CmaCh02G008720.1 (mRNA) Cucurbita maxima (Rimu) v1.1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGACGCCCTTGCACTCGATTCGGACCATGAATTTTCCTATAAACTTCAAATCGAAGAAGCTCTCGACGCATCACTCGCTTCCTCTGCCTCTTCCTTCACTCCTCTGCCAGAATTTCAAGAACTCGAAGGGAATGATATCACGACAATCGGTACGCTCTACTCCGGTGAACTCGGGGAATGCGATCAAATATTCCAAGAATGGCTGCAATCGGCGTTCGACACGCGCAGGACTCACGATTCCGGGGAGATTCTAAATATTCCCGATGGTGACTTGAGTGAGCGCGAATATAGTATTGGGAAATCCTTCGGGGAGGGATCCTCGAAGAGCGAGGAGAATCAGGGCGTTTCTAGCCTCTATTTCAAGGGTCTTGTAAGTGAGGAAGGGATTGGAATTGGTGTTTCGATTTGTAATCCAAAGAATGAATTAGTCTTCGAGGTTAAAAGACGTCTTGTAGGAAACGAAAGGTGAAAAATGGTGGCTGAATGTAAGGCTTTGATCGCAGGGCTGAACGCAGCTATTGATTTGGAATTGAAGCAACTTTGTTTTTACTGCGATTACTATTCGCTTTATCAATTTGTAAGCCTTCTCTATACTTTTGTTTGTCGTTTATTCTTGAACAAATTTGTTGCAGTTACTTGTTTATCATTAGCATCCGATATGATTTCGTGCTGTTTAAAACTTTAGCTGTAATCTACAAGTAGTGCGTCGATCAAGAGACGTTTATATGAACTATCACGTGGCATGAGGCCCTTACGTTTTACTTTCATAATAGTCTGGTTTCTTTCTGTTGAGCATTAAGTTTAGGGATCATAAACTCATTCTCCAGGGTTGAATTACGACTCTCCATAATGGTATGATATTGTCAACTTACTCTCATGGCTTTGTTTTGAGCTTTCTCAAAGGGTCTCATATCAATGGAAATGATATTTCTTACTTATAAACTCATGATCAGTTCTTTAAATTAGCTAATGTGAGAATCCCTCCCACCAATTCTCAACAATCCTCCCCTCGAACAATGTACACTATAGAGCCTCCTCTAGGGCCTATGGAATCCTCGAACAACCTCCCCTTAATCGAGACTCGAATCCTTCTTTGGTCCTCTAAGGCCTATGAAGCCCTTGAACAACCTCCATTTAATCGAGGCTCTCTTCGACATTTGAGGATTCTTTTGACATGGCTAAGTTAAGGGCATGACTTTGATACCATGTTAGGAATCACGACTCTCCATAATGGTATGATATTGTCCACTTTGAGCCTAAGCTCTCATGATTTTGCTTTGAGCTTCTCCAAAAGGCCTCACACCAATGGAGATGTATTCCTTGCTTATAAATCAACGATCATTCTCTAAATTAGTTAATGTAGGTCTCCCTCCCAACCATCCTCAAACCTGTTACCTGAAATGTGATTTAGAATTCCAAAAATGTTTGATGAATAGTTGAGCTCAGGGTTAAGCTTTTCACTAGCACTTTATGTCTAGAACTACAATAAAGAATCCAACCTCATATCATTATCCCATGTGCAGGTAACTGGTAGATGGCTGCCCAAGAAGCGCAAGGTTGCCGCTCTACTCAGACAGATAACTCATCTTCAAGCACGTTTCGACTCTTGCTATCCCAGGCTCGTGGCTCGACATGATATCAAATTTGCATTCAAACTAGCCAGAGAGGCAATAGTTCCTCAGATCACACAAACTGAAGATCCTGTCCCAATGAAGCTAAATGAGACTTGTGTTATTTGTTATGAGGATTGTGATGTTAATAGGATGTTTGCAGTTGATGGCTGCTTGCATCGGTACTGCTTTTCTTGTATGAAACAACACATGGAAGTGAAATTACTTCAAGGTTTGGTGCCAAAGTGTCCGCACAAGGGTTGTATGATCGACCTCAACGTTGATAGCTGCACAAAATTCTTGACACCTAAAGATATGGCTACCATGCGCCAACATCTTAAAGAGGCTTCCATACCAGTTTCTGAGAAAGTTTATTGCCCATATCCGAAATGCTCGGCTCTAACGACAAAAGGCGAGGCCTTGGAATACACTAGAGATGTTATTGGTAGTGCCAACCAATCTGGATTGAGGAAATGCATGAAGTGTCATGGTCTTTTCTGCATCAACTGCAAGGTTCCTTGGCATAATCTCGTTTCATGCAGTGACTATAAAGGGTCAAGTAATCTGGAATTAGAAGATGTGAAATTGAAGTCCCTGGCATCGACGTGCCTGTGGCGCCAATGTGTGAAATGTAATCACATGATTGAACTTGCTGAAGGTTGCTATCACATGACTTGCAGGTAATCTTATTATTCCCATCTTACTTGAAATTCTTGCTTGGCATGAAGTTTTGACAGATTAAGTACATTTTTCTGCACACCAACTTGAATTTGATTGAAGGATAGGAATCAAAATAGTAATATGAATGCCTACAATACCTGCAAGTTGTCTAAACCAAATCTAGTTTGCACTTGTTCATTTCTTCATCCAACTTTGAGTTGATCACAAAATCAACTCTTTGCTCATATTTTCATTGCAGATGCGGTCACCAGTTTTGCTATAAATGTGGAGTGGAATGGAAAGTTAAAAAGGCGACGTGTTCTTGCCCGCTCTGGGGTGAGGATTGTATCTGGAATAATGATAATAATAGGGAATTGGATCTTGATGGTATATACTTAGATGAAGAAGAAGAAGAAGAAGAAGAGTTTTATGATTCAGATGATGAACATTATTATATTTGA ATGGACGCCCTTGCACTCGATTCGGACCATGAATTTTCCTATAAACTTCAAATCGAAGAAGCTCTCGACGCATCACTCGCTTCCTCTGCCTCTTCCTTCACTCCTCTGCCAGAATTTCAAGAACTCGAAGGGAATGATATCACGACAATCGGTACGCTCTACTCCGGTGAACTCGGGGAATGCGATCAAATATTCCAAGAATGGCTGCAATCGGCGTTCGACACGCGCAGGACTCACGATTCCGGGGAGATTCTAAATATTCCCGATGGTGACTTGAGTGAGCGCGAATATAGTATTGGGAAATCCTTCGGGGAGGGATCCTCGAAGAGCGAGGAGAATCAGGGCGTTTCTAGCCTCTATTTCAAGGGTCTTGTAAGTGAGGAAGGGATTGGAATTGGGCTGAACGCAGCTATTGATTTGGAATTGAAGCAACTTTGTTTTTACTGCGATTACTATTCGCTTTATCAATTTGTAACTGGTAGATGGCTGCCCAAGAAGCGCAAGGTTGCCGCTCTACTCAGACAGATAACTCATCTTCAAGCACGTTTCGACTCTTGCTATCCCAGGCTCGTGGCTCGACATGATATCAAATTTGCATTCAAACTAGCCAGAGAGGCAATAGTTCCTCAGATCACACAAACTGAAGATCCTGTCCCAATGAAGCTAAATGAGACTTGTGTTATTTGTTATGAGGATTGTGATGTTAATAGGATGTTTGCAGTTGATGGCTGCTTGCATCGGTACTGCTTTTCTTGTATGAAACAACACATGGAAGTGAAATTACTTCAAGGTTTGGTGCCAAAGTGTCCGCACAAGGGTTGTATGATCGACCTCAACGTTGATAGCTGCACAAAATTCTTGACACCTAAAGATATGGCTACCATGCGCCAACATCTTAAAGAGGCTTCCATACCAGTTTCTGAGAAAGTTTATTGCCCATATCCGAAATGCTCGGCTCTAACGACAAAAGGCGAGGCCTTGGAATACACTAGAGATGTTATTGGTAGTGCCAACCAATCTGGATTGAGGAAATGCATGAAGTGTCATGGTCTTTTCTGCATCAACTGCAAGGTTCCTTGGCATAATCTCGTTTCATGCAGTGACTATAAAGGGTCAAGTAATCTGGAATTAGAAGATGTGAAATTGAAGTCCCTGGCATCGACGTGCCTGTGGCGCCAATGTGTGAAATGTAATCACATGATTGAACTTGCTGAAGGTTGCTATCACATGACTTGCAGATGCGGTCACCAGTTTTGCTATAAATGTGGAGTGGAATGGAAAGTTAAAAAGGCGACGTGTTCTTGCCCGCTCTGGGGTGAGGATTGTATCTGGAATAATGATAATAATAGGGAATTGGATCTTGATGGTATATACTTAGATGAAGAAGAAGAAGAAGAAGAAGAGTTTTATGATTCAGATGATGAACATTATTATATTTGA ATGGACGCCCTTGCACTCGATTCGGACCATGAATTTTCCTATAAACTTCAAATCGAAGAAGCTCTCGACGCATCACTCGCTTCCTCTGCCTCTTCCTTCACTCCTCTGCCAGAATTTCAAGAACTCGAAGGGAATGATATCACGACAATCGGTACGCTCTACTCCGGTGAACTCGGGGAATGCGATCAAATATTCCAAGAATGGCTGCAATCGGCGTTCGACACGCGCAGGACTCACGATTCCGGGGAGATTCTAAATATTCCCGATGGTGACTTGAGTGAGCGCGAATATAGTATTGGGAAATCCTTCGGGGAGGGATCCTCGAAGAGCGAGGAGAATCAGGGCGTTTCTAGCCTCTATTTCAAGGGTCTTGTAAGTGAGGAAGGGATTGGAATTGGGCTGAACGCAGCTATTGATTTGGAATTGAAGCAACTTTGTTTTTACTGCGATTACTATTCGCTTTATCAATTTGTAACTGGTAGATGGCTGCCCAAGAAGCGCAAGGTTGCCGCTCTACTCAGACAGATAACTCATCTTCAAGCACGTTTCGACTCTTGCTATCCCAGGCTCGTGGCTCGACATGATATCAAATTTGCATTCAAACTAGCCAGAGAGGCAATAGTTCCTCAGATCACACAAACTGAAGATCCTGTCCCAATGAAGCTAAATGAGACTTGTGTTATTTGTTATGAGGATTGTGATGTTAATAGGATGTTTGCAGTTGATGGCTGCTTGCATCGGTACTGCTTTTCTTGTATGAAACAACACATGGAAGTGAAATTACTTCAAGGTTTGGTGCCAAAGTGTCCGCACAAGGGTTGTATGATCGACCTCAACGTTGATAGCTGCACAAAATTCTTGACACCTAAAGATATGGCTACCATGCGCCAACATCTTAAAGAGGCTTCCATACCAGTTTCTGAGAAAGTTTATTGCCCATATCCGAAATGCTCGGCTCTAACGACAAAAGGCGAGGCCTTGGAATACACTAGAGATGTTATTGGTAGTGCCAACCAATCTGGATTGAGGAAATGCATGAAGTGTCATGGTCTTTTCTGCATCAACTGCAAGGTTCCTTGGCATAATCTCGTTTCATGCAGTGACTATAAAGGGTCAAGTAATCTGGAATTAGAAGATGTGAAATTGAAGTCCCTGGCATCGACGTGCCTGTGGCGCCAATGTGTGAAATGTAATCACATGATTGAACTTGCTGAAGGTTGCTATCACATGACTTGCAGATGCGGTCACCAGTTTTGCTATAAATGTGGAGTGGAATGGAAAGTTAAAAAGGCGACGTGTTCTTGCCCGCTCTGGGGTGAGGATTGTATCTGGAATAATGATAATAATAGGGAATTGGATCTTGATGGTATATACTTAGATGAAGAAGAAGAAGAAGAAGAAGAGTTTTATGATTCAGATGATGAACATTATTATATTTGA MDALALDSDHEFSYKLQIEEALDASLASSASSFTPLPEFQELEGNDITTIGTLYSGELGECDQIFQEWLQSAFDTRRTHDSGEILNIPDGDLSEREYSIGKSFGEGSSKSEENQGVSSLYFKGLVSEEGIGIGLNAAIDLELKQLCFYCDYYSLYQFVTGRWLPKKRKVAALLRQITHLQARFDSCYPRLVARHDIKFAFKLAREAIVPQITQTEDPVPMKLNETCVICYEDCDVNRMFAVDGCLHRYCFSCMKQHMEVKLLQGLVPKCPHKGCMIDLNVDSCTKFLTPKDMATMRQHLKEASIPVSEKVYCPYPKCSALTTKGEALEYTRDVIGSANQSGLRKCMKCHGLFCINCKVPWHNLVSCSDYKGSSNLELEDVKLKSLASTCLWRQCVKCNHMIELAEGCYHMTCRCGHQFCYKCGVEWKVKKATCSCPLWGEDCIWNNDNNRELDLDGIYLDEEEEEEEEFYDSDDEHYYI Homology
BLAST of CmaCh02G008720.1 vs. ExPASy Swiss-Prot
Match: Q6T486 (Probable E3 ubiquitin-protein ligase rbrA OS=Dictyostelium discoideum OX=44689 GN=rbrA PE=3 SV=1) HSP 1 Score: 89.7 bits (221), Expect = 9.5e-17 Identity = 75/282 (26.60%), Postives = 126/282 (44.68%), Query Frame = 0
BLAST of CmaCh02G008720.1 vs. ExPASy Swiss-Prot
Match: Q8TC41 (Probable E3 ubiquitin-protein ligase RNF217 OS=Homo sapiens OX=9606 GN=RNF217 PE=2 SV=4) HSP 1 Score: 87.0 bits (214), Expect = 6.1e-16 Identity = 63/223 (28.25%), Postives = 94/223 (42.15%), Query Frame = 0
BLAST of CmaCh02G008720.1 vs. ExPASy Swiss-Prot
Match: D3YYI7 (Probable E3 ubiquitin-protein ligase RNF217 OS=Mus musculus OX=10090 GN=Rnf217 PE=3 SV=2) HSP 1 Score: 86.7 bits (213), Expect = 8.0e-16 Identity = 63/223 (28.25%), Postives = 97/223 (43.50%), Query Frame = 0
BLAST of CmaCh02G008720.1 vs. ExPASy Swiss-Prot
Match: Q4KLT0 (Probable E3 ubiquitin-protein ligase RNF217 OS=Xenopus laevis OX=8355 GN=rnf217 PE=2 SV=1) HSP 1 Score: 82.4 bits (202), Expect = 1.5e-14 Identity = 57/212 (26.89%), Postives = 98/212 (46.23%), Query Frame = 0
BLAST of CmaCh02G008720.1 vs. ExPASy Swiss-Prot
Match: P0CE10 (ATP-dependent RNA helicase DEAH11, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At4g01020 PE=3 SV=1) HSP 1 Score: 80.9 bits (198), Expect = 4.4e-14 Identity = 51/208 (24.52%), Postives = 83/208 (39.90%), Query Frame = 0
BLAST of CmaCh02G008720.1 vs. TAIR 10
Match: AT5G60250.1 (zinc finger (C3HC4-type RING finger) family protein ) HSP 1 Score: 363.2 bits (931), Expect = 3.2e-100 Identity = 211/560 (37.68%), Postives = 297/560 (53.04%), Query Frame = 0
BLAST of CmaCh02G008720.1 vs. TAIR 10
Match: AT2G25370.1 (RING/U-box superfamily protein ) HSP 1 Score: 276.9 bits (707), Expect = 3.0e-74 Identity = 139/309 (44.98%), Postives = 194/309 (62.78%), Query Frame = 0
BLAST of CmaCh02G008720.1 vs. TAIR 10
Match: AT2G25360.1 (RING/U-box superfamily protein ) HSP 1 Score: 273.1 bits (697), Expect = 4.3e-73 Identity = 153/345 (44.35%), Postives = 204/345 (59.13%), Query Frame = 0
BLAST of CmaCh02G008720.1 vs. TAIR 10
Match: AT2G25370.2 (RING/U-box superfamily protein ) HSP 1 Score: 260.4 bits (664), Expect = 2.9e-69 Identity = 144/351 (41.03%), Postives = 201/351 (57.26%), Query Frame = 0
BLAST of CmaCh02G008720.1 vs. TAIR 10
Match: AT3G45580.1 (RING/U-box protein with C6HC-type zinc finger ) HSP 1 Score: 260.0 bits (663), Expect = 3.8e-69 Identity = 140/371 (37.74%), Postives = 201/371 (54.18%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
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