ClCG01G025650.1 (mRNA) Watermelon (Charleston Gray) v2.5

Overview


Name	ClCG01G025650.1
Type	mRNA
Organism	Citrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
Description	Unknown protein
Location	CG_Chr01: 38715403 .. 38717083 (-)
Sequence length	507
RNA-Seq Expression	ClCG01G025650.1
Synteny	ClCG01G025650.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTAGGGATTGAGATGGCGCTAGCGAGAAGTAGTGACTGTTACGTGGGGAGCAGAATGAGAAACATTTCCTGGATTGGACGCGAATCTGGAAGAGAAAGCGCAGAACTGATAGTAATGTTCATCTAACAAGCTTCCGCAGCCGCTGGTGTCGAAATTGAGAGAGTAGCTCAAAGGATCGTAGCGGCATTGGAAGGCGCTGCTGCTGCTCTCTCCGGTGGTGCTACACAGTACTCTGCTGCGTTTCTTCAGTTTGCGCAACAGCTTGGCGACGCAGTTGCAGTGGGAGGAGGATGGCTTCCGGGCGACGGAAGTAGCAGTAACGGCGCCGGAGGTGGAGGAAGTGGCAGTTTTGGCGGAGGCGTTGTTCTTCGGCCACCAGAGAAGCCACATTTGCGTCATGTGAGTTTGAACCGGCGAAATGTGGTGGAAATTGGAAGGTGGAGATGGTTTGGTTACTACTTACCACTTTCAACTCTGTTTAGTTTGGTTGATTTATGTAGGGAAGTGGGAAGGTGTACTTCACGCGTCTAAGATGGCGCGTGAGGATGGACTCTGCCTTTGGATCTCAGCCTCAGCGTGGTTATCAAAGATTTAAAAGAAAAGGGACGGCTTCTTTTCTTTTATTACTTATTCCCTCCCTCTCTAGGAACTCACGCGTCCTCCACGTGATCCACCATACATTATTACATTTACACACACCCTAACTAATTCCCATTTTCCTTTATTTTTAAAGTAATTGTTTTTGTTAATCTTAATTTACATGTTTGTTTAATATTCCTATGATCAAAATTTAATACTCTCAACACCAACTCCAAATTAGATTAAAAATACCTAATGAATAGATGAGTAGAATAAGGTATTAAAGCTAAATCCGAAGCCAAAAACCCAATTGAGAAAGCAATCCATAGGAAATGATGGAAGAGGGCATAGGGTACTCAAAGTCAATATGTTCAGAAATGATTTGAGTGAGAGACTCATTGCCTTTTCTTACACATGTTTTAATTATGTAGGACCCTTCTTTTATGCTCATATAAACAAACATAATATAATTTCTATATATATATATACCACATGTCACCCACTCCAATCTCTTAATTCACTTTTTTTTATTAACATAACTTTATTTTATGTTTATATATTTAATTTATAAGTTTTGAATCTATTTTCGTTTATTTTTTGTTTCTATTTTTTAAAAAAAAAAATTAATTTGGTCTTTATAGTTAACTTTCTTTTTAGTAAATTGATCTAAGTAATCATCAATTGCTACAATAGTTAACAAACAAGCAAGTTAATTAATATAACTTACTATTAAAAAAAATTAAGGGGTCATCAATAGAACTATGAAAAGCTTTATCCTAATTATTGTTGTTGGCACATAAAATTGGAAACATACATCTTTCATCTTATTGGAATCATAAAACATATTTCTTTGAATCGTTATTTTCACATCTTATGTAGAAAATATTTGACATCTTAATCTAAAATATAAGTCTTACCCAGTTAAACTAGTTGAAGAATAAAAAGAAATGAATAGGATGTTTTTAATTAAAAAAAAAATGTAAAATAAATAATGATATGGAGGAATGATTGTTGATGACGTGGAGTTAAAAATTTGGGAGTTTATGAAAAGGAAAAAGAGGGCAGCGTGGGGGGTGGGGGCCATGCTTCCAGTTGCTGA

mRNA sequence

ATGGTAGGGATTGAGATGGCGCTAGCGAGAAGTAGTGACTGTTACGTGGGGAGCAGAATGAGAAACATTTCCTGGATTGGACGCGAATCTGGAAGAGAAAGCGCAGAACTGATAAGAGTAGCTCAAAGGATCGTAGCGGCATTGGAAGGCGCTGCTGCTGCTCTCTCCGGTGGTGCTACACAGTACTCTGCTGCGTTTCTTCAGTTTGCGCAACAGCTTGGCGACGCAGTTGCAGTGGGAGGAGGATGGCTTCCGGGCGACGGAAGTAGCAGTAACGGCGCCGGAGGTGGAGGAAGTGGCAGTTTTGGCGGAGGCGTTGTTCTTCGGCCACCAGAGAAGCCACATTTGCGTCATGGAAGTGGGAAGGTGTACTTCACGCGTCTAAGATGGCGCGTGAGGATGGACTCTGCCTTTGGATCTCAGCCTCAGCGTGTTAAAAATTTGGGAGTTTATGAAAAGGAAAAAGAGGGCAGCGTGGGGGGTGGGGGCCATGCTTCCAGTTGCTGA

Coding sequence (CDS)

ATGGTAGGGATTGAGATGGCGCTAGCGAGAAGTAGTGACTGTTACGTGGGGAGCAGAATGAGAAACATTTCCTGGATTGGACGCGAATCTGGAAGAGAAAGCGCAGAACTGATAAGAGTAGCTCAAAGGATCGTAGCGGCATTGGAAGGCGCTGCTGCTGCTCTCTCCGGTGGTGCTACACAGTACTCTGCTGCGTTTCTTCAGTTTGCGCAACAGCTTGGCGACGCAGTTGCAGTGGGAGGAGGATGGCTTCCGGGCGACGGAAGTAGCAGTAACGGCGCCGGAGGTGGAGGAAGTGGCAGTTTTGGCGGAGGCGTTGTTCTTCGGCCACCAGAGAAGCCACATTTGCGTCATGGAAGTGGGAAGGTGTACTTCACGCGTCTAAGATGGCGCGTGAGGATGGACTCTGCCTTTGGATCTCAGCCTCAGCGTGTTAAAAATTTGGGAGTTTATGAAAAGGAAAAAGAGGGCAGCGTGGGGGGTGGGGGCCATGCTTCCAGTTGCTGA

Protein sequence

MVGIEMALARSSDCYVGSRMRNISWIGRESGRESAELIRVAQRIVAALEGAAAALSGGATQYSAAFLQFAQQLGDAVAVGGGWLPGDGSSSNGAGGGGSGSFGGGVVLRPPEKPHLRHGSGKVYFTRLRWRVRMDSAFGSQPQRVKNLGVYEKEKEGSVGGGGHASSC

Homology

[Close]

BLAST of ClCG01G025650.1 vs. NCBI nr
Match: ADN34211.1 (hypothetical protein [Cucumis melo subsp. melo])

HSP 1 Score: 99.0 bits (245), Expect = 4.2e-17
Identity = 61/97 (62.89%), Postives = 69/97 (71.13%), Query Frame = 0


Query: 6  MALARSSDCYVGSRM-RNISWIGRESGRESAELI-----------------RVAQRIVAA 65
          MALARS +CY   RM R I WIG ESGRESAE++                 RVA+RIVAA
Sbjct: 1  MALARSRECYRRKRMSRKIPWIGGESGRESAEVVIVMIIYQASAAAGVEIERVAERIVAA 60

Query: 66 LEGAAAALSGGATQYSAAFLQFAQQLGDAVAVGGGWL 85
          LEG AAA+SGG TQYSA+FL+FAQQ G+AVAVGGGWL
Sbjct: 61 LEG-AAAVSGGGTQYSASFLEFAQQFGEAVAVGGGWL 96

[Close]

BLAST of ClCG01G025650.1 vs. ExPASy TrEMBL
Match: E5GCL2 (Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 2.0e-17
Identity = 61/97 (62.89%), Postives = 69/97 (71.13%), Query Frame = 0


Query: 6  MALARSSDCYVGSRM-RNISWIGRESGRESAELI-----------------RVAQRIVAA 65
          MALARS +CY   RM R I WIG ESGRESAE++                 RVA+RIVAA
Sbjct: 1  MALARSRECYRRKRMSRKIPWIGGESGRESAEVVIVMIIYQASAAAGVEIERVAERIVAA 60

Query: 66 LEGAAAALSGGATQYSAAFLQFAQQLGDAVAVGGGWL 85
          LEG AAA+SGG TQYSA+FL+FAQQ G+AVAVGGGWL
Sbjct: 61 LEG-AAAVSGGGTQYSASFLEFAQQFGEAVAVGGGWL 96

The following BLAST results are available for this feature:

BLAST of ClCG01G025650.1 vs. NCBI nr


Match Name	E-value	Identity	Description
ADN34211.1	4.2e-17	62.89	hypothetical protein [Cucumis melo subsp. melo]	[more]

BLAST of ClCG01G025650.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of ClCG01G025650.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
E5GCL2	2.0e-17	62.89	Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1	[more]

BLAST of ClCG01G025650.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 88..118

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
ClCG01G025650	ClCG01G025650	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
ClCG01G025650.1-exon	ClCG01G025650.1-exon-CG_Chr01:38715403..38715476	exon
ClCG01G025650.1-exon	ClCG01G025650.1-exon-CG_Chr01:38716502..38716580	exon
ClCG01G025650.1-exon	ClCG01G025650.1-exon-CG_Chr01:38716682..38716921	exon
ClCG01G025650.1-exon	ClCG01G025650.1-exon-CG_Chr01:38716970..38717083	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
ClCG01G025650.1-cds	ClCG01G025650.1-cds-CG_Chr01:38715403..38715476	CDS
ClCG01G025650.1-cds	ClCG01G025650.1-cds-CG_Chr01:38716502..38716580	CDS
ClCG01G025650.1-cds	ClCG01G025650.1-cds-CG_Chr01:38716682..38716921	CDS
ClCG01G025650.1-cds	ClCG01G025650.1-cds-CG_Chr01:38716970..38717083	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
ClCG01G025650.1	ClCG01G025650.1-protein	polypeptide