CmaCh00G002520.1 (mRNA) Cucurbita maxima (Rimu) v1.1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGTCAAAAAGATCTTCTGCTTTATATGATTATCAATCAAATAAAAGATTCTTCTATGTAGCAATCCTTACATCTCCTACTACTAGTGGGGTGACAGCTAGTTTTGGTATCTTGGGGGATATCATTATTGCCGAACCCAATGCCTACATCGCATTTGCGGGTAAAAGAGTAATTTCTTGAACATTGATTGAATACGACAGTCCGTAGGGTTCCCAGGTGGCTGACGTTCAATAAGGGCTTATTCGATCTAAACCACGTAATCCTTTAAAAGGTGTTTGAGTGAGTTATTTCAGCTCCACGCTTTCGTTTCCTCGAATCAAAATTCAATCAAGTCAAACCTTACTTAAAACTCTTCCAAAATTCATTCTCAGTCTTTGTAACGAACAAGTAGTTATTTAGTTTATAGGAATCAAAGTCAAAATTCGCAGAATGGATTTTTCTTTGGTAACATAAGATGAAATTGTAGAAAGAATCATGCGGAGAAATGGGTTTGACCGATATTCCTGATTAGTAATTAGGAAGCCCCTATTAAATAAAAGAGCTAATTCTTTCTTCCGCTAAATTAGGCAAGAATAAAATGAATGAATTTCATGCTCCCTTCTTACATTACATGTGGATATATAATCCAACTATAGCAAATAGCGGCATAGAGTCTTGTATCTTTCTACATCTCTAGAGGATCTCTAGTTTGACTACGAGTCCCTGTTGTTGGATCGGATTGTAATGAACTTTTGGGTAACAAGTAGATATTACTTTGTGGAATTATATATGAATTAGTATAATTATCCGATACCTTTTATAAAAAGAAATAAATAACAGGTAAATTAATATAACAAGAAATAACAGGTATAAATATTAAGTCGAGGTATCCATTCTATGACAAACTTACTCTCTCTCTACTTTTGTGCCTTTAGTAGGCATAGTATTTCCGGCAATTGCAATGGCTTCTTTATCTCTTCATGTTCAAAAAAACAAAATTATTTATGCTACAAGTCTATTTGTTTTTTTCAAAACTTAGACTTTGACGATAACACAGCTATCTATTTAGTAGACGGCAGTCTAACATGTGGCTGACTCCAAACATAAGTGATTATACATGCGTAAACATGATATCTGAGGAAATGAATTAGAAAGTCTTTGAAAATCTCCAATAACAGATCGGGCGACGAATGGTTGAGATGTCAAATCAATATATCTATATGGATGTAGGTATCCATAGGGAATCATATAAAGGTGATGTTATTATTTGAGATCTAAGTAATTCGATGAGTTACTCCATTAGTCAAGGTTCACATCAAAATAGTGTTAGTTGATTAGAGTTACTTCGGAACAAAAAAAGTCAAATATCCACGTTATTCTATCAATTCCAATAAAATGCAACGAGATCTAGTATGAGTTGGCAATCAGAACGTACATGGATAGAATTTATAAGAACGAGGATCTCAAAAGCAATTTCCCATGGGCCTTTATCTATCCCCTTTTTTTAGGTTCATTAGGGTGTTGGTTGGAACTTCGAGTTGTCTTGCTTGGTAGGGATTTGATATCTTGATTTCCATCTCAACAAAGAATTTCTTTGTTTTCCACAGGGGATTGTAATGTCTTTCTATGAGATTGTAGGTCTCTTTATTAGCTCCTATTTATGGTGCACCATTTTGTGGAATGTAGGTAGTGGTTATGATCGATTCGATGGAAAAGAAGAAATAG ATGTCAAAAAGATCTTCTGCTTTATATGATTATCAATCAAATAAAAGATTCTTCTATGTAGCAATCCTTACATCTCCTACTACTAGTGGGGTGACAGCTAGTTTTGGTATCTTGGGGGATATCATTATTGCCGAACCCAATGCCTACATCGCATTTGCGGTCCGTAGGGTTCCCAGGTGGCTGACGTTCAATAAGGGCTTATTCGATCTAAACCACGTAGTGGTTATGATCGATTCGATGGAAAAGAAGAAATAG ATGTCAAAAAGATCTTCTGCTTTATATGATTATCAATCAAATAAAAGATTCTTCTATGTAGCAATCCTTACATCTCCTACTACTAGTGGGGTGACAGCTAGTTTTGGTATCTTGGGGGATATCATTATTGCCGAACCCAATGCCTACATCGCATTTGCGGTCCGTAGGGTTCCCAGGTGGCTGACGTTCAATAAGGGCTTATTCGATCTAAACCACGTAGTGGTTATGATCGATTCGATGGAAAAGAAGAAATAG MSKRSSALYDYQSNKRFFYVAILTSPTTSGVTASFGILGDIIIAEPNAYIAFAVRRVPRWLTFNKGLFDLNHVVVMIDSMEKKK Homology
BLAST of CmaCh00G002520.1 vs. ExPASy Swiss-Prot
Match: A0A344 (Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, chloroplastic OS=Coffea arabica OX=13443 GN=accD PE=3 SV=2) HSP 1 Score: 98.6 bits (244), Expect = 3.6e-20 Identity = 55/84 (65.48%), Postives = 60/84 (71.43%), Query Frame = 0
BLAST of CmaCh00G002520.1 vs. ExPASy Swiss-Prot
Match: Q0G9L0 (Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, chloroplastic OS=Liriodendron tulipifera OX=3415 GN=accD PE=3 SV=1) HSP 1 Score: 98.6 bits (244), Expect = 3.6e-20 Identity = 54/83 (65.06%), Postives = 61/83 (73.49%), Query Frame = 0
BLAST of CmaCh00G002520.1 vs. ExPASy Swiss-Prot
Match: Q09X08 (Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, chloroplastic OS=Morus indica OX=248361 GN=accD PE=3 SV=1) HSP 1 Score: 98.6 bits (244), Expect = 3.6e-20 Identity = 54/83 (65.06%), Postives = 60/83 (72.29%), Query Frame = 0
BLAST of CmaCh00G002520.1 vs. ExPASy Swiss-Prot
Match: B1A944 (Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, chloroplastic OS=Carica papaya OX=3649 GN=accD PE=3 SV=1) HSP 1 Score: 97.8 bits (242), Expect = 6.1e-20 Identity = 54/83 (65.06%), Postives = 60/83 (72.29%), Query Frame = 0
BLAST of CmaCh00G002520.1 vs. ExPASy Swiss-Prot
Match: Q09MG9 (Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, chloroplastic OS=Citrus sinensis OX=2711 GN=accD PE=3 SV=1) HSP 1 Score: 97.8 bits (242), Expect = 6.1e-20 Identity = 54/83 (65.06%), Postives = 60/83 (72.29%), Query Frame = 0
BLAST of CmaCh00G002520.1 vs. ExPASy TrEMBL
Match: A0A411JX73 (Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta OS=Reaumuria trigyna OX=1091135 GN=accD PE=3 SV=1) HSP 1 Score: 102.4 bits (254), Expect = 9.1e-19 Identity = 57/84 (67.86%), Postives = 62/84 (73.81%), Query Frame = 0
BLAST of CmaCh00G002520.1 vs. ExPASy TrEMBL
Match: A0A411JWZ8 (Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta OS=Hololachna songarica OX=194564 GN=accD PE=3 SV=1) HSP 1 Score: 102.4 bits (254), Expect = 9.1e-19 Identity = 57/84 (67.86%), Postives = 62/84 (73.81%), Query Frame = 0
BLAST of CmaCh00G002520.1 vs. ExPASy TrEMBL
Match: A0A411JTP1 (Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta OS=Myricaria paniculata OX=426457 GN=accD PE=3 SV=1) HSP 1 Score: 100.9 bits (250), Expect = 2.7e-18 Identity = 56/83 (67.47%), Postives = 60/83 (72.29%), Query Frame = 0
BLAST of CmaCh00G002520.1 vs. ExPASy TrEMBL
Match: A0A6M3RJ11 (Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, chloroplastic OS=Myricaria laxiflora OX=223224 GN=accD PE=3 SV=1) HSP 1 Score: 100.9 bits (250), Expect = 2.7e-18 Identity = 56/83 (67.47%), Postives = 60/83 (72.29%), Query Frame = 0
BLAST of CmaCh00G002520.1 vs. ExPASy TrEMBL
Match: A0A6G9IEF0 (Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, chloroplastic OS=Cistanche salsa OX=161396 GN=accD PE=3 SV=1) HSP 1 Score: 100.5 bits (249), Expect = 3.5e-18 Identity = 57/84 (67.86%), Postives = 63/84 (75.00%), Query Frame = 0
BLAST of CmaCh00G002520.1 vs. NCBI nr
Match: YP_009569606.1 (acetyl-CoA carboxylase carboxyltransferase beta subunit [Reaumuria trigyna] >QBC69698.1 acetyl-CoA carboxylase carboxyltransferase beta subunit [Reaumuria trigyna]) HSP 1 Score: 102.4 bits (254), Expect = 1.9e-18 Identity = 57/84 (67.86%), Postives = 62/84 (73.81%), Query Frame = 0
BLAST of CmaCh00G002520.1 vs. NCBI nr
Match: YP_009570281.1 (acetyl-CoA carboxylase carboxyltransferase beta subunit [Hololachna songarica] >QBC69616.1 acetyl-CoA carboxylase carboxyltransferase beta subunit [Hololachna songarica]) HSP 1 Score: 102.4 bits (254), Expect = 1.9e-18 Identity = 57/84 (67.86%), Postives = 62/84 (73.81%), Query Frame = 0
BLAST of CmaCh00G002520.1 vs. NCBI nr
Match: QYC94160.1 (acetyl-CoA carboxylase beta subunit [Myricaria elegans]) HSP 1 Score: 100.9 bits (250), Expect = 5.5e-18 Identity = 56/83 (67.47%), Postives = 60/83 (72.29%), Query Frame = 0
BLAST of CmaCh00G002520.1 vs. NCBI nr
Match: QJD22475.1 (acetyl-CoA carboxylase carboxyltransferase beta subunit [Myricaria laxiflora]) HSP 1 Score: 100.9 bits (250), Expect = 5.5e-18 Identity = 56/83 (67.47%), Postives = 60/83 (72.29%), Query Frame = 0
BLAST of CmaCh00G002520.1 vs. NCBI nr
Match: YP_009570029.1 (acetyl-CoA carboxylase carboxyltransferase beta subunit [Myricaria paniculata] >QBC68452.1 acetyl-CoA carboxylase carboxyltransferase beta subunit [Myricaria paniculata]) HSP 1 Score: 100.9 bits (250), Expect = 5.5e-18 Identity = 56/83 (67.47%), Postives = 60/83 (72.29%), Query Frame = 0
BLAST of CmaCh00G002520.1 vs. TAIR 10
Match: ATCG00500.1 (acetyl-CoA carboxylase carboxyl transferase subunit beta ) HSP 1 Score: 85.9 bits (211), Expect = 1.7e-17 Identity = 43/57 (75.44%), Postives = 50/57 (87.72%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
|