Clc01G23095 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc01G23095
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	LysM domain-containing protein
Location	ClcChr01: 33967389 .. 33968430 (+)
RNA-Seq Expression	Clc01G23095
Synteny	Clc01G23095

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTTGGAACTTTGATGGCAACGCTTCCTTGTTCTAAATTTGCTGTTCTATATCCAAAATTTTGCAGCTATAAATTGGAAGACTTTCATAAATGCCATTGCCAACACCCATTAACCAAATCAGAGCAATACTTCACCAAAACCAAAGAAACCAAAATTATGGCTAAGACTATTACTTCTATTGCCATCTTCCTGTTGGCTTTCTCTCTTCTCATTTTCTCAGTTTCTGTAGAAGGTCGTACTCCCTTTTCATACTCATTGATTCTTAATATATATCCCTGTTTGGAATTATTATTATGTTCCGTTTAGAACGACTGTGTGTGTTTAAAAAAGTTTTTTTAAACACTTAAAAAATCACTTCAAATAGATACTTGCTCTTATTTCTAACCTCATTACATATTAATTATGCTACCATTCTTAATTCAACTTTTGTACTTTTCATATTTTATTACAACTTTGGATATAAAAAAAAAAAATTTATACCATACATTTTGAGGGTGTACTACTTAAAACCTAAACTAATGATTGTATCAATTAAAACCCTAAACTTTTATATGTGAATCAATTTACATTTTTTGGATAGAATTTCATTTTAAATTGTTAATACATCATTTTCACATTTATATTAAACTCTTCTATAAATATACACATTTGACGTCATATTAAAAAGAAATGTTAAAACCACATGAATAGTATTCTATTTTTCTCTACTTATTTATGAAGAATTACATGATTGGTGGAGGAATTTGGGAATAAATAATTTTATTTAAGTGAATTTGAATTGATTTTAAATGAAAGTGAGTAAAAATAGTTAGTTTGTTGATTTTGTGAGTTTGAAAGTGCAGGTGGGACTATTAAGCCAGAAGCAAGGTTGGAGTTGCAATGCAACAGAGTTGTTGGAGTGAAGAGTGGAGACACCTGCTTTGACCTTGCTCACACATTCAAGCTCTCCACTGACCACTTCAATTTTATCAATCCAAATCTCAATTGCTCTGCTCTCTTCGTTGGCCAGTGGCTCTGTCTCAATGCTTTTCTTGGCTGA

mRNA sequence

ATGTTTGGAACTTTGATGGCAACGCTTCCTTGTTCTAAATTTGCTGTTCTATATCCAAAATTTTGCAGCTATAAATTGGAAGACTTTCATAAATGCCATTGCCAACACCCATTAACCAAATCAGAGCAATACTTCACCAAAACCAAAGAAACCAAAATTATGGCTAAGACTATTACTTCTATTGCCATCTTCCTGTTGGCTTTCTCTCTTCTCATTTTCTCAGTTTCTGTAGAAGGTCAAGCAAGGTTGGAGTTGCAATGCAACAGAGTTGTTGGAGTGAAGAGTGGAGACACCTGCTTTGACCTTGCTCACACATTCAAGCTCTCCACTGACCACTTCAATTTTATCAATCCAAATCTCAATTGCTCTGCTCTCTTCGTTGGCCAGTGGCTCTGTCTCAATGCTTTTCTTGGCTGA

Coding sequence (CDS)

ATGTTTGGAACTTTGATGGCAACGCTTCCTTGTTCTAAATTTGCTGTTCTATATCCAAAATTTTGCAGCTATAAATTGGAAGACTTTCATAAATGCCATTGCCAACACCCATTAACCAAATCAGAGCAATACTTCACCAAAACCAAAGAAACCAAAATTATGGCTAAGACTATTACTTCTATTGCCATCTTCCTGTTGGCTTTCTCTCTTCTCATTTTCTCAGTTTCTGTAGAAGGTCAAGCAAGGTTGGAGTTGCAATGCAACAGAGTTGTTGGAGTGAAGAGTGGAGACACCTGCTTTGACCTTGCTCACACATTCAAGCTCTCCACTGACCACTTCAATTTTATCAATCCAAATCTCAATTGCTCTGCTCTCTTCGTTGGCCAGTGGCTCTGTCTCAATGCTTTTCTTGGCTGA

Protein sequence

MFGTLMATLPCSKFAVLYPKFCSYKLEDFHKCHCQHPLTKSEQYFTKTKETKIMAKTITSIAIFLLAFSLLIFSVSVEGQARLELQCNRVVGVKSGDTCFDLAHTFKLSTDHFNFINPNLNCSALFVGQWLCLNAFLG

Homology

[Close]

BLAST of Clc01G23095 vs. NCBI nr
Match: XP_016899229.1 (PREDICTED: lysM domain-containing protein ARB_00327-like [Cucumis melo])

HSP 1 Score: 137.5 bits (345), Expect = 8.7e-29
Identity = 69/89 (77.53%), Postives = 74/89 (83.15%), Query Frame = 0


Query: 54  MAKTITSIAIFLLAFSLLIFSVSVEGQA-----RLELQCNRVVGVKSGDTCFDLAHTFKL 113
           MAK    IAIFLLAF LLIFS+SV+G+       LELQCN+  GVKSGDTCF LAHTFKL
Sbjct: 1   MAKATIPIAIFLLAFFLLIFSISVKGEVVAAEPSLELQCNKAYGVKSGDTCFALAHTFKL 60

Query: 114 STDHFNFINPNLNCSALFVGQWLCLNAFL 138
           STDHFNFINPNLNCSALFVGQWLC+NAFL
Sbjct: 61  STDHFNFINPNLNCSALFVGQWLCVNAFL 89

[Close]

BLAST of Clc01G23095 vs. NCBI nr
Match: XP_031742455.1 (lysM domain-containing protein ARB_00327-like [Cucumis sativus])

HSP 1 Score: 127.9 bits (320), Expect = 6.9e-26
Identity = 64/89 (71.91%), Postives = 73/89 (82.02%), Query Frame = 0


Query: 54  MAKTITSIAIFLLAFSLLIFSVSVEG-----QARLELQCNRVVGVKSGDTCFDLAHTFKL 113
           MAK   SIAIFLLA SLLIF++SV+G     +A LELQCN+  GVKSGDTCF +A  FKL
Sbjct: 1   MAKATISIAIFLLASSLLIFNISVKGEVVVEEASLELQCNKAYGVKSGDTCFAIAQAFKL 60

Query: 114 STDHFNFINPNLNCSALFVGQWLCLNAFL 138
           +TDHF+FINPNLNCSALFV QWLC+NAFL
Sbjct: 61  TTDHFDFINPNLNCSALFVSQWLCVNAFL 89

[Close]

BLAST of Clc01G23095 vs. NCBI nr
Match: KGN49182.1 (hypothetical protein Csa_004378 [Cucumis sativus])

HSP 1 Score: 125.9 bits (315), Expect = 2.6e-25
Identity = 64/94 (68.09%), Postives = 73/94 (77.66%), Query Frame = 0


Query: 54  MAKTITSIAIFLLAFSLLIFSVSVEG----------QARLELQCNRVVGVKSGDTCFDLA 113
           MAK   SIAIFLLA SLLIF++SV+G          +A LELQCN+  GVKSGDTCF +A
Sbjct: 1   MAKATISIAIFLLASSLLIFNISVKGRNLFREVVVEEASLELQCNKAYGVKSGDTCFAIA 60

Query: 114 HTFKLSTDHFNFINPNLNCSALFVGQWLCLNAFL 138
             FKL+TDHF+FINPNLNCSALFV QWLC+NAFL
Sbjct: 61  QAFKLTTDHFDFINPNLNCSALFVSQWLCVNAFL 94

[Close]

BLAST of Clc01G23095 vs. NCBI nr
Match: KGN49183.1 (hypothetical protein Csa_003390 [Cucumis sativus])

HSP 1 Score: 115.2 bits (287), Expect = 4.6e-22
Identity = 60/95 (63.16%), Postives = 72/95 (75.79%), Query Frame = 0


Query: 54  MAKTI--TSIAIFLLAFSLLIFSVSVEG---------QARLELQCNRVVGVKSGDTCFDL 113
           MAK +  +S  IFLLAFSLLIFS+SVE          +A LELQCN+V GVK+GDTCFDL
Sbjct: 1   MAKAMISSSFPIFLLAFSLLIFSISVETRSTPFRGVVEAGLELQCNKVYGVKNGDTCFDL 60

Query: 114 AHTFKLSTDHFNFINPNLNCSALFVGQWLCLNAFL 138
              FK++T HF+FINPNLNC+ LF+GQWLCL+A L
Sbjct: 61  EQKFKITTPHFSFINPNLNCTDLFIGQWLCLDAVL 95

[Close]

BLAST of Clc01G23095 vs. NCBI nr
Match: TMW90128.1 (hypothetical protein EJD97_016167 [Solanum chilense])

HSP 1 Score: 92.4 bits (228), Expect = 3.2e-15
Identity = 47/98 (47.96%), Postives = 61/98 (62.24%), Query Frame = 0


Query: 54  MAKTITSIAIFLLAFSLLIFSVSVEGQARL--------------ELQCNRVVGVKSGDTC 113
           MAK    +  F+L  SLL+F   VE +  +              E++C++VV VK GDTC
Sbjct: 1   MAKPNNRVLSFILILSLLLFITLVESKFTIHEGSSLSPSPSPPSEIECSKVVNVKDGDTC 60

Query: 114 FDLAHTFKLSTDHFNFINPNLNCSALFVGQWLCLNAFL 138
           FD++HTF L  D FN INPNLNC+ALFVGQWLC++  L
Sbjct: 61  FDVSHTFGLGGDEFNAINPNLNCTALFVGQWLCVDGTL 98

[Close]

BLAST of Clc01G23095 vs. ExPASy TrEMBL
Match: A0A1S4DTB4 (lysM domain-containing protein ARB_00327-like OS=Cucumis melo OX=3656 GN=LOC107990452 PE=4 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 4.2e-29
Identity = 69/89 (77.53%), Postives = 74/89 (83.15%), Query Frame = 0


Query: 54  MAKTITSIAIFLLAFSLLIFSVSVEGQA-----RLELQCNRVVGVKSGDTCFDLAHTFKL 113
           MAK    IAIFLLAF LLIFS+SV+G+       LELQCN+  GVKSGDTCF LAHTFKL
Sbjct: 1   MAKATIPIAIFLLAFFLLIFSISVKGEVVAAEPSLELQCNKAYGVKSGDTCFALAHTFKL 60

Query: 114 STDHFNFINPNLNCSALFVGQWLCLNAFL 138
           STDHFNFINPNLNCSALFVGQWLC+NAFL
Sbjct: 61  STDHFNFINPNLNCSALFVGQWLCVNAFL 89

[Close]

BLAST of Clc01G23095 vs. ExPASy TrEMBL
Match: A0A0A0KLD2 (LysM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G516900 PE=4 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 1.3e-25
Identity = 64/94 (68.09%), Postives = 73/94 (77.66%), Query Frame = 0


Query: 54  MAKTITSIAIFLLAFSLLIFSVSVEG----------QARLELQCNRVVGVKSGDTCFDLA 113
           MAK   SIAIFLLA SLLIF++SV+G          +A LELQCN+  GVKSGDTCF +A
Sbjct: 1   MAKATISIAIFLLASSLLIFNISVKGRNLFREVVVEEASLELQCNKAYGVKSGDTCFAIA 60

Query: 114 HTFKLSTDHFNFINPNLNCSALFVGQWLCLNAFL 138
             FKL+TDHF+FINPNLNCSALFV QWLC+NAFL
Sbjct: 61  QAFKLTTDHFDFINPNLNCSALFVSQWLCVNAFL 94

[Close]

BLAST of Clc01G23095 vs. ExPASy TrEMBL
Match: A0A0A0KHZ8 (LysM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G516910 PE=4 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 2.2e-22
Identity = 60/95 (63.16%), Postives = 72/95 (75.79%), Query Frame = 0


Query: 54  MAKTI--TSIAIFLLAFSLLIFSVSVEG---------QARLELQCNRVVGVKSGDTCFDL 113
           MAK +  +S  IFLLAFSLLIFS+SVE          +A LELQCN+V GVK+GDTCFDL
Sbjct: 1   MAKAMISSSFPIFLLAFSLLIFSISVETRSTPFRGVVEAGLELQCNKVYGVKNGDTCFDL 60

Query: 114 AHTFKLSTDHFNFINPNLNCSALFVGQWLCLNAFL 138
              FK++T HF+FINPNLNC+ LF+GQWLCL+A L
Sbjct: 61  EQKFKITTPHFSFINPNLNCTDLFIGQWLCLDAVL 95

[Close]

BLAST of Clc01G23095 vs. ExPASy TrEMBL
Match: M1C1H7 (LysM domain-containing protein OS=Solanum tuberosum OX=4113 PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 4.1e-16
Identity = 46/92 (50.00%), Postives = 61/92 (66.30%), Query Frame = 0


Query: 54  MAKTITSIAIFLLAFSLLIFSVSVEGQARL--------ELQCNRVVGVKSGDTCFDLAHT 113
           MAK    +  F+L  SLL+F   VE +  +        E++C++VV VK GDTCFD++HT
Sbjct: 1   MAKPNDKVVSFILILSLLLFITLVESKITIHEGSSPKSEIECSKVVNVKDGDTCFDVSHT 60

Query: 114 FKLSTDHFNFINPNLNCSALFVGQWLCLNAFL 138
           F L +D FN INPNL C+ALFVGQWLC++  L
Sbjct: 61  FGLGSDEFNAINPNLKCTALFVGQWLCVDGTL 92

[Close]

BLAST of Clc01G23095 vs. ExPASy TrEMBL
Match: A0A6N2B813 (LysM domain-containing protein OS=Solanum chilense OX=4083 GN=EJD97_016167 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 1.6e-15
Identity = 47/98 (47.96%), Postives = 61/98 (62.24%), Query Frame = 0


Query: 54  MAKTITSIAIFLLAFSLLIFSVSVEGQARL--------------ELQCNRVVGVKSGDTC 113
           MAK    +  F+L  SLL+F   VE +  +              E++C++VV VK GDTC
Sbjct: 1   MAKPNNRVLSFILILSLLLFITLVESKFTIHEGSSLSPSPSPPSEIECSKVVNVKDGDTC 60

Query: 114 FDLAHTFKLSTDHFNFINPNLNCSALFVGQWLCLNAFL 138
           FD++HTF L  D FN INPNLNC+ALFVGQWLC++  L
Sbjct: 61  FDVSHTFGLGGDEFNAINPNLNCTALFVGQWLCVDGTL 98

The following BLAST results are available for this feature:

BLAST of Clc01G23095 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_016899229.1	8.7e-29	77.53	PREDICTED: lysM domain-containing protein ARB_00327-like [Cucumis melo]	[more]
XP_031742455.1	6.9e-26	71.91	lysM domain-containing protein ARB_00327-like [Cucumis sativus]	[more]
KGN49182.1	2.6e-25	68.09	hypothetical protein Csa_004378 [Cucumis sativus]	[more]
KGN49183.1	4.6e-22	63.16	hypothetical protein Csa_003390 [Cucumis sativus]	[more]
TMW90128.1	3.2e-15	47.96	hypothetical protein EJD97_016167 [Solanum chilense]	[more]

BLAST of Clc01G23095 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Clc01G23095 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S4DTB4	4.2e-29	77.53	lysM domain-containing protein ARB_00327-like OS=Cucumis melo OX=3656 GN=LOC1079...	[more]
A0A0A0KLD2	1.3e-25	68.09	LysM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G516900 PE=4 S...	[more]
A0A0A0KHZ8	2.2e-22	63.16	LysM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G516910 PE=4 S...	[more]
M1C1H7	4.1e-16	50.00	LysM domain-containing protein OS=Solanum tuberosum OX=4113 PE=4 SV=1	[more]
A0A6N2B813	1.6e-15	47.96	LysM domain-containing protein OS=Solanum chilense OX=4083 GN=EJD97_016167 PE=4 ...	[more]

BLAST of Clc01G23095 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR018392	LysM domain	SMART	SM00257	LysM_2	coord: 90..134 e-value: 0.0012 score: 28.2
IPR018392	LysM domain	PFAM	PF01476	LysM	coord: 93..133 e-value: 4.5E-6 score: 26.6
IPR018392	LysM domain	PROSITE	PS51782	LYSM	coord: 89..133 score: 11.416754
IPR018392	LysM domain	CDD	cd00118	LysM	coord: 93..133 e-value: 1.1186E-6 score: 40.9317
IPR036779	LysM domain superfamily	GENE3D	3.10.350.10	LysM domain	coord: 87..133 e-value: 7.0E-14 score: 53.7
IPR036779	LysM domain superfamily	SUPERFAMILY	54106	LysM domain	coord: 88..133
None	No IPR available	PANTHER	PTHR34997	AM15	coord: 52..137
None	No IPR available	PANTHER	PTHR34997:SF13	LYSM DOMAIN-CONTAINING PROTEIN-RELATED	coord: 52..137

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc01G23095.1	Clc01G23095.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane