ClCG02G008710.2 (mRNA) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG02G008710.2
Type	mRNA
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	Sodium Bile acid symporter family
Location	CG_Chr02: 11758978 .. 11761434 (+)
Sequence length	786
RNA-Seq Expression	ClCG02G008710.2
Synteny	ClCG02G008710.2

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGCTATTGTCCATTATTTTTCTCCCTTCACCCTCTTCACATCAATTTGTATTTAATTTTAGGTTGGTTTGAAAGTTTGATGGACTTGTACGTGGGATGGGATTGGAAGATTTTAAAGATAAAATGACAACCAAAATAGAAAAAACAATTTTAACTAAACCGAGCCAACTTGTTCGGTTAAGAAACTAAAACGAGAAGTTTCAATTTTTGCCGATTTGTAAACACCCTTAATTACAGTAATTATTTTATAGTTACGTTCCAATAGTCCAGCTGTCAAAATTAGAGGAAAGTTGCTGACTTTCATTCCCATTCAATAGTTTTATCCCAATCAATCCCCATGCGGGAGTATAGTATTGAGGCTCTACTAGAAATTTTCGGATAGAATAGTGTGCTCACTGTCACTCCTTGCTCAACAGTCCTATGGCGTTGGTGGGAACCAAATCCCTACACAGTCTTCTCGTTTCGTCTCATTGGAGCAATCCACCGGCCTTTTGTTTCCAAATTTCTCGTTTCTCCTCTAATGGCGCACTCTTGCGTACCAGTTCTCTCGCTTTGAATCGTAAACGCCAAATTTATAGTCCCATCAGAGCCTCCGGATTGCCCGATAAGGTTGTGTTCTCTCCCTTTGGATCTTTGTCAATGTTGAAACTCATACATCGATTTCTTTTCCCTGCATGTAATGGCTTTAAGACGAGATTTCATCCCTGTGATTCAGAAAGACGATGGTGGAAGGATAAACGAACCTGCCGGTGTTTCGGGTTCGGAAAATAGGGTTAATTGGTTCAAGGCATTATCGACTTTTGCAAATAATAATTTTCTTCCTCTAGGTAAGTTAAAGACTTATTGTTTCTTATTTCCATTAAATTGAAATTATTGTCAGCTTATCGCACTTTTGTTCCTCAATTCAATATGTAGCTCTTGTCACTGGTGTAGCAGTAGGAGTTGCGAATCCAAGTCTTGGATGTCTTGCTGATAGGTATTATCTCTCAAAGTTAAGCACATTCGGTATATTTGTCGTCTCAGGTTAGGAACCGTTACTAACTATCCACATAAAATGTAGGTTTTGTTCTGTAATCCGTTATTTTATACATGATGTGCTTACGCAGGGTTGACATTGCGTACTTCAGAAATTAGTGCTTCATTGGAGGCATGGCCTGTTGCAGTTTATGGGCTTGTATGATTCTCATTTATAATCTTCCATCATATTTTTTTGCTTGTAAGTTCATTCTTCGAGTTTAGTCGTTATTTTCACATTGTTTATAATTATGTTTTTCCCCCTTCATAATTTTTAATTTTTTTTTTTTTTTTTTTTTTTTTGAAACTGTGGTTTCATTTTTGTATGTGAAAGCCTATGTACAAATTTTCTATTATTGGCAAAGTGACTTTCCATGCATTAAAATTTATTTTGTTATCTGTTTCATCATTTCCTGATGCTCATGTATTTTGAGTGATAATGTGATTTTTGTTACCTGACTTATTATTATTATAGAATTTTATTTATTCATCCTGCTTTTAGCATTTGTTTAACTAGTTTGAAGAGGTTTTCTACAATGCAGTTGGATGTTTAAGTTTTGTACACTGAATTCGGATGCTTGAGTTGCAGATGCTTTTTTCTCTGTGTTGACCTTTTGTAGTGGGGTGTGATGGTTGCTCTTTTAGTAACTAAATGAAGGGATCAAAGAGATTATTACAGATCTTGTTCACTGAGAAATAACTCAAAATTGGATCTTGGTCTTTCTGTGATTGTTCCTTTTTTTAGTAATAAGGATGTTTTCTTGTCTCTCATTTCTTTTACAAATAAATTGAATATCCTTGTTCATGGATAGGTTTTATGGCATACTCAATGCATGGGTATCATTTGCACTGTTGTACTAATTTCAGTATATTTGTTGAGCTTGTATTCACTCTCTCTCTCTATTGTTTTTTTGTCAGGCTTCAATTCTTTTGCTTACTCCATACTTTTCCAGGCTGATATTGCTAATTCATCTTCAACCTCAAGAATTTGTAACAGGTTTCTTTATGAAATTATTTTTAGCCATTGAATGACAGGTTAGAAATTTCATCATATGTCCCTTATACAAAAAAGAGGACCAGTTAGCCATTCAGATTTTCTTGGTCTATCTTCTGCAAAAATTGGAGTTGCTAGCTTCATGATGCAAGTGTCATACTTTTAAACTATCATTTGTTGTGTTTAGAGAAGAAAAATTAGAACTATTACATGCAATTTTAAGACGAGATATAATTTGATAATACTTGCATTAGATGAAAATTCTAAATAGGCTTCTCCTAGAACATGAACATATATTGATATAAGATAAATTTGGAATTGACAATCATAGTTTTATCAAGAGTTTGGTCTAATAAAGATTGGTCAGTGGCCATATTTACTTTACTTAGTGCTCCAGTTAGCCTTAAGGCCCTTAACATTCAATTGACCGTTTGTATGGATAATTGA

mRNA sequence

ATGTGCTATTGTCCATTATTTTTCTCCCTTCACCCTCTTCACATCAATTTGTATTTAATTTTAGGTTGGTTTGAAAGTTTGATGGACTTTCCTATGGCGTTGGTGGGAACCAAATCCCTACACAGTCTTCTCGTTTCGTCTCATTGGAGCAATCCACCGGCCTTTTGTTTCCAAATTTCTCGTTTCTCCTCTAATGGCGCACTCTTGCGTACCAGTTCTCTCGCTTTGAATCGTAAACGCCAAATTTATAGTCCCATCAGAGCCTCCGGATTGCCCGATAAGGTTAAAGACGATGGTGGAAGGATAAACGAACCTGCCGGTGTTTCGGGTTCGGAAAATAGGGTTAATTGGTTCAAGGCATTATCGACTTTTGCAAATAATAATTTTCTTCCTCTAGGTAAGTTAAAGACTTATTCTCTTGTCACTGGTGTAGCAGTAGGAGTTGCGAATCCAAGTCTTGGATGTCTTGCTGATAGGTATTATCTCTCAAAGTTAAGCACATTCGGTATATTTGTCGTCTCAGGGTTGACATTGCGTACTTCAGAAATTAGTGCTTCATTGGAGGCATGGCCTGTTGCAGTTTATGGGCTTGCTTCAATTCTTTTGCTTACTCCATACTTTTCCAGGCTGATATTGCTAATTCATCTTCAACCTCAAGAATTTGTAACAGTTTTATCAAGAGTTTGGTCTAATAAAGATTGGTCAGTGGCCATATTTACTTTACTTAGTGCTCCAGTTAGCCTTAAGGCCCTTAACATTCAATTGACCGTTTGTATGGATAATTGA

Coding sequence (CDS)

ATGTGCTATTGTCCATTATTTTTCTCCCTTCACCCTCTTCACATCAATTTGTATTTAATTTTAGGTTGGTTTGAAAGTTTGATGGACTTTCCTATGGCGTTGGTGGGAACCAAATCCCTACACAGTCTTCTCGTTTCGTCTCATTGGAGCAATCCACCGGCCTTTTGTTTCCAAATTTCTCGTTTCTCCTCTAATGGCGCACTCTTGCGTACCAGTTCTCTCGCTTTGAATCGTAAACGCCAAATTTATAGTCCCATCAGAGCCTCCGGATTGCCCGATAAGGTTAAAGACGATGGTGGAAGGATAAACGAACCTGCCGGTGTTTCGGGTTCGGAAAATAGGGTTAATTGGTTCAAGGCATTATCGACTTTTGCAAATAATAATTTTCTTCCTCTAGGTAAGTTAAAGACTTATTCTCTTGTCACTGGTGTAGCAGTAGGAGTTGCGAATCCAAGTCTTGGATGTCTTGCTGATAGGTATTATCTCTCAAAGTTAAGCACATTCGGTATATTTGTCGTCTCAGGGTTGACATTGCGTACTTCAGAAATTAGTGCTTCATTGGAGGCATGGCCTGTTGCAGTTTATGGGCTTGCTTCAATTCTTTTGCTTACTCCATACTTTTCCAGGCTGATATTGCTAATTCATCTTCAACCTCAAGAATTTGTAACAGTTTTATCAAGAGTTTGGTCTAATAAAGATTGGTCAGTGGCCATATTTACTTTACTTAGTGCTCCAGTTAGCCTTAAGGCCCTTAACATTCAATTGACCGTTTGTATGGATAATTGA

Protein sequence

MCYCPLFFSLHPLHINLYLILGWFESLMDFPMALVGTKSLHSLLVSSHWSNPPAFCFQISRFSSNGALLRTSSLALNRKRQIYSPIRASGLPDKVKDDGGRINEPAGVSGSENRVNWFKALSTFANNNFLPLGKLKTYSLVTGVAVGVANPSLGCLADRYYLSKLSTFGIFVVSGLTLRTSEISASLEAWPVAVYGLASILLLTPYFSRLILLIHLQPQEFVTVLSRVWSNKDWSVAIFTLLSAPVSLKALNIQLTVCMDN

Homology

[Close]

BLAST of ClCG02G008710.2 vs. NCBI nr
Match: XP_038900991.1 (probable sodium/metabolite cotransporter BASS4, chloroplastic [Benincasa hispida])

HSP 1 Score: 320.5 bits (820), Expect = 1.4e-83
Identity = 171/195 (87.69%), Postives = 178/195 (91.28%), Query Frame = 0


Query: 32  MALVGTKSLHSLLVSSHWSNPPAFCFQISRFSSNGALLRTSSLALNRKRQIYSPIRASGL 91
           MALVGTKSLHSLLVSSH SNPPAFC QISR+SSNGA L +SSLALNRKRQIYSPIRA GL
Sbjct: 1   MALVGTKSLHSLLVSSHRSNPPAFCLQISRYSSNGAPLGSSSLALNRKRQIYSPIRACGL 60

Query: 92  PDKVKDDGGRINEPAGVSGSENRVNWFKALSTFANNNFLPLGKLKTYSLVTGVAVGVANP 151
           PDK KDDGGRINEPA VSGSENRV WF+ALSTFANNNFLPL      +LVTGVAVGVANP
Sbjct: 61  PDK-KDDGGRINEPASVSGSENRVTWFEALSTFANNNFLPL------ALVTGVAVGVANP 120

Query: 152 SLGCLADRYYLSKLSTFGIFVVSGLTLRTSEISASLEAWPVAVYGLASILLLTPYFSRLI 211
           SLGCLADRYYLSK STFGIFV+SGLTLRTSEISAS+EAWPVAVYGLASILLLTPYFSRLI
Sbjct: 121 SLGCLADRYYLSKFSTFGIFVISGLTLRTSEISASVEAWPVAVYGLASILLLTPYFSRLI 180

Query: 212 LLIHLQPQEFVTVLS 227
           L IHLQPQEFVT L+
Sbjct: 181 LQIHLQPQEFVTGLA 188

[Close]

BLAST of ClCG02G008710.2 vs. NCBI nr
Match: XP_004151888.1 (probable sodium/metabolite cotransporter BASS4, chloroplastic [Cucumis sativus] >KGN63253.1 hypothetical protein Csa_022589 [Cucumis sativus])

HSP 1 Score: 297.7 bits (761), Expect = 9.5e-77
Identity = 160/195 (82.05%), Postives = 170/195 (87.18%), Query Frame = 0


Query: 32  MALVGTKSLHSLLVSSHWSNPPAFCFQISRFSSNGALLRTSSLALNRKRQIYSPIRASGL 91
           MA VGTKSL+SLLV SH SNPPAF FQIS FSSN ALL ++SLALNRKR+ Y PIRA GL
Sbjct: 3   MAFVGTKSLYSLLVLSHRSNPPAFSFQISHFSSNVALLPSTSLALNRKRRSYCPIRACGL 62

Query: 92  PDKVKDDGGRINEPAGVSGSENRVNWFKALSTFANNNFLPLGKLKTYSLVTGVAVGVANP 151
           PDK KDDGGRINEP  VSGSE RV+WF+ LSTFANNNFLPL      +LVTGVAVGVANP
Sbjct: 63  PDK-KDDGGRINEPTSVSGSEKRVSWFETLSTFANNNFLPL------ALVTGVAVGVANP 122

Query: 152 SLGCLADRYYLSKLSTFGIFVVSGLTLRTSEISASLEAWPVAVYGLASILLLTPYFSRLI 211
           SLGCLADRYYLSK STFGIFV+SGLTLRTSEISAS+EAWPVAVYGL SILLLTPYFSRLI
Sbjct: 123 SLGCLADRYYLSKFSTFGIFVISGLTLRTSEISASVEAWPVAVYGLVSILLLTPYFSRLI 182

Query: 212 LLIHLQPQEFVTVLS 227
           L IHLQPQEFVT L+
Sbjct: 183 LQIHLQPQEFVTGLA 190

[Close]

BLAST of ClCG02G008710.2 vs. NCBI nr
Match: XP_008455871.1 (PREDICTED: probable sodium/metabolite cotransporter BASS4, chloroplastic isoform X1 [Cucumis melo] >TYK24216.1 putative sodium/metabolite cotransporter BASS4 [Cucumis melo var. makuwa])

HSP 1 Score: 292.4 bits (747), Expect = 4.0e-75
Identity = 159/195 (81.54%), Postives = 168/195 (86.15%), Query Frame = 0


Query: 32  MALVGTKSLHSLLVSSHWSNPPAFCFQISRFSSNGALLRTSSLALNRKRQIYSPIRASGL 91
           MA VGTKSL    VSSH SNPPAF FQIS FS N ALLR++SLALNRKRQ YSPIRA GL
Sbjct: 3   MAFVGTKSLFH--VSSHRSNPPAFSFQISHFSYNVALLRSTSLALNRKRQSYSPIRACGL 62

Query: 92  PDKVKDDGGRINEPAGVSGSENRVNWFKALSTFANNNFLPLGKLKTYSLVTGVAVGVANP 151
           PDK KDDGGRINEPA VSGSENRV+W + LSTFANNNFLPL      +LVTGVAVG+ANP
Sbjct: 63  PDK-KDDGGRINEPASVSGSENRVSWLETLSTFANNNFLPL------ALVTGVAVGIANP 122

Query: 152 SLGCLADRYYLSKLSTFGIFVVSGLTLRTSEISASLEAWPVAVYGLASILLLTPYFSRLI 211
           SLGCLADRYYLSK STFGIFV+SGLTLRTSEISAS+EAWPVAVYGL SILLLTPYFSRLI
Sbjct: 123 SLGCLADRYYLSKFSTFGIFVISGLTLRTSEISASVEAWPVAVYGLVSILLLTPYFSRLI 182

Query: 212 LLIHLQPQEFVTVLS 227
           L IHL PQEFVT L+
Sbjct: 183 LQIHLHPQEFVTGLA 188

[Close]

BLAST of ClCG02G008710.2 vs. NCBI nr
Match: XP_008455872.1 (PREDICTED: probable sodium/metabolite cotransporter BASS4, chloroplastic isoform X2 [Cucumis melo])

HSP 1 Score: 292.4 bits (747), Expect = 4.0e-75
Identity = 159/195 (81.54%), Postives = 168/195 (86.15%), Query Frame = 0


Query: 32  MALVGTKSLHSLLVSSHWSNPPAFCFQISRFSSNGALLRTSSLALNRKRQIYSPIRASGL 91
           MA VGTKSL    VSSH SNPPAF FQIS FS N ALLR++SLALNRKRQ YSPIRA GL
Sbjct: 3   MAFVGTKSLFH--VSSHRSNPPAFSFQISHFSYNVALLRSTSLALNRKRQSYSPIRACGL 62

Query: 92  PDKVKDDGGRINEPAGVSGSENRVNWFKALSTFANNNFLPLGKLKTYSLVTGVAVGVANP 151
           PDK KDDGGRINEPA VSGSENRV+W + LSTFANNNFLPL      +LVTGVAVG+ANP
Sbjct: 63  PDK-KDDGGRINEPASVSGSENRVSWLETLSTFANNNFLPL------ALVTGVAVGIANP 122

Query: 152 SLGCLADRYYLSKLSTFGIFVVSGLTLRTSEISASLEAWPVAVYGLASILLLTPYFSRLI 211
           SLGCLADRYYLSK STFGIFV+SGLTLRTSEISAS+EAWPVAVYGL SILLLTPYFSRLI
Sbjct: 123 SLGCLADRYYLSKFSTFGIFVISGLTLRTSEISASVEAWPVAVYGLVSILLLTPYFSRLI 182

Query: 212 LLIHLQPQEFVTVLS 227
           L IHL PQEFVT L+
Sbjct: 183 LQIHLHPQEFVTGLA 188

[Close]

BLAST of ClCG02G008710.2 vs. NCBI nr
Match: KAA0040654.1 (putative sodium/metabolite cotransporter BASS4 [Cucumis melo var. makuwa])

HSP 1 Score: 292.4 bits (747), Expect = 4.0e-75
Identity = 159/195 (81.54%), Postives = 168/195 (86.15%), Query Frame = 0


Query: 32  MALVGTKSLHSLLVSSHWSNPPAFCFQISRFSSNGALLRTSSLALNRKRQIYSPIRASGL 91
           MA VGTKSL    VSSH SNPPAF FQIS FS N ALLR++SLALNRKRQ YSPIRA GL
Sbjct: 3   MAFVGTKSLFH--VSSHRSNPPAFSFQISHFSYNVALLRSTSLALNRKRQSYSPIRACGL 62

Query: 92  PDKVKDDGGRINEPAGVSGSENRVNWFKALSTFANNNFLPLGKLKTYSLVTGVAVGVANP 151
           PDK KDDGGRINEPA VSGSENRV+W + LSTFANNNFLPL      +LVTGVAVG+ANP
Sbjct: 63  PDK-KDDGGRINEPASVSGSENRVSWLETLSTFANNNFLPL------ALVTGVAVGIANP 122

Query: 152 SLGCLADRYYLSKLSTFGIFVVSGLTLRTSEISASLEAWPVAVYGLASILLLTPYFSRLI 211
           SLGCLADRYYLSK STFGIFV+SGLTLRTSEISAS+EAWPVAVYGL SILLLTPYFSRLI
Sbjct: 123 SLGCLADRYYLSKFSTFGIFVISGLTLRTSEISASVEAWPVAVYGLVSILLLTPYFSRLI 182

Query: 212 LLIHLQPQEFVTVLS 227
           L IHL PQEFVT L+
Sbjct: 183 LQIHLHPQEFVTGLA 188

[Close]

BLAST of ClCG02G008710.2 vs. ExPASy Swiss-Prot
Match: F4IZC4 (Probable sodium/metabolite cotransporter BASS4, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=BASS4 PE=3 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 2.0e-29
Identity = 67/119 (56.30%), Postives = 91/119 (76.47%), Query Frame = 0


Query: 107 GVSGSENRVNWFKALSTFANNNFLPLGKLKTYSLVTGVAVGVANPSLGCLADRYYLSKLS 166
           G+S S  R+ + K L +FA++NFLPL      +LV+GV +G ANP+LGCLAD+Y  +K+S
Sbjct: 87  GISASAQRLYFGKELLSFASDNFLPL------ALVSGVGLGFANPTLGCLADKYSFTKIS 146

Query: 167 TFGIFVVSGLTLRTSEISASLEAWPVAVYGLASILLLTPYFSRLILLIHLQPQEFVTVL 226
           T GIF++SGLTLRT  I A+++ WP+ ++GL SILLLTP FSRLI+L+ LQP+E VT L
Sbjct: 147 TCGIFIISGLTLRTEAIGAAVKGWPLGLFGLISILLLTPSFSRLIMLVQLQPRELVTGL 199

[Close]

BLAST of ClCG02G008710.2 vs. ExPASy Swiss-Prot
Match: B8AJ09 (Probable sodium/metabolite cotransporter BASS4, chloroplastic OS=Oryza sativa subsp. indica OX=39946 GN=BASS4 PE=3 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 6.1e-26
Identity = 69/151 (45.70%), Postives = 94/151 (62.25%), Query Frame = 0


Query: 76  LNRKRQIYSPIRASGLPDKVKDDGGRINEPAGVSGSENRVNWFKALSTFANNNFLPLGKL 135
           L R R + +   A+G       DG +   PA  S S        AL  FA +NFLPL   
Sbjct: 48  LRRLRPLRAAAAAAGGASPDGADGAKRPAPAAASSSLG-----AALVGFARSNFLPL--- 107

Query: 136 KTYSLVTGVAVGVANPSLGCLADRYYLSKLSTFGIFVVSGLTLRTSEISASLEAWPVAVY 195
              +L+ G+A+ + +P+LGCLA +Y LSK STFGIF++SGLTLRT E+ A+LEAWP  ++
Sbjct: 108 ---ALIAGIALALMDPTLGCLAHKYSLSKYSTFGIFLISGLTLRTKELGAALEAWPAGLF 167

Query: 196 GLASILLLTPYFSRLILLIHLQPQEFVTVLS 227
           GLASILL TP+ ++ I+ I   P EF+T L+
Sbjct: 168 GLASILLFTPFLAQFIMQIKFFPHEFITGLA 187

[Close]

BLAST of ClCG02G008710.2 vs. ExPASy Swiss-Prot
Match: Q6ESG1 (Probable sodium/metabolite cotransporter BASS4, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=BASS4 PE=3 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 6.1e-26
Identity = 69/151 (45.70%), Postives = 94/151 (62.25%), Query Frame = 0


Query: 76  LNRKRQIYSPIRASGLPDKVKDDGGRINEPAGVSGSENRVNWFKALSTFANNNFLPLGKL 135
           L R R + +   A+G       DG +   PA  S S        AL  FA +NFLPL   
Sbjct: 48  LRRLRPLRAAAAAAGGASPDGADGAKRPAPAAASSSLG-----AALVGFARSNFLPL--- 107

Query: 136 KTYSLVTGVAVGVANPSLGCLADRYYLSKLSTFGIFVVSGLTLRTSEISASLEAWPVAVY 195
              +L+ G+A+ + +P+LGCLA +Y LSK STFGIF++SGLTLRT E+ A+LEAWP  ++
Sbjct: 108 ---ALIAGIALALMDPTLGCLAHKYSLSKYSTFGIFLISGLTLRTKELGAALEAWPAGLF 167

Query: 196 GLASILLLTPYFSRLILLIHLQPQEFVTVLS 227
           GLASILL TP+ ++ I+ I   P EF+T L+
Sbjct: 168 GLASILLFTPFLAQFIMQIKFFPHEFITGLA 187

[Close]

BLAST of ClCG02G008710.2 vs. ExPASy TrEMBL
Match: A0A0A0LN64 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G418880 PE=4 SV=1)

HSP 1 Score: 297.7 bits (761), Expect = 4.6e-77
Identity = 160/195 (82.05%), Postives = 170/195 (87.18%), Query Frame = 0


Query: 32  MALVGTKSLHSLLVSSHWSNPPAFCFQISRFSSNGALLRTSSLALNRKRQIYSPIRASGL 91
           MA VGTKSL+SLLV SH SNPPAF FQIS FSSN ALL ++SLALNRKR+ Y PIRA GL
Sbjct: 3   MAFVGTKSLYSLLVLSHRSNPPAFSFQISHFSSNVALLPSTSLALNRKRRSYCPIRACGL 62

Query: 92  PDKVKDDGGRINEPAGVSGSENRVNWFKALSTFANNNFLPLGKLKTYSLVTGVAVGVANP 151
           PDK KDDGGRINEP  VSGSE RV+WF+ LSTFANNNFLPL      +LVTGVAVGVANP
Sbjct: 63  PDK-KDDGGRINEPTSVSGSEKRVSWFETLSTFANNNFLPL------ALVTGVAVGVANP 122

Query: 152 SLGCLADRYYLSKLSTFGIFVVSGLTLRTSEISASLEAWPVAVYGLASILLLTPYFSRLI 211
           SLGCLADRYYLSK STFGIFV+SGLTLRTSEISAS+EAWPVAVYGL SILLLTPYFSRLI
Sbjct: 123 SLGCLADRYYLSKFSTFGIFVISGLTLRTSEISASVEAWPVAVYGLVSILLLTPYFSRLI 182

Query: 212 LLIHLQPQEFVTVLS 227
           L IHLQPQEFVT L+
Sbjct: 183 LQIHLQPQEFVTGLA 190

[Close]

BLAST of ClCG02G008710.2 vs. ExPASy TrEMBL
Match: A0A5A7TB17 (Putative sodium/metabolite cotransporter BASS4 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold370G00080 PE=4 SV=1)

HSP 1 Score: 292.4 bits (747), Expect = 1.9e-75
Identity = 159/195 (81.54%), Postives = 168/195 (86.15%), Query Frame = 0


Query: 32  MALVGTKSLHSLLVSSHWSNPPAFCFQISRFSSNGALLRTSSLALNRKRQIYSPIRASGL 91
           MA VGTKSL    VSSH SNPPAF FQIS FS N ALLR++SLALNRKRQ YSPIRA GL
Sbjct: 3   MAFVGTKSLFH--VSSHRSNPPAFSFQISHFSYNVALLRSTSLALNRKRQSYSPIRACGL 62

Query: 92  PDKVKDDGGRINEPAGVSGSENRVNWFKALSTFANNNFLPLGKLKTYSLVTGVAVGVANP 151
           PDK KDDGGRINEPA VSGSENRV+W + LSTFANNNFLPL      +LVTGVAVG+ANP
Sbjct: 63  PDK-KDDGGRINEPASVSGSENRVSWLETLSTFANNNFLPL------ALVTGVAVGIANP 122

Query: 152 SLGCLADRYYLSKLSTFGIFVVSGLTLRTSEISASLEAWPVAVYGLASILLLTPYFSRLI 211
           SLGCLADRYYLSK STFGIFV+SGLTLRTSEISAS+EAWPVAVYGL SILLLTPYFSRLI
Sbjct: 123 SLGCLADRYYLSKFSTFGIFVISGLTLRTSEISASVEAWPVAVYGLVSILLLTPYFSRLI 182

Query: 212 LLIHLQPQEFVTVLS 227
           L IHL PQEFVT L+
Sbjct: 183 LQIHLHPQEFVTGLA 188

[Close]

BLAST of ClCG02G008710.2 vs. ExPASy TrEMBL
Match: A0A5D3DKR1 (Putative sodium/metabolite cotransporter BASS4 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold27G00180 PE=4 SV=1)

HSP 1 Score: 292.4 bits (747), Expect = 1.9e-75
Identity = 159/195 (81.54%), Postives = 168/195 (86.15%), Query Frame = 0


Query: 32  MALVGTKSLHSLLVSSHWSNPPAFCFQISRFSSNGALLRTSSLALNRKRQIYSPIRASGL 91
           MA VGTKSL    VSSH SNPPAF FQIS FS N ALLR++SLALNRKRQ YSPIRA GL
Sbjct: 3   MAFVGTKSLFH--VSSHRSNPPAFSFQISHFSYNVALLRSTSLALNRKRQSYSPIRACGL 62

Query: 92  PDKVKDDGGRINEPAGVSGSENRVNWFKALSTFANNNFLPLGKLKTYSLVTGVAVGVANP 151
           PDK KDDGGRINEPA VSGSENRV+W + LSTFANNNFLPL      +LVTGVAVG+ANP
Sbjct: 63  PDK-KDDGGRINEPASVSGSENRVSWLETLSTFANNNFLPL------ALVTGVAVGIANP 122

Query: 152 SLGCLADRYYLSKLSTFGIFVVSGLTLRTSEISASLEAWPVAVYGLASILLLTPYFSRLI 211
           SLGCLADRYYLSK STFGIFV+SGLTLRTSEISAS+EAWPVAVYGL SILLLTPYFSRLI
Sbjct: 123 SLGCLADRYYLSKFSTFGIFVISGLTLRTSEISASVEAWPVAVYGLVSILLLTPYFSRLI 182

Query: 212 LLIHLQPQEFVTVLS 227
           L IHL PQEFVT L+
Sbjct: 183 LQIHLHPQEFVTGLA 188

[Close]

BLAST of ClCG02G008710.2 vs. ExPASy TrEMBL
Match: A0A1S3C1I1 (probable sodium/metabolite cotransporter BASS4, chloroplastic isoform X2 OS=Cucumis melo OX=3656 GN=LOC103495958 PE=4 SV=1)

HSP 1 Score: 292.4 bits (747), Expect = 1.9e-75
Identity = 159/195 (81.54%), Postives = 168/195 (86.15%), Query Frame = 0


Query: 32  MALVGTKSLHSLLVSSHWSNPPAFCFQISRFSSNGALLRTSSLALNRKRQIYSPIRASGL 91
           MA VGTKSL    VSSH SNPPAF FQIS FS N ALLR++SLALNRKRQ YSPIRA GL
Sbjct: 3   MAFVGTKSLFH--VSSHRSNPPAFSFQISHFSYNVALLRSTSLALNRKRQSYSPIRACGL 62

Query: 92  PDKVKDDGGRINEPAGVSGSENRVNWFKALSTFANNNFLPLGKLKTYSLVTGVAVGVANP 151
           PDK KDDGGRINEPA VSGSENRV+W + LSTFANNNFLPL      +LVTGVAVG+ANP
Sbjct: 63  PDK-KDDGGRINEPASVSGSENRVSWLETLSTFANNNFLPL------ALVTGVAVGIANP 122

Query: 152 SLGCLADRYYLSKLSTFGIFVVSGLTLRTSEISASLEAWPVAVYGLASILLLTPYFSRLI 211
           SLGCLADRYYLSK STFGIFV+SGLTLRTSEISAS+EAWPVAVYGL SILLLTPYFSRLI
Sbjct: 123 SLGCLADRYYLSKFSTFGIFVISGLTLRTSEISASVEAWPVAVYGLVSILLLTPYFSRLI 182

Query: 212 LLIHLQPQEFVTVLS 227
           L IHL PQEFVT L+
Sbjct: 183 LQIHLHPQEFVTGLA 188

[Close]

BLAST of ClCG02G008710.2 vs. ExPASy TrEMBL
Match: A0A1S3C366 (probable sodium/metabolite cotransporter BASS4, chloroplastic isoform X1 OS=Cucumis melo OX=3656 GN=LOC103495958 PE=4 SV=1)

HSP 1 Score: 292.4 bits (747), Expect = 1.9e-75
Identity = 159/195 (81.54%), Postives = 168/195 (86.15%), Query Frame = 0


Query: 32  MALVGTKSLHSLLVSSHWSNPPAFCFQISRFSSNGALLRTSSLALNRKRQIYSPIRASGL 91
           MA VGTKSL    VSSH SNPPAF FQIS FS N ALLR++SLALNRKRQ YSPIRA GL
Sbjct: 3   MAFVGTKSLFH--VSSHRSNPPAFSFQISHFSYNVALLRSTSLALNRKRQSYSPIRACGL 62

Query: 92  PDKVKDDGGRINEPAGVSGSENRVNWFKALSTFANNNFLPLGKLKTYSLVTGVAVGVANP 151
           PDK KDDGGRINEPA VSGSENRV+W + LSTFANNNFLPL      +LVTGVAVG+ANP
Sbjct: 63  PDK-KDDGGRINEPASVSGSENRVSWLETLSTFANNNFLPL------ALVTGVAVGIANP 122

Query: 152 SLGCLADRYYLSKLSTFGIFVVSGLTLRTSEISASLEAWPVAVYGLASILLLTPYFSRLI 211
           SLGCLADRYYLSK STFGIFV+SGLTLRTSEISAS+EAWPVAVYGL SILLLTPYFSRLI
Sbjct: 123 SLGCLADRYYLSKFSTFGIFVISGLTLRTSEISASVEAWPVAVYGLVSILLLTPYFSRLI 182

Query: 212 LLIHLQPQEFVTVLS 227
           L IHL PQEFVT L+
Sbjct: 183 LQIHLHPQEFVTGLA 188

[Close]

BLAST of ClCG02G008710.2 vs. TAIR 10
Match: AT3G56160.1 (Sodium Bile acid symporter family )

HSP 1 Score: 131.0 bits (328), Expect = 1.4e-30
Identity = 67/119 (56.30%), Postives = 91/119 (76.47%), Query Frame = 0


Query: 107 GVSGSENRVNWFKALSTFANNNFLPLGKLKTYSLVTGVAVGVANPSLGCLADRYYLSKLS 166
           G+S S  R+ + K L +FA++NFLPL      +LV+GV +G ANP+LGCLAD+Y  +K+S
Sbjct: 87  GISASAQRLYFGKELLSFASDNFLPL------ALVSGVGLGFANPTLGCLADKYSFTKIS 146

Query: 167 TFGIFVVSGLTLRTSEISASLEAWPVAVYGLASILLLTPYFSRLILLIHLQPQEFVTVL 226
           T GIF++SGLTLRT  I A+++ WP+ ++GL SILLLTP FSRLI+L+ LQP+E VT L
Sbjct: 147 TCGIFIISGLTLRTEAIGAAVKGWPLGLFGLISILLLTPSFSRLIMLVQLQPRELVTGL 199

The following BLAST results are available for this feature:

BLAST of ClCG02G008710.2 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038900991.1	1.4e-83	87.69	probable sodium/metabolite cotransporter BASS4, chloroplastic [Benincasa hispida...	[more]
XP_004151888.1	9.5e-77	82.05	probable sodium/metabolite cotransporter BASS4, chloroplastic [Cucumis sativus] ...	[more]
XP_008455871.1	4.0e-75	81.54	PREDICTED: probable sodium/metabolite cotransporter BASS4, chloroplastic isoform...	[more]
XP_008455872.1	4.0e-75	81.54	PREDICTED: probable sodium/metabolite cotransporter BASS4, chloroplastic isoform...	[more]
KAA0040654.1	4.0e-75	81.54	putative sodium/metabolite cotransporter BASS4 [Cucumis melo var. makuwa]	[more]

BLAST of ClCG02G008710.2 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
F4IZC4	2.0e-29	56.30	Probable sodium/metabolite cotransporter BASS4, chloroplastic OS=Arabidopsis tha...	[more]
B8AJ09	6.1e-26	45.70	Probable sodium/metabolite cotransporter BASS4, chloroplastic OS=Oryza sativa su...	[more]
Q6ESG1	6.1e-26	45.70	Probable sodium/metabolite cotransporter BASS4, chloroplastic OS=Oryza sativa su...	[more]

BLAST of ClCG02G008710.2 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LN64	4.6e-77	82.05	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G418880 PE=4 SV=1	[more]
A0A5A7TB17	1.9e-75	81.54	Putative sodium/metabolite cotransporter BASS4 OS=Cucumis melo var. makuwa OX=11...	[more]
A0A5D3DKR1	1.9e-75	81.54	Putative sodium/metabolite cotransporter BASS4 OS=Cucumis melo var. makuwa OX=11...	[more]
A0A1S3C1I1	1.9e-75	81.54	probable sodium/metabolite cotransporter BASS4, chloroplastic isoform X2 OS=Cucu...	[more]
A0A1S3C366	1.9e-75	81.54	probable sodium/metabolite cotransporter BASS4, chloroplastic isoform X1 OS=Cucu...	[more]

BLAST of ClCG02G008710.2 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G56160.1	1.4e-30	56.30	Sodium Bile acid symporter family	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR038770	Sodium/solute symporter superfamily	GENE3D	1.20.1530.20		coord: 114..254 e-value: 3.1E-8 score: 35.0
None	No IPR available	PANTHER	PTHR18640:SF12	SODIUM/METABOLITE COTRANSPORTER BASS4, CHLOROPLASTIC-RELATED	coord: 64..226
IPR016833	Putative sodium bile acid cotransporter	PANTHER	PTHR18640	SOLUTE CARRIER FAMILY 10 MEMBER 7	coord: 64..226

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
ClCG02G008710	ClCG02G008710	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
ClCG02G008710.2-exon	ClCG02G008710.2-exon-CG_Chr02:11758978..11759066	exon
ClCG02G008710.2-exon	ClCG02G008710.2-exon-CG_Chr02:11759396..11759591	exon
ClCG02G008710.2-exon	ClCG02G008710.2-exon-CG_Chr02:11759695..11759824	exon
ClCG02G008710.2-exon	ClCG02G008710.2-exon-CG_Chr02:11759895..11760002	exon
ClCG02G008710.2-exon	ClCG02G008710.2-exon-CG_Chr02:11760086..11760153	exon
ClCG02G008710.2-exon	ClCG02G008710.2-exon-CG_Chr02:11760912..11760990	exon
ClCG02G008710.2-exon	ClCG02G008710.2-exon-CG_Chr02:11761319..11761434	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
ClCG02G008710.2-cds	ClCG02G008710.2-cds-CG_Chr02:11758978..11759066	CDS
ClCG02G008710.2-cds	ClCG02G008710.2-cds-CG_Chr02:11759396..11759591	CDS
ClCG02G008710.2-cds	ClCG02G008710.2-cds-CG_Chr02:11759695..11759824	CDS
ClCG02G008710.2-cds	ClCG02G008710.2-cds-CG_Chr02:11759895..11760002	CDS
ClCG02G008710.2-cds	ClCG02G008710.2-cds-CG_Chr02:11760086..11760153	CDS
ClCG02G008710.2-cds	ClCG02G008710.2-cds-CG_Chr02:11760912..11760990	CDS
ClCG02G008710.2-cds	ClCG02G008710.2-cds-CG_Chr02:11761319..11761434	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
ClCG02G008710.2	ClCG02G008710.2-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane