ClCG05G020840.1 (mRNA) Watermelon (Charleston Gray) v2.5

Overview
NameClCG05G020840.1
TypemRNA
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionATP synthase subunit d, mitochondrial
LocationCG_Chr05: 32858010 .. 32860567 (+)
Sequence length923
RNA-Seq ExpressionClCG05G020840.1
SyntenyClCG05G020840.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CGCCGATATCTCTGTTTTGAGCTCTCAACGAATTGCCCTCTCACACATCCCATTGATTCTCTTCTTCTTTCCTCCGCCAAATCGAGAGATAACAACAAGAAAATGAGCGGCACCGTTAAGAAAGTGGCCGATGTTGCCTTCAAAGCATCCAAGAACATCGATTGGGATGGCATGGCCAAGCTTTTGGTCTCCGATGAGGCTCGCAAGGAGTTCTCGTCCCTTCGCCGAGCCTTCGAGGAGGTTAACTCAACCCTCCAGACTAAATTTAGCCAGGTCTGGAAGATTCCAATTTCTCCCCCTTTTTTCTTTTGTTATTTTCACGGTTGCTAGATCTCTCCCTTTTTGTTTGGTTTTGTTGATGTGGGTTGATTTTGTTTGGCTTGAATGTTTCGAGATTGTTCTTATTTTAATTGTGCTTTTCAGGAATTTTTATAGTTGTGTTTAATTTGGTCTTCATTTCGTGCAAATCCGGTGTGATTTTATTCTTATTCGATATATCAATAACTGAGAATCGCAATGTTTCGTTTCTCGTGGGTCATAGAGAGGTTAATGTTGATTTAGTTGTGGTCTGTCTGACTGAGGAAGATCGTTCATAGTAGAATTGGAATTTAGGAAACAAAAATCTTTCTCGTTGTAAAGGAAACATTTCGTACTTGTTTGGATCCAGAAACTGCTATATGCATCAGATGATAAGAACAGGTGATAATTCATTATTGCAGCAATCCTAATGTCTCAGGTAAATTTAGATGAGCAATGTCTTATCTTATATGAAAATGGCAAATCATAACTATTGGTATCAGACATGGATTATTTACTGTCTATTGCATATAGTTCAAGCGCAAATGGGAGTGTTGGAATATGGCCCAAATAGTAAGATGTCAGCACTTCTCTTATGAGTTATAGGTTTTAATCACTCCTTCGTGTGTGTGTGTGTTTTTCCTTTAAAAAAAAAGTGCCACTGGAAGCTAAATTGATTGCTCATAAAGATGATTCTGTTAATTTTGTGCTTTTCCTTTCTATCAGTCAGCAAGTTGATCGTATTTATGACAATTTGTGAAAATTGCTGCCTTACGGACTTTGGTCAAAACTTTCAAGACTTGCATTATTATAAACTGTTTATCTCTGTGTAGGAACCAGAGCCCATAGACTGGGAATATTACAGAAAGGGAATTGGATCCCGCTTGGTGGACATGTACAAAGAGGCTTATGACGGTATGCTCTCTGATTCACTTGTCATTTGAAGTTTATACTTCGATTTTTCTGTGCAATATTTAGACTAGGCAATATTGTGATTTTCTTAGCACAAGTTTGTCTGTGAATTCCAACGCTTCTCTAATTCGAGTCTTCAAAGATAACTTTTCTTGGTTGGGCAGTCTTCGGGGTCAATGATCATATACATACATTATTAATTTGAGATTTTTGTATTTAGACAGCTAGGGCACATCAGTGATTCAATCACCAAAACGTTTAAGTGGCCCTTTTAGCTCAGTGGATGTCACACTACCCTATTGCTGAAATCCTCTGATTGAAGTATTTACAACAATTGTCTTTTATTGGATCACATATCACATTTTATCGGGTATAATAGAGCCTAAATTTTTTCGTTACTCTTGTTCTAATAGGCCAAAATTTTTGTTGTCACAATGTAATTTGCTTGAATTTAGCTTTTCTTCTCCCACATCTCCCACGTATAGCATGGGACCTCAGACATTGTCAGCAATATATCAGGACAGATTAACCATGGTTTTGCATTGACATTAAAGTAGAAACCAATGCCTTTATGATTTGTTTACTTTCTTATTCATTACAATTCGGTTGACCTGCTTCCTTTTTAGGCATTGAGATCCCCAAATTCGTAGACACAGTGACTCCACAGTACAAACCTAAATTTGATGCATTGGTAAGCACCAGTTATATTTCAGTAGATCTGTGTTGTTTCTCTCTGCTGGTAGGTGCTTCATTTATTGTTTATGTGGCAGCTGGTAGAATTGAAGGAAGCTGAAGAAAAGTCTCTAAAGGAGTCTGAGCGGTTGGAGAAGGAGATTGTTGAAGTTCAAGAAATGAAGGTAATGGAAAAGAAAGGATAATTTGATTTCCAATTTTGTAGAAACAAATTCTCACAGCCTGTTATATTCTCGTCAGAAAAAGATCAGCACCATGACTGCTGATGAATACTTTGAGAAGCATCCTGAGTTGAGGAAGAAATTCGATGATGAAATCCGAAACGACTACTGGGGCTATTGACTGGAAATTAAAGTTCAAGCACCAAAGTTTCAGAATTTAATTTCATAAACCTCCCGGGACTTGTTTTGCTGCAGATGTTTGGTCAGTAATAAAACAAACCAGATAGTTCCTCTGAAATTTGGTTGCATTTGCTTTTGGGATTATGGTAACGAAATTGATTAGGGAAACTGAGTTTTTCCTTGAAATGATGTTGTGAGAGTTCCAAATAACTCTTAAGGTTACATTATCATGGAAAATGCATTTTTTTTTAACGAGCTTATTCTGGCTTTCTTATCCTTCCAAGATCAATAAAGAGATGTTACAAGCTTTAAATT

mRNA sequence

CGCCGATATCTCTGTTTTGAGCTCTCAACGAATTGCCCTCTCACACATCCCATTGATTCTCTTCTTCTTTCCTCCGCCAAATCGAGAGATAACAACAAGAAAATGAGCGGCACCGTTAAGAAAGTGGCCGATGTTGCCTTCAAAGCATCCAAGAACATCGATTGGGATGGCATGGCCAAGCTTTTGGTCTCCGATGAGGCTCGCAAGGAGTTCTCGTCCCTTCGCCGAGCCTTCGAGGAGGTTAACTCAACCCTCCAGACTAAATTTAGCCAGGAACCAGAGCCCATAGACTGGGAATATTACAGAAAGGGAATTGGATCCCGCTTGGTGGACATGTACAAAGAGGCTTATGACGGCATTGAGATCCCCAAATTCGTAGACACAGTGACTCCACAGTACAAACCTAAATTTGATGCATTGCTGGTAGAATTGAAGGAAGCTGAAGAAAAGTCTCTAAAGGAGTCTGAGCGGTTGGAGAAGGAGATTGTTGAAGTTCAAGAAATGAAGAAAAAGATCAGCACCATGACTGCTGATGAATACTTTGAGAAGCATCCTGAGTTGAGGAAGAAATTCGATGATGAAATCCGAAACGACTACTGGGGCTATTGACTGGAAATTAAAGTTCAAGCACCAAAGTTTCAGAATTTAATTTCATAAACCTCCCGGGACTTGTTTTGCTGCAGATGTTTGGTCAGTAATAAAACAAACCAGATAGTTCCTCTGAAATTTGGTTGCATTTGCTTTTGGGATTATGGTAACGAAATTGATTAGGGAAACTGAGTTTTTCCTTGAAATGATGTTGTGAGAGTTCCAAATAACTCTTAAGGTTACATTATCATGGAAAATGCATTTTTTTTTAACGAGCTTATTCTGGCTTTCTTATCCTTCCAAGATCAATAAAGAGATGTTACAAGCTTTAAATT

Coding sequence (CDS)

ATGAGCGGCACCGTTAAGAAAGTGGCCGATGTTGCCTTCAAAGCATCCAAGAACATCGATTGGGATGGCATGGCCAAGCTTTTGGTCTCCGATGAGGCTCGCAAGGAGTTCTCGTCCCTTCGCCGAGCCTTCGAGGAGGTTAACTCAACCCTCCAGACTAAATTTAGCCAGGAACCAGAGCCCATAGACTGGGAATATTACAGAAAGGGAATTGGATCCCGCTTGGTGGACATGTACAAAGAGGCTTATGACGGCATTGAGATCCCCAAATTCGTAGACACAGTGACTCCACAGTACAAACCTAAATTTGATGCATTGCTGGTAGAATTGAAGGAAGCTGAAGAAAAGTCTCTAAAGGAGTCTGAGCGGTTGGAGAAGGAGATTGTTGAAGTTCAAGAAATGAAGAAAAAGATCAGCACCATGACTGCTGATGAATACTTTGAGAAGCATCCTGAGTTGAGGAAGAAATTCGATGATGAAATCCGAAACGACTACTGGGGCTATTGA

Protein sequence

MSGTVKKVADVAFKASKNIDWDGMAKLLVSDEARKEFSSLRRAFEEVNSTLQTKFSQEPEPIDWEYYRKGIGSRLVDMYKEAYDGIEIPKFVDTVTPQYKPKFDALLVELKEAEEKSLKESERLEKEIVEVQEMKKKISTMTADEYFEKHPELRKKFDDEIRNDYWGY
Homology
[Close]
BLAST of ClCG05G020840.1 vs. NCBI nr
Match: XP_023541261.1 (ATP synthase subunit d, mitochondrial [Cucurbita pepo subsp. pepo])

HSP 1 Score: 320.9 bits (821), Expect = 6.8e-84
Identity = 163/168 (97.02%), Postives = 165/168 (98.21%), Query Frame = 0 

Query: 1   MSGTVKKVADVAFKASKNIDWDGMAKLLVSDEARKEFSSLRRAFEEVNSTLQTKFSQEPE 60
           MSGTVKKV DVAFKASKNIDWDGMAKLLVSDEARKEFSSLRRAFEEVNS+LQTKFSQEPE
Sbjct: 1   MSGTVKKVTDVAFKASKNIDWDGMAKLLVSDEARKEFSSLRRAFEEVNSSLQTKFSQEPE 60

Query: 61  PIDWEYYRKGIGSRLVDMYKEAYDGIEIPKFVDTVTPQYKPKFDALLVELKEAEEKSLKE 120
           PIDWEYYRKGIGSRLVDMYKEAYD IE+PKFVDTVTPQYKPKFDALLVELKEAE KSLKE
Sbjct: 61  PIDWEYYRKGIGSRLVDMYKEAYDSIEVPKFVDTVTPQYKPKFDALLVELKEAEVKSLKE 120

Query: 121 SERLEKEIVEVQEMKKKISTMTADEYFEKHPELRKKFDDEIRNDYWGY 169
           SERLEKEIVEVQEMKKKISTMTADEYFEKHPELRKKFDDEIRNDYWGY
Sbjct: 121 SERLEKEIVEVQEMKKKISTMTADEYFEKHPELRKKFDDEIRNDYWGY 168

[Close]
BLAST of ClCG05G020840.1 vs. NCBI nr
Match: XP_022139222.1 (ATP synthase subunit d, mitochondrial [Momordica charantia])

HSP 1 Score: 320.5 bits (820), Expect = 8.8e-84
Identity = 161/168 (95.83%), Postives = 166/168 (98.81%), Query Frame = 0 

Query: 1   MSGTVKKVADVAFKASKNIDWDGMAKLLVSDEARKEFSSLRRAFEEVNSTLQTKFSQEPE 60
           MSGTVKKVADVAFKASKNIDWDGMAKLLVSDEARKEF++LRRAF+EVNSTLQTKFSQEPE
Sbjct: 1   MSGTVKKVADVAFKASKNIDWDGMAKLLVSDEARKEFATLRRAFDEVNSTLQTKFSQEPE 60

Query: 61  PIDWEYYRKGIGSRLVDMYKEAYDGIEIPKFVDTVTPQYKPKFDALLVELKEAEEKSLKE 120
           PIDWEYYRKGIGSRLVDMYKEAYD IE+PKFVDTVTPQYKPKFDALLVELKEAE KSLKE
Sbjct: 61  PIDWEYYRKGIGSRLVDMYKEAYDSIEVPKFVDTVTPQYKPKFDALLVELKEAEAKSLKE 120

Query: 121 SERLEKEIVEVQEMKKKISTMTADEYFEKHPELRKKFDDEIRNDYWGY 169
           SERLEKE+VEVQEMKKKISTMTADEYFEKHPELRKKFDDEIRNDYWGY
Sbjct: 121 SERLEKEVVEVQEMKKKISTMTADEYFEKHPELRKKFDDEIRNDYWGY 168

[Close]
BLAST of ClCG05G020840.1 vs. NCBI nr
Match: XP_004142418.1 (ATP synthase subunit d, mitochondrial [Cucumis sativus] >KGN52290.1 hypothetical protein Csa_007810 [Cucumis sativus])

HSP 1 Score: 319.7 bits (818), Expect = 1.5e-83
Identity = 162/168 (96.43%), Postives = 163/168 (97.02%), Query Frame = 0 

Query: 1   MSGTVKKVADVAFKASKNIDWDGMAKLLVSDEARKEFSSLRRAFEEVNSTLQTKFSQEPE 60
           MSGT+KKV DVAFKASKNIDWDGMAKLLVSDEARKEFSSLRRAFEEVNS LQTKFSQEPE
Sbjct: 1   MSGTIKKVTDVAFKASKNIDWDGMAKLLVSDEARKEFSSLRRAFEEVNSALQTKFSQEPE 60

Query: 61  PIDWEYYRKGIGSRLVDMYKEAYDGIEIPKFVDTVTPQYKPKFDALLVELKEAEEKSLKE 120
           PIDWEYYRKGIGSRLVDMYKEAYDGIEIPKFVDTVTPQYKPKFDALLVELKEAE KSLKE
Sbjct: 61  PIDWEYYRKGIGSRLVDMYKEAYDGIEIPKFVDTVTPQYKPKFDALLVELKEAEAKSLKE 120

Query: 121 SERLEKEIVEVQEMKKKISTMTADEYFEKHPELRKKFDDEIRNDYWGY 169
           SERLEKEI EVQEMKKKI TMTADEYFEKHPELRKKFDDEIRNDYWGY
Sbjct: 121 SERLEKEIAEVQEMKKKICTMTADEYFEKHPELRKKFDDEIRNDYWGY 168

[Close]
BLAST of ClCG05G020840.1 vs. NCBI nr
Match: XP_022966719.1 (ATP synthase subunit d, mitochondrial [Cucurbita maxima])

HSP 1 Score: 319.7 bits (818), Expect = 1.5e-83
Identity = 162/168 (96.43%), Postives = 165/168 (98.21%), Query Frame = 0 

Query: 1   MSGTVKKVADVAFKASKNIDWDGMAKLLVSDEARKEFSSLRRAFEEVNSTLQTKFSQEPE 60
           MSGTVKKV DVAFKASKNIDWDGMAKLLVSDEARKEFSSLRRAFEEVNS+LQTKFSQEPE
Sbjct: 1   MSGTVKKVTDVAFKASKNIDWDGMAKLLVSDEARKEFSSLRRAFEEVNSSLQTKFSQEPE 60

Query: 61  PIDWEYYRKGIGSRLVDMYKEAYDGIEIPKFVDTVTPQYKPKFDALLVELKEAEEKSLKE 120
           PIDWEYYRKGIGSRLVDMYKEAYD IE+PKFVDTVTPQYKPKFDALLVELKEAE KSLKE
Sbjct: 61  PIDWEYYRKGIGSRLVDMYKEAYDSIEVPKFVDTVTPQYKPKFDALLVELKEAEVKSLKE 120

Query: 121 SERLEKEIVEVQEMKKKISTMTADEYFEKHPELRKKFDDEIRNDYWGY 169
           SERLEKEIVEVQE+KKKISTMTADEYFEKHPELRKKFDDEIRNDYWGY
Sbjct: 121 SERLEKEIVEVQELKKKISTMTADEYFEKHPELRKKFDDEIRNDYWGY 168

[Close]
BLAST of ClCG05G020840.1 vs. NCBI nr
Match: XP_038893313.1 (ATP synthase subunit d, mitochondrial [Benincasa hispida])

HSP 1 Score: 319.3 bits (817), Expect = 2.0e-83
Identity = 162/168 (96.43%), Postives = 165/168 (98.21%), Query Frame = 0 

Query: 1   MSGTVKKVADVAFKASKNIDWDGMAKLLVSDEARKEFSSLRRAFEEVNSTLQTKFSQEPE 60
           MSGT+KKV +VAFKASKNIDWDGMAKLLVSDEARKEFSSLRRAFEEVNSTLQTKFSQEPE
Sbjct: 1   MSGTIKKVTNVAFKASKNIDWDGMAKLLVSDEARKEFSSLRRAFEEVNSTLQTKFSQEPE 60

Query: 61  PIDWEYYRKGIGSRLVDMYKEAYDGIEIPKFVDTVTPQYKPKFDALLVELKEAEEKSLKE 120
           PIDWEYYRKGIGSRLVDMYKEAYD IEIPKFVDTVTPQYKPKFDALLVELKEAE+KSLKE
Sbjct: 61  PIDWEYYRKGIGSRLVDMYKEAYDSIEIPKFVDTVTPQYKPKFDALLVELKEAEQKSLKE 120

Query: 121 SERLEKEIVEVQEMKKKISTMTADEYFEKHPELRKKFDDEIRNDYWGY 169
           SERLEKEIVEVQEMKKKISTMTADEYF KHPELRKKFDDEIRNDYWGY
Sbjct: 121 SERLEKEIVEVQEMKKKISTMTADEYFVKHPELRKKFDDEIRNDYWGY 168

[Close]
BLAST of ClCG05G020840.1 vs. ExPASy Swiss-Prot
Match: Q9FT52 (ATP synthase subunit d, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At3g52300 PE=1 SV=3)

HSP 1 Score: 283.9 bits (725), Expect = 1.2e-75
Identity = 139/168 (82.74%), Postives = 157/168 (93.45%), Query Frame = 0 

Query: 1   MSGTVKKVADVAFKASKNIDWDGMAKLLVSDEARKEFSSLRRAFEEVNSTLQTKFSQEPE 60
           MSG  KK+ADVAFKAS+ IDWDGMAK+LV+DEAR+EFS+LRRAF+EVN+ LQTKFSQEPE
Sbjct: 1   MSGAGKKIADVAFKASRTIDWDGMAKVLVTDEARREFSNLRRAFDEVNTQLQTKFSQEPE 60

Query: 61  PIDWEYYRKGIGSRLVDMYKEAYDGIEIPKFVDTVTPQYKPKFDALLVELKEAEEKSLKE 120
           PIDW+YYRKGIG+ +VD YKEAYD IEIPK+VD VTP+YKPKFDALLVELKEAE+KSLKE
Sbjct: 61  PIDWDYYRKGIGAGIVDKYKEAYDSIEIPKYVDKVTPEYKPKFDALLVELKEAEQKSLKE 120

Query: 121 SERLEKEIVEVQEMKKKISTMTADEYFEKHPELRKKFDDEIRNDYWGY 169
           SERLEKEI +VQE+ KK+STMTADEYFEKHPEL+KKFDDEIRND WGY
Sbjct: 121 SERLEKEIADVQEISKKLSTMTADEYFEKHPELKKKFDDEIRNDNWGY 168

[Close]
BLAST of ClCG05G020840.1 vs. ExPASy TrEMBL
Match: A0A6J1CDD8 (ATP synthase subunit d, mitochondrial OS=Momordica charantia OX=3673 GN=LOC111010189 PE=3 SV=1)

HSP 1 Score: 320.5 bits (820), Expect = 4.3e-84
Identity = 161/168 (95.83%), Postives = 166/168 (98.81%), Query Frame = 0 

Query: 1   MSGTVKKVADVAFKASKNIDWDGMAKLLVSDEARKEFSSLRRAFEEVNSTLQTKFSQEPE 60
           MSGTVKKVADVAFKASKNIDWDGMAKLLVSDEARKEF++LRRAF+EVNSTLQTKFSQEPE
Sbjct: 1   MSGTVKKVADVAFKASKNIDWDGMAKLLVSDEARKEFATLRRAFDEVNSTLQTKFSQEPE 60

Query: 61  PIDWEYYRKGIGSRLVDMYKEAYDGIEIPKFVDTVTPQYKPKFDALLVELKEAEEKSLKE 120
           PIDWEYYRKGIGSRLVDMYKEAYD IE+PKFVDTVTPQYKPKFDALLVELKEAE KSLKE
Sbjct: 61  PIDWEYYRKGIGSRLVDMYKEAYDSIEVPKFVDTVTPQYKPKFDALLVELKEAEAKSLKE 120

Query: 121 SERLEKEIVEVQEMKKKISTMTADEYFEKHPELRKKFDDEIRNDYWGY 169
           SERLEKE+VEVQEMKKKISTMTADEYFEKHPELRKKFDDEIRNDYWGY
Sbjct: 121 SERLEKEVVEVQEMKKKISTMTADEYFEKHPELRKKFDDEIRNDYWGY 168

[Close]
BLAST of ClCG05G020840.1 vs. ExPASy TrEMBL
Match: A0A6J1HUL8 (ATP synthase subunit d, mitochondrial OS=Cucurbita maxima OX=3661 GN=LOC111466347 PE=3 SV=1)

HSP 1 Score: 319.7 bits (818), Expect = 7.3e-84
Identity = 162/168 (96.43%), Postives = 165/168 (98.21%), Query Frame = 0 

Query: 1   MSGTVKKVADVAFKASKNIDWDGMAKLLVSDEARKEFSSLRRAFEEVNSTLQTKFSQEPE 60
           MSGTVKKV DVAFKASKNIDWDGMAKLLVSDEARKEFSSLRRAFEEVNS+LQTKFSQEPE
Sbjct: 1   MSGTVKKVTDVAFKASKNIDWDGMAKLLVSDEARKEFSSLRRAFEEVNSSLQTKFSQEPE 60

Query: 61  PIDWEYYRKGIGSRLVDMYKEAYDGIEIPKFVDTVTPQYKPKFDALLVELKEAEEKSLKE 120
           PIDWEYYRKGIGSRLVDMYKEAYD IE+PKFVDTVTPQYKPKFDALLVELKEAE KSLKE
Sbjct: 61  PIDWEYYRKGIGSRLVDMYKEAYDSIEVPKFVDTVTPQYKPKFDALLVELKEAEVKSLKE 120

Query: 121 SERLEKEIVEVQEMKKKISTMTADEYFEKHPELRKKFDDEIRNDYWGY 169
           SERLEKEIVEVQE+KKKISTMTADEYFEKHPELRKKFDDEIRNDYWGY
Sbjct: 121 SERLEKEIVEVQELKKKISTMTADEYFEKHPELRKKFDDEIRNDYWGY 168

[Close]
BLAST of ClCG05G020840.1 vs. ExPASy TrEMBL
Match: A0A0A0KRL4 (ATP synthase subunit d, mitochondrial OS=Cucumis sativus OX=3659 GN=Csa_5G623540 PE=3 SV=1)

HSP 1 Score: 319.7 bits (818), Expect = 7.3e-84
Identity = 162/168 (96.43%), Postives = 163/168 (97.02%), Query Frame = 0 

Query: 1   MSGTVKKVADVAFKASKNIDWDGMAKLLVSDEARKEFSSLRRAFEEVNSTLQTKFSQEPE 60
           MSGT+KKV DVAFKASKNIDWDGMAKLLVSDEARKEFSSLRRAFEEVNS LQTKFSQEPE
Sbjct: 1   MSGTIKKVTDVAFKASKNIDWDGMAKLLVSDEARKEFSSLRRAFEEVNSALQTKFSQEPE 60

Query: 61  PIDWEYYRKGIGSRLVDMYKEAYDGIEIPKFVDTVTPQYKPKFDALLVELKEAEEKSLKE 120
           PIDWEYYRKGIGSRLVDMYKEAYDGIEIPKFVDTVTPQYKPKFDALLVELKEAE KSLKE
Sbjct: 61  PIDWEYYRKGIGSRLVDMYKEAYDGIEIPKFVDTVTPQYKPKFDALLVELKEAEAKSLKE 120

Query: 121 SERLEKEIVEVQEMKKKISTMTADEYFEKHPELRKKFDDEIRNDYWGY 169
           SERLEKEI EVQEMKKKI TMTADEYFEKHPELRKKFDDEIRNDYWGY
Sbjct: 121 SERLEKEIAEVQEMKKKICTMTADEYFEKHPELRKKFDDEIRNDYWGY 168

[Close]
BLAST of ClCG05G020840.1 vs. ExPASy TrEMBL
Match: A0A6J1G072 (ATP synthase subunit d, mitochondrial OS=Cucurbita moschata OX=3662 GN=LOC111449482 PE=3 SV=1)

HSP 1 Score: 318.2 bits (814), Expect = 2.1e-83
Identity = 161/168 (95.83%), Postives = 164/168 (97.62%), Query Frame = 0 

Query: 1   MSGTVKKVADVAFKASKNIDWDGMAKLLVSDEARKEFSSLRRAFEEVNSTLQTKFSQEPE 60
           MSGTVKKV DVAFKASKNIDWDGMAKLLVSDEARKEFSSLRRAFEEVNS LQTKFSQEPE
Sbjct: 1   MSGTVKKVTDVAFKASKNIDWDGMAKLLVSDEARKEFSSLRRAFEEVNSALQTKFSQEPE 60

Query: 61  PIDWEYYRKGIGSRLVDMYKEAYDGIEIPKFVDTVTPQYKPKFDALLVELKEAEEKSLKE 120
           PIDWEYYRKGIGSRLVDMYKEAYD IE+PKFVDTVTPQYKPKFD+LLVELKEAE KSLKE
Sbjct: 61  PIDWEYYRKGIGSRLVDMYKEAYDSIEVPKFVDTVTPQYKPKFDSLLVELKEAEVKSLKE 120

Query: 121 SERLEKEIVEVQEMKKKISTMTADEYFEKHPELRKKFDDEIRNDYWGY 169
           SERLEKEIVEVQE+KKKISTMTADEYFEKHPELRKKFDDEIRNDYWGY
Sbjct: 121 SERLEKEIVEVQELKKKISTMTADEYFEKHPELRKKFDDEIRNDYWGY 168

[Close]
BLAST of ClCG05G020840.1 vs. ExPASy TrEMBL
Match: A0A5D3CDC0 (ATP synthase subunit d, mitochondrial OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold475G002870 PE=3 SV=1)

HSP 1 Score: 317.0 bits (811), Expect = 4.7e-83
Identity = 161/168 (95.83%), Postives = 163/168 (97.02%), Query Frame = 0 

Query: 1   MSGTVKKVADVAFKASKNIDWDGMAKLLVSDEARKEFSSLRRAFEEVNSTLQTKFSQEPE 60
           MSGTVKKV DVAFKASKNIDWDGMAKLLVSDEARKEFSSLRRAFEEVNS LQTKFSQEPE
Sbjct: 1   MSGTVKKVTDVAFKASKNIDWDGMAKLLVSDEARKEFSSLRRAFEEVNSALQTKFSQEPE 60

Query: 61  PIDWEYYRKGIGSRLVDMYKEAYDGIEIPKFVDTVTPQYKPKFDALLVELKEAEEKSLKE 120
           PIDWEYYRKGIGSRLVDMYKEAYD IEIPKFVDTVTPQYKPKFDALLVELKEAEEKSLKE
Sbjct: 61  PIDWEYYRKGIGSRLVDMYKEAYDSIEIPKFVDTVTPQYKPKFDALLVELKEAEEKSLKE 120

Query: 121 SERLEKEIVEVQEMKKKISTMTADEYFEKHPELRKKFDDEIRNDYWGY 169
           SERLEKEI EV+EMK+KI TMTADEYFEKHPELRKKFDDEIRNDYWGY
Sbjct: 121 SERLEKEIAEVREMKQKICTMTADEYFEKHPELRKKFDDEIRNDYWGY 168

[Close]
BLAST of ClCG05G020840.1 vs. TAIR 10
Match: AT3G52300.1 (ATP synthase D chain, mitochondrial )

HSP 1 Score: 283.9 bits (725), Expect = 8.5e-77
Identity = 139/168 (82.74%), Postives = 157/168 (93.45%), Query Frame = 0 

Query: 1   MSGTVKKVADVAFKASKNIDWDGMAKLLVSDEARKEFSSLRRAFEEVNSTLQTKFSQEPE 60
           MSG  KK+ADVAFKAS+ IDWDGMAK+LV+DEAR+EFS+LRRAF+EVN+ LQTKFSQEPE
Sbjct: 1   MSGAGKKIADVAFKASRTIDWDGMAKVLVTDEARREFSNLRRAFDEVNTQLQTKFSQEPE 60

Query: 61  PIDWEYYRKGIGSRLVDMYKEAYDGIEIPKFVDTVTPQYKPKFDALLVELKEAEEKSLKE 120
           PIDW+YYRKGIG+ +VD YKEAYD IEIPK+VD VTP+YKPKFDALLVELKEAE+KSLKE
Sbjct: 61  PIDWDYYRKGIGAGIVDKYKEAYDSIEIPKYVDKVTPEYKPKFDALLVELKEAEQKSLKE 120

Query: 121 SERLEKEIVEVQEMKKKISTMTADEYFEKHPELRKKFDDEIRNDYWGY 169
           SERLEKEI +VQE+ KK+STMTADEYFEKHPEL+KKFDDEIRND WGY
Sbjct: 121 SERLEKEIADVQEISKKLSTMTADEYFEKHPELKKKFDDEIRNDNWGY 168

[Close]
BLAST of ClCG05G020840.1 vs. TAIR 10
Match: AT3G52300.2 (ATP synthase D chain, mitochondrial )

HSP 1 Score: 184.5 bits (467), Expect = 7.0e-47
Identity = 85/108 (78.70%), Postives = 100/108 (92.59%), Query Frame = 0 

Query: 1   MSGTVKKVADVAFKASKNIDWDGMAKLLVSDEARKEFSSLRRAFEEVNSTLQTKFSQEPE 60
           MSG  KK+ADVAFKAS+ IDWDGMAK+LV+DEAR+EFS+LRRAF+EVN+ LQTKFSQEPE
Sbjct: 1   MSGAGKKIADVAFKASRTIDWDGMAKVLVTDEARREFSNLRRAFDEVNTQLQTKFSQEPE 60

Query: 61  PIDWEYYRKGIGSRLVDMYKEAYDGIEIPKFVDTVTPQYKPKFDALLV 109
           PIDW+YYRKGIG+ +VD YKEAYD IEIPK+VD VTP+YKPKFDAL++
Sbjct: 61  PIDWDYYRKGIGAGIVDKYKEAYDSIEIPKYVDKVTPEYKPKFDALVI 108

The following BLAST results are available for this feature:
BLAST of ClCG05G020840.1 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_023541261.16.8e-8497.02ATP synthase subunit d, mitochondrial [Cucurbita pepo subsp. pepo][more]
XP_022139222.18.8e-8495.83ATP synthase subunit d, mitochondrial [Momordica charantia][more]
XP_004142418.11.5e-8396.43ATP synthase subunit d, mitochondrial [Cucumis sativus] >KGN52290.1 hypothetical... [more]
XP_022966719.11.5e-8396.43ATP synthase subunit d, mitochondrial [Cucurbita maxima][more]
XP_038893313.12.0e-8396.43ATP synthase subunit d, mitochondrial [Benincasa hispida][more]
BLAST of ClCG05G020840.1 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9FT521.2e-7582.74ATP synthase subunit d, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At3g523... [more]
BLAST of ClCG05G020840.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1CDD84.3e-8495.83ATP synthase subunit d, mitochondrial OS=Momordica charantia OX=3673 GN=LOC11101... [more]
A0A6J1HUL87.3e-8496.43ATP synthase subunit d, mitochondrial OS=Cucurbita maxima OX=3661 GN=LOC11146634... [more]
A0A0A0KRL47.3e-8496.43ATP synthase subunit d, mitochondrial OS=Cucumis sativus OX=3659 GN=Csa_5G623540... [more]
A0A6J1G0722.1e-8395.83ATP synthase subunit d, mitochondrial OS=Cucurbita moschata OX=3662 GN=LOC111449... [more]
A0A5D3CDC04.7e-8395.83ATP synthase subunit d, mitochondrial OS=Cucumis melo var. makuwa OX=1194695 GN=... [more]
BLAST of ClCG05G020840.1 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G52300.18.5e-7782.74ATP synthase D chain, mitochondrial [more]
AT3G52300.27.0e-4778.70ATP synthase D chain, mitochondrial [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 107..141
NoneNo IPR availablePANTHERPTHR12700:SF18ATP SYNTHASE SUBUNIT D, MITOCHONDRIALcoord: 1..168
IPR008689ATP synthase, F0 complex, subunit D, mitochondrialPFAMPF05873Mt_ATP-synt_Dcoord: 15..166
e-value: 8.5E-19
score: 67.9
IPR008689ATP synthase, F0 complex, subunit D, mitochondrialPIRSFPIRSF005514Mitoh_ATP-synt_Dcoord: 9..168
e-value: 3.0E-39
score: 132.3
IPR008689ATP synthase, F0 complex, subunit D, mitochondrialPANTHERPTHR12700ATP SYNTHASE SUBUNIT D, MITOCHONDRIALcoord: 1..168
IPR036228ATP synthase, F0 complex, subunit D superfamily, mitochondrialGENE3D6.10.280.70coord: 14..141
e-value: 5.2E-35
score: 122.1
IPR036228ATP synthase, F0 complex, subunit D superfamily, mitochondrialSUPERFAMILY161065ATP synthase D chain-likecoord: 15..131

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
ClCG05G020840ClCG05G020840gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
ClCG05G020840.1-exonClCG05G020840.1-exon-CG_Chr05:32858010..32858282exon
ClCG05G020840.1-exonClCG05G020840.1-exon-CG_Chr05:32859140..32859221exon
ClCG05G020840.1-exonClCG05G020840.1-exon-CG_Chr05:32859845..32859909exon
ClCG05G020840.1-exonClCG05G020840.1-exon-CG_Chr05:32859989..32860075exon
ClCG05G020840.1-exonClCG05G020840.1-exon-CG_Chr05:32860152..32860567exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
ClCG05G020840.1-five_prime_utrClCG05G020840.1-five_prime_utr-CG_Chr05:32858010..32858111five_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
ClCG05G020840.1-cdsClCG05G020840.1-cds-CG_Chr05:32858112..32858282CDS
ClCG05G020840.1-cdsClCG05G020840.1-cds-CG_Chr05:32859140..32859221CDS
ClCG05G020840.1-cdsClCG05G020840.1-cds-CG_Chr05:32859845..32859909CDS
ClCG05G020840.1-cdsClCG05G020840.1-cds-CG_Chr05:32859989..32860075CDS
ClCG05G020840.1-cdsClCG05G020840.1-cds-CG_Chr05:32860152..32860253CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
ClCG05G020840.1-three_prime_utrClCG05G020840.1-three_prime_utr-CG_Chr05:32860254..32860567three_prime_UTR


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
ClCG05G020840.1ClCG05G020840.1-proteinpolypeptide


GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015986 ATP synthesis coupled proton transport
cellular_component GO:0000276 mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)
cellular_component GO:0000274 mitochondrial proton-transporting ATP synthase, stator stalk
molecular_function GO:0015078 proton transmembrane transporter activity