ClCG01G025650 (gene) Watermelon (Charleston Gray) v2.5

Overview
NameClCG01G025650
Typegene
OrganismCitrullus lanatus subsp. vulgaris cv. Charleston Gray (Watermelon (Charleston Gray) v2.5)
DescriptionUnknown protein
LocationCG_Chr01: 38715403 .. 38717083 (-)
RNA-Seq ExpressionClCG01G025650
SyntenyClCG01G025650
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTAGGGATTGAGATGGCGCTAGCGAGAAGTAGTGACTGTTACGTGGGGAGCAGAATGAGAAACATTTCCTGGATTGGACGCGAATCTGGAAGAGAAAGCGCAGAACTGATAGTAATGTTCATCTAACAAGCTTCCGCAGCCGCTGGTGTCGAAATTGAGAGAGTAGCTCAAAGGATCGTAGCGGCATTGGAAGGCGCTGCTGCTGCTCTCTCCGGTGGTGCTACACAGTACTCTGCTGCGTTTCTTCAGTTTGCGCAACAGCTTGGCGACGCAGTTGCAGTGGGAGGAGGATGGCTTCCGGGCGACGGAAGTAGCAGTAACGGCGCCGGAGGTGGAGGAAGTGGCAGTTTTGGCGGAGGCGTTGTTCTTCGGCCACCAGAGAAGCCACATTTGCGTCATGTGAGTTTGAACCGGCGAAATGTGGTGGAAATTGGAAGGTGGAGATGGTTTGGTTACTACTTACCACTTTCAACTCTGTTTAGTTTGGTTGATTTATGTAGGGAAGTGGGAAGGTGTACTTCACGCGTCTAAGATGGCGCGTGAGGATGGACTCTGCCTTTGGATCTCAGCCTCAGCGTGGTTATCAAAGATTTAAAAGAAAAGGGACGGCTTCTTTTCTTTTATTACTTATTCCCTCCCTCTCTAGGAACTCACGCGTCCTCCACGTGATCCACCATACATTATTACATTTACACACACCCTAACTAATTCCCATTTTCCTTTATTTTTAAAGTAATTGTTTTTGTTAATCTTAATTTACATGTTTGTTTAATATTCCTATGATCAAAATTTAATACTCTCAACACCAACTCCAAATTAGATTAAAAATACCTAATGAATAGATGAGTAGAATAAGGTATTAAAGCTAAATCCGAAGCCAAAAACCCAATTGAGAAAGCAATCCATAGGAAATGATGGAAGAGGGCATAGGGTACTCAAAGTCAATATGTTCAGAAATGATTTGAGTGAGAGACTCATTGCCTTTTCTTACACATGTTTTAATTATGTAGGACCCTTCTTTTATGCTCATATAAACAAACATAATATAATTTCTATATATATATATACCACATGTCACCCACTCCAATCTCTTAATTCACTTTTTTTTATTAACATAACTTTATTTTATGTTTATATATTTAATTTATAAGTTTTGAATCTATTTTCGTTTATTTTTTGTTTCTATTTTTTAAAAAAAAAAATTAATTTGGTCTTTATAGTTAACTTTCTTTTTAGTAAATTGATCTAAGTAATCATCAATTGCTACAATAGTTAACAAACAAGCAAGTTAATTAATATAACTTACTATTAAAAAAAATTAAGGGGTCATCAATAGAACTATGAAAAGCTTTATCCTAATTATTGTTGTTGGCACATAAAATTGGAAACATACATCTTTCATCTTATTGGAATCATAAAACATATTTCTTTGAATCGTTATTTTCACATCTTATGTAGAAAATATTTGACATCTTAATCTAAAATATAAGTCTTACCCAGTTAAACTAGTTGAAGAATAAAAAGAAATGAATAGGATGTTTTTAATTAAAAAAAAAATGTAAAATAAATAATGATATGGAGGAATGATTGTTGATGACGTGGAGTTAAAAATTTGGGAGTTTATGAAAAGGAAAAAGAGGGCAGCGTGGGGGGTGGGGGCCATGCTTCCAGTTGCTGA

mRNA sequence

ATGGTAGGGATTGAGATGGCGCTAGCGAGAAGTAGTGACTGTTACGTGGGGAGCAGAATGAGAAACATTTCCTGGATTGGACGCGAATCTGGAAGAGAAAGCGCAGAACTGATAAGAGTAGCTCAAAGGATCGTAGCGGCATTGGAAGGCGCTGCTGCTGCTCTCTCCGGTGGTGCTACACAGTACTCTGCTGCGTTTCTTCAGTTTGCGCAACAGCTTGGCGACGCAGTTGCAGTGGGAGGAGGATGGCTTCCGGGCGACGGAAGTAGCAGTAACGGCGCCGGAGGTGGAGGAAGTGGCAGTTTTGGCGGAGGCGTTGTTCTTCGGCCACCAGAGAAGCCACATTTGCGTCATGGAAGTGGGAAGGTGTACTTCACGCGTCTAAGATGGCGCGTGAGGATGGACTCTGCCTTTGGATCTCAGCCTCAGCGTGTTAAAAATTTGGGAGTTTATGAAAAGGAAAAAGAGGGCAGCGTGGGGGGTGGGGGCCATGCTTCCAGTTGCTGA

Coding sequence (CDS)

ATGGTAGGGATTGAGATGGCGCTAGCGAGAAGTAGTGACTGTTACGTGGGGAGCAGAATGAGAAACATTTCCTGGATTGGACGCGAATCTGGAAGAGAAAGCGCAGAACTGATAAGAGTAGCTCAAAGGATCGTAGCGGCATTGGAAGGCGCTGCTGCTGCTCTCTCCGGTGGTGCTACACAGTACTCTGCTGCGTTTCTTCAGTTTGCGCAACAGCTTGGCGACGCAGTTGCAGTGGGAGGAGGATGGCTTCCGGGCGACGGAAGTAGCAGTAACGGCGCCGGAGGTGGAGGAAGTGGCAGTTTTGGCGGAGGCGTTGTTCTTCGGCCACCAGAGAAGCCACATTTGCGTCATGGAAGTGGGAAGGTGTACTTCACGCGTCTAAGATGGCGCGTGAGGATGGACTCTGCCTTTGGATCTCAGCCTCAGCGTGTTAAAAATTTGGGAGTTTATGAAAAGGAAAAAGAGGGCAGCGTGGGGGGTGGGGGCCATGCTTCCAGTTGCTGA

Protein sequence

MVGIEMALARSSDCYVGSRMRNISWIGRESGRESAELIRVAQRIVAALEGAAAALSGGATQYSAAFLQFAQQLGDAVAVGGGWLPGDGSSSNGAGGGGSGSFGGGVVLRPPEKPHLRHGSGKVYFTRLRWRVRMDSAFGSQPQRVKNLGVYEKEKEGSVGGGGHASSC
Homology
[Close]
BLAST of ClCG01G025650 vs. NCBI nr
Match: ADN34211.1 (hypothetical protein [Cucumis melo subsp. melo])

HSP 1 Score: 99.0 bits (245), Expect = 4.2e-17
Identity = 61/97 (62.89%), Postives = 69/97 (71.13%), Query Frame = 0 

Query: 6  MALARSSDCYVGSRM-RNISWIGRESGRESAELI-----------------RVAQRIVAA 65
          MALARS +CY   RM R I WIG ESGRESAE++                 RVA+RIVAA
Sbjct: 1  MALARSRECYRRKRMSRKIPWIGGESGRESAEVVIVMIIYQASAAAGVEIERVAERIVAA 60

Query: 66 LEGAAAALSGGATQYSAAFLQFAQQLGDAVAVGGGWL 85
          LEG AAA+SGG TQYSA+FL+FAQQ G+AVAVGGGWL
Sbjct: 61 LEG-AAAVSGGGTQYSASFLEFAQQFGEAVAVGGGWL 96

[Close]
BLAST of ClCG01G025650 vs. ExPASy TrEMBL
Match: E5GCL2 (Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 2.0e-17
Identity = 61/97 (62.89%), Postives = 69/97 (71.13%), Query Frame = 0 

Query: 6  MALARSSDCYVGSRM-RNISWIGRESGRESAELI-----------------RVAQRIVAA 65
          MALARS +CY   RM R I WIG ESGRESAE++                 RVA+RIVAA
Sbjct: 1  MALARSRECYRRKRMSRKIPWIGGESGRESAEVVIVMIIYQASAAAGVEIERVAERIVAA 60

Query: 66 LEGAAAALSGGATQYSAAFLQFAQQLGDAVAVGGGWL 85
          LEG AAA+SGG TQYSA+FL+FAQQ G+AVAVGGGWL
Sbjct: 61 LEG-AAAVSGGGTQYSASFLEFAQQFGEAVAVGGGWL 96

The following BLAST results are available for this feature:
BLAST of ClCG01G025650 vs. NCBI nr
Match NameE-valueIdentityDescription
ADN34211.14.2e-1762.89hypothetical protein [Cucumis melo subsp. melo][more]
BLAST of ClCG01G025650 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of ClCG01G025650 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
E5GCL22.0e-1762.89Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1[more]
BLAST of ClCG01G025650 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (Charleston Gray) v2.5
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 88..118

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG01G025650.1ClCG01G025650.1mRNA