCGACCCCGTGAGTAGTTATTTTATCATGTTTATATTTGGAAGACTTGCAAGCTAATGATTTAAAGAAGGTAACTAAACCTTGACGTTTGTTTCAGGATGTTGATGAAAAGCTCCTCTACGATACTTTCAGTGCTTTTGGGGTCATTGTGACAAATCCTAAGGTTATAACTTTTCCTATAAACCTCATCACTCATTTATGTTTTGTTTATCTTAGGAGATTAGGGCTCATTTTCAAGCAAACTAGTTACTTTCTAAGGAAGTAATCTTATTACAACTAAATGAAGTGAAGTTCTTTCATGGAAATACTAGACCTTTACATTGCCTTTTAGTATATTTCACATGTATATGATATCCTTGGATGTTTATCGCTTCTGGAGCGTGTTGAACATAGTTCGTCTCTAGCCTTTATTTTCTTTATGGGGCTGCTAAACCTTGGAAGTTTGTGGTTATTTTTGGCTTTTATTTATGGTTAAATCATAAATAGGAAAATTTGGGCCCTATGGTTAGGGAAAAAAAATTATAATTTAAACTCTATGGTCTTAAAAGTAAGAATTTAGTCGTTATGGTATGATAAGTCATAAATAGTTTCTATGGTTCGATAATACTCTCATAAATAAGGACTAAGATAACACTTAAATCCATGGGGACTTGATTCTAGCTTTCTTTAGAGACCAAATTTGTAATTTAACCTTTAATAATTTATTTCTTTGTGATTTTGTGATGATTATGAAGTGAATCCTGAAAATTCATTCCTACCAAATATTTTGGCTGTTTGGCCAAAAGATTTCTCTGGACTATAAAACTGGACTCTTGAATTTCTGATGTCCAATAAAAGGTCTAGGGAGTTCAAGATAAGGGGAAGGGAAGACAAGATCTTAGAAATCTTTTAGCCAAGTAGATAATGCATTTATACATGTCTAAAAGTTAAATTTGTAGAATTTATTTCATGGCCACTCCGCATAAGATTCTGTAGTTGCTTTTGTGAACTGTAGCATTGTATTTAGTAAATCCATTGTCTACCATTTCTTGCCCCCCCCCCAAAAAAAAAAAAAAAAAAAAAGAATGAAGAATTACAGTTTTAGTAGAATACCGTTATGGTGTTATTATTATATGGATCACTGTAATTTTCCAATTTCTCGTTCTTTTGTTTTATCTTTCTTTCTCAGTATAATGCTTCTTTGGTTGAAGTAAATTGACATGTCTCTCCTATTTTAAGCATAAGGGTGATTGGTAGCAGCCAGTTTATGGTTTGGTTTCTTTTCTCTTTAACAAGTGTCTTTCCTAATAAAACATCATTTTAAATGTTTTCTCTTCCATTATTATTTTATTTTCGTGTATTACTTGGATTTACTTTATATTTTCTAGGATTTTGTAACTGGTTTTTCTTCCATGTGGGCTAGTACATCTTACTAGTACTTACCAGTATTATCATGTTTGTGAAAATGGGACTAGTTTTATGTCCTGGCTTTCTATATAATATTATTATCTTGAAGTTCTTGTAGTTGGGTACGCCAGATTGGAAATTTGTTTGGGCTTTTAGGGGGTTAATAACATCATGGCTGTTGGGAGGCGTCTATATTTTGCTTACTGAACGTCTATCAGATCAGTTTCCTTCCATGCTTCAAGAGCAACGCAGAACTAGAGTTTTGTGTGCATAAGACACCTCGCTATTCCTTTATTTTTTAACTAAAGATCATTTCTTTTTGTATGCTCTATTTTTGATCTTTAGTTCTCTGTATCTTCTGTGTACTCGGCTCTTTTTGGGGATGTATCAGAACGGTTTAACATGAAAGTTCTGAGTTTTATGCACATTTGTGTTCTAACACTTCAAATGTCTTCGTGTTTCTAACCAGATTATGAGAGATCCAGATACGGGAAATTCACGTGGGTTTGGTTTTATTAGCTACGACTCTTTTGAAGCATCTGATGCAGCAATAGAGGTGTGTCTTTTCTTTTCTTATTGGTCGATCTCTACACGCATGTCATTCTATTTTGATACTATATGATGCTCATAATAAGCTTCCCTTAAATCATTGGAGCCTTCAGTGCCCCTAAATGTTAATGAAGTGAAAGAAGTGTTTTATTGCTACCTATCCTTTGTAATGCTCTCGAAAAATAAGGATCTATTTTTTCACGTCATCCAATTCATAAGGAAAACTCTGTCTCCAAATTTTGTTCAAGAAAGTTGTCCAAGTCTTTTAGCCCACTCAGTGAAGTACGTTTCCTTTTCAATTTCTGTCCCTTCACTTTTCTTCCCCCCGTTCATTGCATCCAAGTTGTTTTCTCCTCCTTGAATCAGATTCTTCATTAACCAGAGGAATGATCCATTCGACAAAAGACCCTACTTCTCCTTCTCATGAAAATGGTTTTGATGCTGAATCTGATGTTAGCTTGAGTAGTATGGGGTTGAATTTGCAACCTTTGAATAGCTACTTAAAAGATGATGTTTTTGAAGATTCTTATTAGAAAGATTTTGCTTCTTTATTTCAAGGTGATTAAAGATAATCCTCCTCCTCTCTTATTGAACTTTGTGGTTTCAAGATGTGCTAAAGTTCTCTATTGGTTAAACATGGAAACAGTGAAAAACATTGCCCCTCTAAGCTCTTAGGTCCTGTTTTCGTGGTTTTCTTTCCACTTTCCATGAATTTTGTTTTGTTTGCTATTCTTGTGGAAATTTCAGCTTCTTTATCAGTTGATTTCCTTCGTGGCTTCGGTTCAAGCTTTTATCTCCAGATGGTTTTGACTTTTGTTTTCTTGTTCTGTGGTTGCTGTCGTTAACAGGCAATGAATGGCCAGTATCTTTGTAATCGTCAAATAACGGTTTCTTATGCCTATAAGAAAGATACCAAGGGTGAACGACATGGCACACCTGCGGGTAAGAATTGTTTGCTGATCCATGAACTTTATGGAATTGTTTTAGGTTATGAACAGATTTGAAACTAGTGATCTGTGGAAGGATATTGTTGTCGTTGTTGTTGCTTATTTATCTCTGGTGTGGCTTTGTCTATTTTGTAGAGAGAGTATTGGCTGCTAGCAATCCCCAGAAGAGTAGACCTCACACTTTGTTTGCAAGTGGCCCTCCGACACTTCCAAAGGTTGCACAGCCTAACGGCACGATGGGAACTCTGATGCCACCACGCCCCTTCGCTAATGGTGGCATTACTCCCAGCCCAATTCCTGCTATACGTCCTCCACCACCGCAAGGGGTGGCTTTCCCCCCTATGCAGATGCCTGGACAACCACCAGCCTGGCAGGGTCAGCCGCAGCAACAAGGTCAAATTATGCCGGGTTCCATGATGCTACCCCCTGTTCAGCAATTTCGGCCACCTCCCCCAAACATGCCTCCGCCACCACCTCAGGCTCCTGGTCATTCCATGCCTATCCCTCCACCAATGGGAATGGGAGGAGGGCAGCCACCTCTTTGGCGACCACCACCACCGCCAATGCAGCAGCAGCAGCAGCAGCAGCCGGGAAGGCCCCATATGCAAATGTCGTCGATGCCCCCACCGCCACCTCCAAATCACATTCCACCACCTCATCCATCTTCTGGCTAAGACATTATTATACTACGCTAGCAATGAGAATGAAGTTTTTTCTGCCTGAACATCATGTTTAGTTATTTTTTATGATAATGCCCAGTAGGTTGTTATATTATCATTCAAATTGTAACACTTTCATCCGAGAAATTAGCAGGAAGCAATATGACATTTTTGCTACAAAATAGAGAATGTTCTCATCTTAGTTTGGGATACTTGTCAAGCTTCTAATGCACATTAGTAGAGTATCAATGAATATAGGCAAAGACCATGTAGGTGACCATCA AGGAACTCCTTCGACTCTCCCCAGCCTACAAGAGGTTTTAGATTGTAGTTTCTGATCCCCAAACGCTGCGACTGGTTCACCGACTCGCCGGAGAAGATGACGACGAAGATAGCGCCGGGAGTCGGAGCTAATCTGCTAGGCCAGCACGCCCCCGAGAGGAACCAAGACGCCACTGCCTATGTCGGCAATTTAGATCCCCAGGTTTCTGAGGAGTTGCTTTGGGAGCTGTTTGTTCAAGCCGGCCCAGTTGTTAATGTGTACGTTCCGAAGGATAGAGTTACTAACTTGCATCAAGGATATGGATTCATTGAGTTTCGCAGTGAGGAAGATGCAGATTATGCAATTAAGGTGCTGAATATGATTAAGCTCTACGGGAAGCCAATTCGAGTAAACAAGGCGTCTCAAGACAAGAAGAGTTTGGATGTGGGAGCAAATCTCTTCATAGGAAACCTCGACCCCGATGTTGATGAAAAGCTCCTCTACGATACTTTCAGTGCTTTTGGGGTCATTGTGACAAATCCTAAGATTATGAGAGATCCAGATACGGGAAATTCACGTGGGTTTGGTTTTATTAGCTACGACTCTTTTGAAGCATCTGATGCAGCAATAGAGGCAATGAATGGCCAGTATCTTTGTAATCGTCAAATAACGGTTTCTTATGCCTATAAGAAAGATACCAAGGGTGAACGACATGGCACACCTGCGGAGAGAGTATTGGCTGCTAGCAATCCCCAGAAGAGTAGACCTCACACTTTGTTTGCAAGTGGCCCTCCGACACTTCCAAAGGTTGCACAGCCTAACGGCACGATGGGAACTCTGATGCCACCACGCCCCTTCGCTAATGGTGGCATTACTCCCAGCCCAATTCCTGCTATACGTCCTCCACCACCGCAAGGGGTGGCTTTCCCCCCTATGCAGATGCCTGGACAACCACCAGCCTGGCAGGGTCAGCCGCAGCAACAAGGTCAAATTATGCCGGGTTCCATGATGCTACCCCCTGTTCAGCAATTTCGGCCACCTCCCCCAAACATGCCTCCGCCACCACCTCAGGCTCCTGGTCATTCCATGCCTATCCCTCCACCAATGGGAATGGGAGGAGGGCAGCCACCTCTTTGGCGACCACCACCACCGCCAATGCAGCAGCAGCAGCAGCAGCAGCCGGGAAGGCCCCATATGCAAATGTCGTCGATGCCCCCACCGCCACCTCCAAATCACATTCCACCACCTCATCCATCTTCTGGCTAAGACATTATTATACTACGCTAGCAATGAGAATGAAGTTTTTTCTGCCTGAACATCATGTTTAGTTATTTTTTATGATAATGCCCAGTAGGTTGTTATATTATCATTCAAATTGTAACACTTTCATCCGAGAAATTAGCAGGAAGCAATATGACATTTTTGCTACAAAATAGAGAATGTTCTCATCTTAGTTTGGGATACTTGTCAAGCTTCTAATGCACATTAGTAGAGTATCAATGAATATAGGCAAAGACCATGTAGGTGACCATCA ATGACGACGAAGATAGCGCCGGGAGTCGGAGCTAATCTGCTAGGCCAGCACGCCCCCGAGAGGAACCAAGACGCCACTGCCTATGTCGGCAATTTAGATCCCCAGGTTTCTGAGGAGTTGCTTTGGGAGCTGTTTGTTCAAGCCGGCCCAGTTGTTAATGTGTACGTTCCGAAGGATAGAGTTACTAACTTGCATCAAGGATATGGATTCATTGAGTTTCGCAGTGAGGAAGATGCAGATTATGCAATTAAGGTGCTGAATATGATTAAGCTCTACGGGAAGCCAATTCGAGTAAACAAGGCGTCTCAAGACAAGAAGAGTTTGGATGTGGGAGCAAATCTCTTCATAGGAAACCTCGACCCCGATGTTGATGAAAAGCTCCTCTACGATACTTTCAGTGCTTTTGGGGTCATTGTGACAAATCCTAAGATTATGAGAGATCCAGATACGGGAAATTCACGTGGGTTTGGTTTTATTAGCTACGACTCTTTTGAAGCATCTGATGCAGCAATAGAGGCAATGAATGGCCAGTATCTTTGTAATCGTCAAATAACGGTTTCTTATGCCTATAAGAAAGATACCAAGGGTGAACGACATGGCACACCTGCGGAGAGAGTATTGGCTGCTAGCAATCCCCAGAAGAGTAGACCTCACACTTTGTTTGCAAGTGGCCCTCCGACACTTCCAAAGGTTGCACAGCCTAACGGCACGATGGGAACTCTGATGCCACCACGCCCCTTCGCTAATGGTGGCATTACTCCCAGCCCAATTCCTGCTATACGTCCTCCACCACCGCAAGGGGTGGCTTTCCCCCCTATGCAGATGCCTGGACAACCACCAGCCTGGCAGGGTCAGCCGCAGCAACAAGGTCAAATTATGCCGGGTTCCATGATGCTACCCCCTGTTCAGCAATTTCGGCCACCTCCCCCAAACATGCCTCCGCCACCACCTCAGGCTCCTGGTCATTCCATGCCTATCCCTCCACCAATGGGAATGGGAGGAGGGCAGCCACCTCTTTGGCGACCACCACCACCGCCAATGCAGCAGCAGCAGCAGCAGCAGCCGGGAAGGCCCCATATGCAAATGTCGTCGATGCCCCCACCGCCACCTCCAAATCACATTCCACCACCTCATCCATCTTCTGGCTAA MTTKIAPGVGANLLGQHAPERNQDATAYVGNLDPQVSEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFIEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAASNPQKSRPHTLFASGPPTLPKVAQPNGTMGTLMPPRPFANGGITPSPIPAIRPPPPQGVAFPPMQMPGQPPAWQGQPQQQGQIMPGSMMLPPVQQFRPPPPNMPPPPPQAPGHSMPIPPPMGMGGGQPPLWRPPPPPMQQQQQQQPGRPHMQMSSMPPPPPPNHIPPPHPSSG Homology
BLAST of CmaCh06G016120.1 vs. ExPASy Swiss-Prot
Match: Q15427 (Splicing factor 3B subunit 4 OS=Homo sapiens OX=9606 GN=SF3B4 PE=1 SV=1) HSP 1 Score: 339.0 bits (868), Expect = 7.1e-92 Identity = 218/402 (54.23%), Postives = 253/402 (62.94%), Query Frame = 0
BLAST of CmaCh06G016120.1 vs. ExPASy Swiss-Prot
Match: Q8QZY9 (Splicing factor 3B subunit 4 OS=Mus musculus OX=10090 GN=Sf3b4 PE=1 SV=1) HSP 1 Score: 339.0 bits (868), Expect = 7.1e-92 Identity = 218/402 (54.23%), Postives = 253/402 (62.94%), Query Frame = 0
BLAST of CmaCh06G016120.1 vs. ExPASy Swiss-Prot
Match: Q6AYL5 (Splicing factor 3B subunit 4 OS=Rattus norvegicus OX=10116 GN=Sf3b4 PE=2 SV=1) HSP 1 Score: 339.0 bits (868), Expect = 7.1e-92 Identity = 218/402 (54.23%), Postives = 253/402 (62.94%), Query Frame = 0
BLAST of CmaCh06G016120.1 vs. ExPASy Swiss-Prot
Match: Q09442 (Splicing factor 3B subunit 4 OS=Caenorhabditis elegans OX=6239 GN=sap-49 PE=1 SV=2) HSP 1 Score: 325.9 bits (834), Expect = 6.3e-88 Identity = 212/385 (55.06%), Postives = 244/385 (63.38%), Query Frame = 0
BLAST of CmaCh06G016120.1 vs. ExPASy Swiss-Prot
Match: O14102 (Spliceosome-associated protein 49 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=sap49 PE=3 SV=2) HSP 1 Score: 243.0 bits (619), Expect = 5.3e-63 Identity = 151/326 (46.32%), Postives = 199/326 (61.04%), Query Frame = 0
BLAST of CmaCh06G016120.1 vs. TAIR 10
Match: AT2G18510.1 (RNA-binding (RRM/RBD/RNP motifs) family protein ) HSP 1 Score: 483.8 bits (1244), Expect = 1.3e-136 Identity = 280/382 (73.30%), Postives = 293/382 (76.70%), Query Frame = 0
BLAST of CmaCh06G016120.1 vs. TAIR 10
Match: AT4G34110.1 (poly(A) binding protein 2 ) HSP 1 Score: 131.7 bits (330), Expect = 1.2e-30 Identity = 73/164 (44.51%), Postives = 105/164 (64.02%), Query Frame = 0
BLAST of CmaCh06G016120.1 vs. TAIR 10
Match: AT1G49760.1 (poly(A) binding protein 8 ) HSP 1 Score: 131.3 bits (329), Expect = 1.6e-30 Identity = 71/175 (40.57%), Postives = 109/175 (62.29%), Query Frame = 0
BLAST of CmaCh06G016120.1 vs. TAIR 10
Match: AT1G49760.2 (poly(A) binding protein 8 ) HSP 1 Score: 131.3 bits (329), Expect = 1.6e-30 Identity = 71/175 (40.57%), Postives = 109/175 (62.29%), Query Frame = 0
BLAST of CmaCh06G016120.1 vs. TAIR 10
Match: AT1G22760.1 (poly(A) binding protein 3 ) HSP 1 Score: 123.6 bits (309), Expect = 3.4e-28 Identity = 65/189 (34.39%), Postives = 114/189 (60.32%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
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