CcUC08G155300.1 (mRNA) Watermelon (PI 537277) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.CGGCTGGAATCATCGGAACCAGTGAGTGGTCAATCTTAACCTAACCAACGGGTTAGTGTTTGTTCCTCTCTGCTTTGCTTTGCCCTGCCGCCCGCCTCTGATCTCGAATCGTTGGGCTTGTACCTGCAACTGAAGCCGATCGCTTCTTCTTCTTCCATCCATGGCGGAAGCCCAGAGCGAAAAAACCCCTTCCTTAACTGAGGTATTCTTTTTGCAGCTTTCACTATCTCAAATTTCTTCGCTATACCTAAAACTTTGTTTTAGCTACCTCCTTCCTTCTTTTTTGTAATTTTTTCGTGGGTAATGCACTTTAATTGCTCGATTCGCAATTGATTTTGATGGATCTGTTGTTATATGGTAGGAATTCTTCAATTATGAAGACATGTGGGGTTTTTAGCGGTAAATTCATACTTTTTGTTTAGGAAAAAAATTGTAGAGCTGTGGTAAATTCCCTGGATTAGATCCCCAGATTCCACTGGAAATAGAAATAGTTGTGAGTTCCATTAGCATGACTGGATTCGCCGGTTTCGACTCCAATAAATGGTTGGAGAATCCTTCCTTTGTCCTGGTGGCTTGTTTTGCTGTCTTTATATCCTTTTTTTTTTTTAGGAGATCAATATGGTTGAGTCAAATTTTCTTCTTAACTAGAACTCAGTGCAAAATCACCGATTGCAGGCTTGAACCTTATGAGTCATGGTAAATTTAGTTATATTTCAAAACTCCCCTCAGGCCCTCACTGCAGGCTTGAAGATTTATAAAATGACCAACAAGTGAAAATCAGTATTAGTTGAGGTGGAAATAATATTATAGAGGTTTAAACACAAGGCCTCATGTTAGGTCTTATGTTCTGATACTATATCAAACCATCGATCAACCTAAAAGGTTAAGCTCCTAAGCTAATGAATCATGGTAAATTTAATTATATCATACTTCAATACTCTCCCAACACTGAGCAATGAACTCTGTTGGCGCATGTTTCAGTTGGTTTGTTATATGAATCGTGGGAGCTTCTGGTGCCTTACAATTTCTCTGCGGTATTGTGTTTTTAGAGATGAAAGCAATTTTACCCTTAAGAGCATAGTGAGAAGCACGTCTTCGGTTATTATCGTTCTCATTTAGGGACGTTGTCATAGTCTCCTAGAGCCTGTCCCCTTTGCTTTTACAAATTCTAAACCTGGTAATGTTTCGATCTGAGAATTGAGAATAACTTTCTGTTAATTTGGCTTGAAGCAATATGCCTTGAAAGAAAATGAGAAGGTGGATATACCAAAGCCCTCTGAAGTAAAAGAGGTGGAGAACCCTGAAAATGCTGCTCCTGCTGAAGTTGTTGTGAAGAATGATGAACCACCTGTTGAAGCTGATGCTGATCAAGGGAGTGACAATTCTCCTGCTCAAGAAAACAATGGAGATGCTCCAGCAGCTGCTGCTGTAGAGGACGTTGAAACCAGTCCTGCTGCTGAAAATGACAGTGGAGCTGCCGATGAAAGTAGTGGAGCTGGAGAAGAGGAAAATTCTGGGGATCAAGAAAGCACCGATGAGCAACCTGAGATTAAGGTTGCTGCCCTGAGGAATTATCAACAATGCTTTTGTTTACTTTTGTATATATTGTTTGTTCATTGTTTTGTTTCTCTCATATGCAGCTCGAAACAGCACCAGTAGATTTCCGTTTCCCTACTACAAATCAAACTAGGCATTGCTTCACCCGCTACATTGAGTACCACAGGTAACTGATATGTTCTTTCCTACATATTTTTTTTGTCATTTCTTGGTCCTGTCATAATTTAGATGAACTTTCTTGAGAGTATGTGCTTATCATTGTGATGCGTACAGATGCATACAAGCGAAAGGGGAAGGTGCTCCGGAGTGCAACAAGTTTGCGAAATATTATCGTTCTCTTTGCCCAAGTGAATGGGTATGCGCTTATCCTAAAATCCTTGTTGGATTCATTTCGTTCACTTATTTTCTGTTTTTAGAGCATTCAAAAACACATCTGCTCAACCTTTTAGGAATTTGTTTTATGCTCAGAACACATTCCGTTCACAAGTGGTCGAATCGACATAATGTTATTTTGTGTCATTAATTTAGTTTGAGCAGTAAGGGTTCATGATGAATGATCAAATACACTGCTTAATCCAATCGTTTGCCTCTTCAAAACCATTATGCTGTGTTCATGTCTGATGCTGTTTTGCCAGTAATGTGTACTCGTAATCAATGGATAATGCATCAGTTTCTCGCGAATACTTCGGTGAATTATGTCAAAAGCTCATTAAAGTTTGGTCATAATATGGTTATAGTAACGCCGTGTATTGTGATAATTGTTGCAGGTAGAGAAGTGGAACGAGCAGAGGGAGAATGGAACCTTCCCGGGTCCGCTGTAGGAGTAAAAATTTAGCAGGCAGTTCGCCACACGCTGCCGTACCAAGGCAAATAAACTCTGGGGAATGTTCTCTTTCGAACAATTGAGTTACAATAATTTTCGGCTGTTTTTGGTATTTTATTCAAAATCCATTTGCAAGCAAGTTTTGTTGATGCAACCGCATCATTGTTCCTGATTAACATGCCAAATCGTTTTTCTTATCTAGATCTTGTTTCATCAAATTACATGGAGCTGGAAGCACTCCTGTAAGACCGCCATCTTATATGTGCACTGATTGATGCATTTATGAAAATTTACAATAAGCTGTTGAAATTAATCCGAAT CGGCTGGAATCATCGGAACCAGTGAGTGGTCAATCTTAACCTAACCAACGGGTTAGTGTTTGTTCCTCTCTGCTTTGCTTTGCCCTGCCGCCCGCCTCTGATCTCGAATCGTTGGGCTTGTACCTGCAACTGAAGCCGATCGCTTCTTCTTCTTCCATCCATGGCGGAAGCCCAGAGCGAAAAAACCCCTTCCTTAACTGAGAGCTGTGGTAAATTCCCTGGATTAGATCCCCAGATTCCACTGGAAATAGAAATAGTTGTGAGTTCCATTAGCATGACTGGATTCGCCGGTTTCGACTCCAATAAATGGTTGGAGAATCCTTCCTTTGTCCTGCAATATGCCTTGAAAGAAAATGAGAAGGTGGATATACCAAAGCCCTCTGAAGTAAAAGAGGTGGAGAACCCTGAAAATGCTGCTCCTGCTGAAGTTGTTGTGAAGAATGATGAACCACCTGTTGAAGCTGATGCTGATCAAGGGAGTGACAATTCTCCTGCTCAAGAAAACAATGGAGATGCTCCAGCAGCTGCTGCTGTAGAGGACGTTGAAACCAGTCCTGCTGCTGAAAATGACAGTGGAGCTGCCGATGAAAGTAGTGGAGCTGGAGAAGAGGAAAATTCTGGGGATCAAGAAAGCACCGATGAGCAACCTGAGATTAAGCTCGAAACAGCACCAGTAGATTTCCGTTTCCCTACTACAAATCAAACTAGGCATTGCTTCACCCGCTACATTGAGTACCACAGATGCATACAAGCGAAAGGGGAAGGTGCTCCGGAGTGCAACAAGTTTGCGAAATATTATCGTTCTCTTTGCCCAAGTGAATGGGTAGAGAAGTGGAACGAGCAGAGGGAGAATGGAACCTTCCCGGGTCCGCTATCTTGTTTCATCAAATTACATGGAGCTGGAAGCACTCCTGTAAGACCGCCATCTTATATGTGCACTGATTGATGCATTTATGAAAATTTACAATAAGCTGTTGAAATTAATCCGAAT ATGGCGGAAGCCCAGAGCGAAAAAACCCCTTCCTTAACTGAGAGCTGTGGTAAATTCCCTGGATTAGATCCCCAGATTCCACTGGAAATAGAAATAGTTGTGAGTTCCATTAGCATGACTGGATTCGCCGGTTTCGACTCCAATAAATGGTTGGAGAATCCTTCCTTTGTCCTGCAATATGCCTTGAAAGAAAATGAGAAGGTGGATATACCAAAGCCCTCTGAAGTAAAAGAGGTGGAGAACCCTGAAAATGCTGCTCCTGCTGAAGTTGTTGTGAAGAATGATGAACCACCTGTTGAAGCTGATGCTGATCAAGGGAGTGACAATTCTCCTGCTCAAGAAAACAATGGAGATGCTCCAGCAGCTGCTGCTGTAGAGGACGTTGAAACCAGTCCTGCTGCTGAAAATGACAGTGGAGCTGCCGATGAAAGTAGTGGAGCTGGAGAAGAGGAAAATTCTGGGGATCAAGAAAGCACCGATGAGCAACCTGAGATTAAGCTCGAAACAGCACCAGTAGATTTCCGTTTCCCTACTACAAATCAAACTAGGCATTGCTTCACCCGCTACATTGAGTACCACAGATGCATACAAGCGAAAGGGGAAGGTGCTCCGGAGTGCAACAAGTTTGCGAAATATTATCGTTCTCTTTGCCCAAGTGAATGGGTAGAGAAGTGGAACGAGCAGAGGGAGAATGGAACCTTCCCGGGTCCGCTATCTTGTTTCATCAAATTACATGGAGCTGGAAGCACTCCTGTAAGACCGCCATCTTATATGTGCACTGATTGA MAEAQSEKTPSLTESCGKFPGLDPQIPLEIEIVVSSISMTGFAGFDSNKWLENPSFVLQYALKENEKVDIPKPSEVKEVENPENAAPAEVVVKNDEPPVEADADQGSDNSPAQENNGDAPAAAAVEDVETSPAAENDSGAADESSGAGEEENSGDQESTDEQPEIKLETAPVDFRFPTTNQTRHCFTRYIEYHRCIQAKGEGAPECNKFAKYYRSLCPSEWVEKWNEQRENGTFPGPLSCFIKLHGAGSTPVRPPSYMCTD Homology
BLAST of CcUC08G155300.1 vs. NCBI nr
Match: XP_038886001.1 (cytochrome c oxidase subunit 6b-1-like [Benincasa hispida]) HSP 1 Score: 320.1 bits (819), Expect = 1.8e-83 Identity = 168/189 (88.89%), Postives = 176/189 (93.12%), Query Frame = 0
BLAST of CcUC08G155300.1 vs. NCBI nr
Match: XP_004152624.1 (cytochrome c oxidase subunit 6b-1 [Cucumis sativus] >KGN62709.1 hypothetical protein Csa_022497 [Cucumis sativus]) HSP 1 Score: 305.1 bits (780), Expect = 6.0e-79 Identity = 163/189 (86.24%), Postives = 173/189 (91.53%), Query Frame = 0
BLAST of CcUC08G155300.1 vs. NCBI nr
Match: XP_008444857.1 (PREDICTED: cytochrome c oxidase subunit 6b-1-like [Cucumis melo] >KAA0065134.1 cytochrome c oxidase subunit 6b-1-like [Cucumis melo var. makuwa]) HSP 1 Score: 297.4 bits (760), Expect = 1.2e-76 Identity = 160/187 (85.56%), Postives = 164/187 (87.70%), Query Frame = 0
BLAST of CcUC08G155300.1 vs. NCBI nr
Match: XP_023547029.1 (cytochrome c oxidase subunit 6b-1-like isoform X1 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 288.5 bits (737), Expect = 5.8e-74 Identity = 152/186 (81.72%), Postives = 159/186 (85.48%), Query Frame = 0
BLAST of CcUC08G155300.1 vs. NCBI nr
Match: KAG6598699.1 (Cytochrome c oxidase subunit 6b-1, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 284.6 bits (727), Expect = 8.3e-73 Identity = 151/186 (81.18%), Postives = 157/186 (84.41%), Query Frame = 0
BLAST of CcUC08G155300.1 vs. ExPASy Swiss-Prot
Match: Q9S7L9 (Cytochrome c oxidase subunit 6b-1 OS=Arabidopsis thaliana OX=3702 GN=COX6B-1 PE=1 SV=1) HSP 1 Score: 168.3 bits (425), Expect = 1.1e-40 Identity = 104/191 (54.45%), Postives = 129/191 (67.54%), Query Frame = 0
BLAST of CcUC08G155300.1 vs. ExPASy Swiss-Prot
Match: Q9SUD3 (Cytochrome c oxidase subunit 6b-3 OS=Arabidopsis thaliana OX=3702 GN=COX6B-3 PE=2 SV=2) HSP 1 Score: 144.8 bits (364), Expect = 1.4e-33 Identity = 61/77 (79.22%), Postives = 68/77 (88.31%), Query Frame = 0
BLAST of CcUC08G155300.1 vs. ExPASy Swiss-Prot
Match: Q945L0 (Cytochrome c oxidase subunit 6b-2 OS=Arabidopsis thaliana OX=3702 GN=COX6B-2 PE=2 SV=1) HSP 1 Score: 142.5 bits (358), Expect = 6.7e-33 Identity = 59/77 (76.62%), Postives = 69/77 (89.61%), Query Frame = 0
BLAST of CcUC08G155300.1 vs. ExPASy Swiss-Prot
Match: O94581 (Cytochrome c oxidase subunit 12, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=cox12 PE=3 SV=2) HSP 1 Score: 106.7 bits (265), Expect = 4.1e-22 Identity = 46/84 (54.76%), Postives = 57/84 (67.86%), Query Frame = 0
BLAST of CcUC08G155300.1 vs. ExPASy Swiss-Prot
Match: Q1K8U2 (Cytochrome c oxidase subunit 12, mitochondrial OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) OX=367110 GN=cox-13 PE=1 SV=1) HSP 1 Score: 92.8 bits (229), Expect = 6.1e-18 Identity = 37/64 (57.81%), Postives = 46/64 (71.88%), Query Frame = 0
BLAST of CcUC08G155300.1 vs. ExPASy TrEMBL
Match: A0A0A0LNV6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G369100 PE=4 SV=1) HSP 1 Score: 305.1 bits (780), Expect = 2.9e-79 Identity = 163/189 (86.24%), Postives = 173/189 (91.53%), Query Frame = 0
BLAST of CcUC08G155300.1 vs. ExPASy TrEMBL
Match: A0A5A7VCW9 (Cytochrome c oxidase subunit 6b-1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82G004690 PE=4 SV=1) HSP 1 Score: 297.4 bits (760), Expect = 6.0e-77 Identity = 160/187 (85.56%), Postives = 164/187 (87.70%), Query Frame = 0
BLAST of CcUC08G155300.1 vs. ExPASy TrEMBL
Match: A0A1S3BC78 (cytochrome c oxidase subunit 6b-1-like OS=Cucumis melo OX=3656 GN=LOC103488079 PE=4 SV=1) HSP 1 Score: 297.4 bits (760), Expect = 6.0e-77 Identity = 160/187 (85.56%), Postives = 164/187 (87.70%), Query Frame = 0
BLAST of CcUC08G155300.1 vs. ExPASy TrEMBL
Match: A0A6J1KAZ5 (cytochrome c oxidase subunit 6b-1-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111492226 PE=4 SV=1) HSP 1 Score: 283.9 bits (725), Expect = 6.9e-73 Identity = 151/186 (81.18%), Postives = 157/186 (84.41%), Query Frame = 0
BLAST of CcUC08G155300.1 vs. ExPASy TrEMBL
Match: A0A6J1HH76 (cytochrome c oxidase subunit 6b-1-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111462906 PE=4 SV=1) HSP 1 Score: 281.2 bits (718), Expect = 4.5e-72 Identity = 149/186 (80.11%), Postives = 156/186 (83.87%), Query Frame = 0
BLAST of CcUC08G155300.1 vs. TAIR 10
Match: AT1G22450.1 (cytochrome C oxidase 6B ) HSP 1 Score: 168.3 bits (425), Expect = 8.1e-42 Identity = 104/191 (54.45%), Postives = 129/191 (67.54%), Query Frame = 0
BLAST of CcUC08G155300.1 vs. TAIR 10
Match: AT4G28060.1 (Cytochrome c oxidase, subunit Vib family protein ) HSP 1 Score: 144.8 bits (364), Expect = 9.6e-35 Identity = 61/77 (79.22%), Postives = 68/77 (88.31%), Query Frame = 0
BLAST of CcUC08G155300.1 vs. TAIR 10
Match: AT5G57815.1 (Cytochrome c oxidase, subunit Vib family protein ) HSP 1 Score: 142.5 bits (358), Expect = 4.8e-34 Identity = 59/77 (76.62%), Postives = 69/77 (89.61%), Query Frame = 0
BLAST of CcUC08G155300.1 vs. TAIR 10
Match: AT1G32710.1 (Cytochrome c oxidase, subunit Vib family protein ) HSP 1 Score: 75.1 bits (183), Expect = 9.3e-14 Identity = 31/63 (49.21%), Postives = 41/63 (65.08%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
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