CcUC04G080390.1 (mRNA) Watermelon (PI 537277) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATGAATCCTCTGAAAGCAGGTTACAAGGCTCTTGAACTTATAGAACGCGACATCCTCACTCAAAGTCAAAATTCATCCCCCTGTTTTCATCTGCATGCTGGATTCCCTAAACTATGTCAAACTGCGCAAAAGAAATGCTTGCAGATGCCCAAGCCAATTTTCAGTCTGAACCTCTCGTAATCTCCCCTTCAAGCCAGTGGTATGTTTGTGAGGAATTGTCAGAGATTTGCAACAAAAGGATACAAATAATTAGTGAAGCAATTAAAGATCAGCATGGTATTTAGCATGTTTCTTCCTTGATGCACTCGTCGGAGGAAGAACTAGAAGAAACTTAGTTGCTCTAGTTTAACCCATCATTCAAGTATTGATCTTGTAGATATTTTATGCCCCACCCCAGAGAGAGAGGAAAGAATAATTTGAGGCTTTATATTTTTATGTCCATGCATTCATCTCATTATTTTTTTGTATTATGCTAAAATTGATTGTGTTACAGAAGAAAAAGCTTCAAAGACGCAAGAGGGAGTTGAAGGCTTTCGATCTCTCTGCTCTATCAGAGTCTATTCCTAGACTGGAGGCTTCTGAACAAAAATCTTTTGCAGCCAAAGTCGTTGAAAGTAAATTGCAAGTCTAGGCTAAAGTTTATGTAAGTTGCTTGCTAGCTTGTTACCATTGTTTGACATGCTTTATAGTTTTTCGCTATACTTATGTTTTGTAATTATGGGTTCCTTTTATTTATCAGATTGAAGGAATTAAAGCAAATGGTTAGAGTTCTTAGACACCCTAAATTCCAGGCAGACCCCTTGGGATCTATACAACTACATTTAGAGGCCACACAACCAGTTGAGGAACCGAAGAAAAAGAAGAGGAATATAAATGGGAGCAAGAAAAGGAAAGAGGAGAAGTTGAAAGCCTGTACAAGACCTTCTCCTATGGAGATGTGACTGATCTCTCACAACCCTTGTCAGTTGTAGCTTGGTGAATATATTTATGGGCATTTTAATTGGTAGCACAGTTCAGCTCCCTTGAGATCTAAATTCCTCCTTCCTTTGGTAGCTATAGGAGGAATCTCTTTTGATTCCAGTAGATGATTATTGTTGATGAAGCAATTGTTCAACTAGTCATGTTCCATAAGATTATGCATTTTCAAACTATTTTAGATATTATAATCAATCCACAGTTAACATTGTGATTTTACTCGCACAGTTATATGACCCCAT ATGAATCCTCTGAAAGCAGGTTACAAGGCTCTTGAACTTATAGAACGCGACATCCTCACTCAAAGTCAAAATTCATCCCCCTGTTTTCATCTGCATGCTGGATTCCCTAAACTATGTCAAACTGCGCAAAAGAAATGCTTGCAGATGCCCAAGCCAATTTTCAGTCTGAACCTCTCATTGAAGGAATTAAAGCAAATGGTTAGAGTTCTTAGACACCCTAAATTCCAGGCAGACCCCTTGGGATCTATACAACTACATTTAGAGGCCACACAACCAGTTGAGGAACCGAAGAAAAAGAAGAGGAATATAAATGGGAGCAAGAAAAGGAAAGAGGAGAAGTTGAAAGCCTGTACAAGACCTTCTCCTATGGAGATGTGACTGATCTCTCACAACCCTTGTCAGTTGTAGCTTGGTGAATATATTTATGGGCATTTTAATTGGTAGCACAGTTCAGCTCCCTTGAGATCTAAATTCCTCCTTCCTTTGGTAGCTATAGGAGGAATCTCTTTTGATTCCAGTAGATGATTATTGTTGATGAAGCAATTGTTCAACTAGTCATGTTCCATAAGATTATGCATTTTCAAACTATTTTAGATATTATAATCAATCCACAGTTAACATTGTGATTTTACTCGCACAGTTATATGACCCCAT ATGAATCCTCTGAAAGCAGGTTACAAGGCTCTTGAACTTATAGAACGCGACATCCTCACTCAAAGTCAAAATTCATCCCCCTGTTTTCATCTGCATGCTGGATTCCCTAAACTATGTCAAACTGCGCAAAAGAAATGCTTGCAGATGCCCAAGCCAATTTTCAGTCTGAACCTCTCATTGAAGGAATTAAAGCAAATGGTTAGAGTTCTTAGACACCCTAAATTCCAGGCAGACCCCTTGGGATCTATACAACTACATTTAGAGGCCACACAACCAGTTGAGGAACCGAAGAAAAAGAAGAGGAATATAAATGGGAGCAAGAAAAGGAAAGAGGAGAAGTTGAAAGCCTGTACAAGACCTTCTCCTATGGAGATGTGA MNPLKAGYKALELIERDILTQSQNSSPCFHLHAGFPKLCQTAQKKCLQMPKPIFSLNLSLKELKQMVRVLRHPKFQADPLGSIQLHLEATQPVEEPKKKKRNINGSKKRKEEKLKACTRPSPMEM Homology
BLAST of CcUC04G080390.1 vs. NCBI nr
Match: XP_023515417.1 (putative ribosome biogenesis protein slx9-like [Cucurbita pepo subsp. pepo] >XP_023515418.1 putative ribosome biogenesis protein slx9-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 95.1 bits (235), Expect = 4.5e-16 Identity = 51/70 (72.86%), Postives = 55/70 (78.57%), Query Frame = 0
BLAST of CcUC04G080390.1 vs. NCBI nr
Match: KAA0037498.1 (putative ribosome biogenesis protein slx9-like [Cucumis melo var. makuwa] >TYK01973.1 putative ribosome biogenesis protein slx9-like [Cucumis melo var. makuwa]) HSP 1 Score: 94.4 bits (233), Expect = 7.6e-16 Identity = 51/70 (72.86%), Postives = 54/70 (77.14%), Query Frame = 0
BLAST of CcUC04G080390.1 vs. NCBI nr
Match: KAG7023365.1 (hypothetical protein SDJN02_14390 [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 92.8 bits (229), Expect = 2.2e-15 Identity = 50/68 (73.53%), Postives = 54/68 (79.41%), Query Frame = 0
BLAST of CcUC04G080390.1 vs. NCBI nr
Match: KAA0062508.1 (putative ribosome biogenesis protein slx9-like [Cucumis melo var. makuwa]) HSP 1 Score: 92.4 bits (228), Expect = 2.9e-15 Identity = 50/70 (71.43%), Postives = 54/70 (77.14%), Query Frame = 0
BLAST of CcUC04G080390.1 vs. NCBI nr
Match: XP_016900348.1 (PREDICTED: putative ribosome biogenesis protein slx9-like, partial [Cucumis melo]) HSP 1 Score: 92.4 bits (228), Expect = 2.9e-15 Identity = 50/70 (71.43%), Postives = 54/70 (77.14%), Query Frame = 0
BLAST of CcUC04G080390.1 vs. ExPASy TrEMBL
Match: A0A5D3BQL6 (Putative ribosome biogenesis protein slx9-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold808G00780 PE=4 SV=1) HSP 1 Score: 94.4 bits (233), Expect = 3.7e-16 Identity = 51/70 (72.86%), Postives = 54/70 (77.14%), Query Frame = 0
BLAST of CcUC04G080390.1 vs. ExPASy TrEMBL
Match: A0A5A7V4K7 (Putative ribosome biogenesis protein slx9-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold130G001080 PE=4 SV=1) HSP 1 Score: 92.4 bits (228), Expect = 1.4e-15 Identity = 50/70 (71.43%), Postives = 54/70 (77.14%), Query Frame = 0
BLAST of CcUC04G080390.1 vs. ExPASy TrEMBL
Match: A0A1S4DWK8 (putative ribosome biogenesis protein slx9-like OS=Cucumis melo OX=3656 GN=LOC103491493 PE=4 SV=1) HSP 1 Score: 92.4 bits (228), Expect = 1.4e-15 Identity = 50/70 (71.43%), Postives = 54/70 (77.14%), Query Frame = 0
BLAST of CcUC04G080390.1 vs. ExPASy TrEMBL
Match: A0A6J1JDX4 (putative ribosome biogenesis protein slx9-like OS=Cucurbita maxima OX=3661 GN=LOC111484925 PE=4 SV=1) HSP 1 Score: 92.0 bits (227), Expect = 1.8e-15 Identity = 50/70 (71.43%), Postives = 54/70 (77.14%), Query Frame = 0
BLAST of CcUC04G080390.1 vs. ExPASy TrEMBL
Match: A0A0A0L113 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G442590 PE=4 SV=1) HSP 1 Score: 92.0 bits (227), Expect = 1.8e-15 Identity = 49/70 (70.00%), Postives = 54/70 (77.14%), Query Frame = 0
BLAST of CcUC04G080390.1 vs. TAIR 10
Match: AT2G01640.1 (unknown protein; Has 51 Blast hits to 51 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 2; Plants - 41; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink). ) HSP 1 Score: 55.5 bits (132), Expect = 3.7e-08 Identity = 37/74 (50.00%), Postives = 47/74 (63.51%), Query Frame = 0
BLAST of CcUC04G080390.1 vs. TAIR 10
Match: AT2G01640.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages. ) HSP 1 Score: 55.5 bits (132), Expect = 3.7e-08 Identity = 37/74 (50.00%), Postives = 47/74 (63.51%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
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