Clc01G23095.1 (mRNA) Watermelon (cordophanus) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGTTTGGAACTTTGATGGCAACGCTTCCTTGTTCTAAATTTGCTGTTCTATATCCAAAATTTTGCAGCTATAAATTGGAAGACTTTCATAAATGCCATTGCCAACACCCATTAACCAAATCAGAGCAATACTTCACCAAAACCAAAGAAACCAAAATTATGGCTAAGACTATTACTTCTATTGCCATCTTCCTGTTGGCTTTCTCTCTTCTCATTTTCTCAGTTTCTGTAGAAGGTCGTACTCCCTTTTCATACTCATTGATTCTTAATATATATCCCTGTTTGGAATTATTATTATGTTCCGTTTAGAACGACTGTGTGTGTTTAAAAAAGTTTTTTTAAACACTTAAAAAATCACTTCAAATAGATACTTGCTCTTATTTCTAACCTCATTACATATTAATTATGCTACCATTCTTAATTCAACTTTTGTACTTTTCATATTTTATTACAACTTTGGATATAAAAAAAAAAAATTTATACCATACATTTTGAGGGTGTACTACTTAAAACCTAAACTAATGATTGTATCAATTAAAACCCTAAACTTTTATATGTGAATCAATTTACATTTTTTGGATAGAATTTCATTTTAAATTGTTAATACATCATTTTCACATTTATATTAAACTCTTCTATAAATATACACATTTGACGTCATATTAAAAAGAAATGTTAAAACCACATGAATAGTATTCTATTTTTCTCTACTTATTTATGAAGAATTACATGATTGGTGGAGGAATTTGGGAATAAATAATTTTATTTAAGTGAATTTGAATTGATTTTAAATGAAAGTGAGTAAAAATAGTTAGTTTGTTGATTTTGTGAGTTTGAAAGTGCAGGTGGGACTATTAAGCCAGAAGCAAGGTTGGAGTTGCAATGCAACAGAGTTGTTGGAGTGAAGAGTGGAGACACCTGCTTTGACCTTGCTCACACATTCAAGCTCTCCACTGACCACTTCAATTTTATCAATCCAAATCTCAATTGCTCTGCTCTCTTCGTTGGCCAGTGGCTCTGTCTCAATGCTTTTCTTGGCTGA ATGTTTGGAACTTTGATGGCAACGCTTCCTTGTTCTAAATTTGCTGTTCTATATCCAAAATTTTGCAGCTATAAATTGGAAGACTTTCATAAATGCCATTGCCAACACCCATTAACCAAATCAGAGCAATACTTCACCAAAACCAAAGAAACCAAAATTATGGCTAAGACTATTACTTCTATTGCCATCTTCCTGTTGGCTTTCTCTCTTCTCATTTTCTCAGTTTCTGTAGAAGGTCAAGCAAGGTTGGAGTTGCAATGCAACAGAGTTGTTGGAGTGAAGAGTGGAGACACCTGCTTTGACCTTGCTCACACATTCAAGCTCTCCACTGACCACTTCAATTTTATCAATCCAAATCTCAATTGCTCTGCTCTCTTCGTTGGCCAGTGGCTCTGTCTCAATGCTTTTCTTGGCTGA ATGTTTGGAACTTTGATGGCAACGCTTCCTTGTTCTAAATTTGCTGTTCTATATCCAAAATTTTGCAGCTATAAATTGGAAGACTTTCATAAATGCCATTGCCAACACCCATTAACCAAATCAGAGCAATACTTCACCAAAACCAAAGAAACCAAAATTATGGCTAAGACTATTACTTCTATTGCCATCTTCCTGTTGGCTTTCTCTCTTCTCATTTTCTCAGTTTCTGTAGAAGGTCAAGCAAGGTTGGAGTTGCAATGCAACAGAGTTGTTGGAGTGAAGAGTGGAGACACCTGCTTTGACCTTGCTCACACATTCAAGCTCTCCACTGACCACTTCAATTTTATCAATCCAAATCTCAATTGCTCTGCTCTCTTCGTTGGCCAGTGGCTCTGTCTCAATGCTTTTCTTGGCTGA MFGTLMATLPCSKFAVLYPKFCSYKLEDFHKCHCQHPLTKSEQYFTKTKETKIMAKTITSIAIFLLAFSLLIFSVSVEGQARLELQCNRVVGVKSGDTCFDLAHTFKLSTDHFNFINPNLNCSALFVGQWLCLNAFLG Homology
BLAST of Clc01G23095.1 vs. NCBI nr
Match: XP_016899229.1 (PREDICTED: lysM domain-containing protein ARB_00327-like [Cucumis melo]) HSP 1 Score: 137.5 bits (345), Expect = 8.7e-29 Identity = 69/89 (77.53%), Postives = 74/89 (83.15%), Query Frame = 0
BLAST of Clc01G23095.1 vs. NCBI nr
Match: XP_031742455.1 (lysM domain-containing protein ARB_00327-like [Cucumis sativus]) HSP 1 Score: 127.9 bits (320), Expect = 6.9e-26 Identity = 64/89 (71.91%), Postives = 73/89 (82.02%), Query Frame = 0
BLAST of Clc01G23095.1 vs. NCBI nr
Match: KGN49182.1 (hypothetical protein Csa_004378 [Cucumis sativus]) HSP 1 Score: 125.9 bits (315), Expect = 2.6e-25 Identity = 64/94 (68.09%), Postives = 73/94 (77.66%), Query Frame = 0
BLAST of Clc01G23095.1 vs. NCBI nr
Match: KGN49183.1 (hypothetical protein Csa_003390 [Cucumis sativus]) HSP 1 Score: 115.2 bits (287), Expect = 4.6e-22 Identity = 60/95 (63.16%), Postives = 72/95 (75.79%), Query Frame = 0
BLAST of Clc01G23095.1 vs. NCBI nr
Match: TMW90128.1 (hypothetical protein EJD97_016167 [Solanum chilense]) HSP 1 Score: 92.4 bits (228), Expect = 3.2e-15 Identity = 47/98 (47.96%), Postives = 61/98 (62.24%), Query Frame = 0
BLAST of Clc01G23095.1 vs. ExPASy TrEMBL
Match: A0A1S4DTB4 (lysM domain-containing protein ARB_00327-like OS=Cucumis melo OX=3656 GN=LOC107990452 PE=4 SV=1) HSP 1 Score: 137.5 bits (345), Expect = 4.2e-29 Identity = 69/89 (77.53%), Postives = 74/89 (83.15%), Query Frame = 0
BLAST of Clc01G23095.1 vs. ExPASy TrEMBL
Match: A0A0A0KLD2 (LysM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G516900 PE=4 SV=1) HSP 1 Score: 125.9 bits (315), Expect = 1.3e-25 Identity = 64/94 (68.09%), Postives = 73/94 (77.66%), Query Frame = 0
BLAST of Clc01G23095.1 vs. ExPASy TrEMBL
Match: A0A0A0KHZ8 (LysM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G516910 PE=4 SV=1) HSP 1 Score: 115.2 bits (287), Expect = 2.2e-22 Identity = 60/95 (63.16%), Postives = 72/95 (75.79%), Query Frame = 0
BLAST of Clc01G23095.1 vs. ExPASy TrEMBL
Match: M1C1H7 (LysM domain-containing protein OS=Solanum tuberosum OX=4113 PE=4 SV=1) HSP 1 Score: 94.4 bits (233), Expect = 4.1e-16 Identity = 46/92 (50.00%), Postives = 61/92 (66.30%), Query Frame = 0
BLAST of Clc01G23095.1 vs. ExPASy TrEMBL
Match: A0A6N2B813 (LysM domain-containing protein OS=Solanum chilense OX=4083 GN=EJD97_016167 PE=4 SV=1) HSP 1 Score: 92.4 bits (228), Expect = 1.6e-15 Identity = 47/98 (47.96%), Postives = 61/98 (62.24%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
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