CcUC04G080390 (gene) Watermelon (PI 537277) v1

Overview


Name	CcUC04G080390
Type	gene
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	Ribosome biogenesis protein
Location	CicolChr04: 34569176 .. 34570392 (+)
RNA-Seq Expression	CcUC04G080390
Synteny	CcUC04G080390

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATCCTCTGAAAGCAGGTTACAAGGCTCTTGAACTTATAGAACGCGACATCCTCACTCAAAGTCAAAATTCATCCCCCTGTTTTCATCTGCATGCTGGATTCCCTAAACTATGTCAAACTGCGCAAAAGAAATGCTTGCAGATGCCCAAGCCAATTTTCAGTCTGAACCTCTCGTAATCTCCCCTTCAAGCCAGTGGTATGTTTGTGAGGAATTGTCAGAGATTTGCAACAAAAGGATACAAATAATTAGTGAAGCAATTAAAGATCAGCATGGTATTTAGCATGTTTCTTCCTTGATGCACTCGTCGGAGGAAGAACTAGAAGAAACTTAGTTGCTCTAGTTTAACCCATCATTCAAGTATTGATCTTGTAGATATTTTATGCCCCACCCCAGAGAGAGAGGAAAGAATAATTTGAGGCTTTATATTTTTATGTCCATGCATTCATCTCATTATTTTTTTGTATTATGCTAAAATTGATTGTGTTACAGAAGAAAAAGCTTCAAAGACGCAAGAGGGAGTTGAAGGCTTTCGATCTCTCTGCTCTATCAGAGTCTATTCCTAGACTGGAGGCTTCTGAACAAAAATCTTTTGCAGCCAAAGTCGTTGAAAGTAAATTGCAAGTCTAGGCTAAAGTTTATGTAAGTTGCTTGCTAGCTTGTTACCATTGTTTGACATGCTTTATAGTTTTTCGCTATACTTATGTTTTGTAATTATGGGTTCCTTTTATTTATCAGATTGAAGGAATTAAAGCAAATGGTTAGAGTTCTTAGACACCCTAAATTCCAGGCAGACCCCTTGGGATCTATACAACTACATTTAGAGGCCACACAACCAGTTGAGGAACCGAAGAAAAAGAAGAGGAATATAAATGGGAGCAAGAAAAGGAAAGAGGAGAAGTTGAAAGCCTGTACAAGACCTTCTCCTATGGAGATGTGACTGATCTCTCACAACCCTTGTCAGTTGTAGCTTGGTGAATATATTTATGGGCATTTTAATTGGTAGCACAGTTCAGCTCCCTTGAGATCTAAATTCCTCCTTCCTTTGGTAGCTATAGGAGGAATCTCTTTTGATTCCAGTAGATGATTATTGTTGATGAAGCAATTGTTCAACTAGTCATGTTCCATAAGATTATGCATTTTCAAACTATTTTAGATATTATAATCAATCCACAGTTAACATTGTGATTTTACTCGCACAGTTATATGACCCCAT

mRNA sequence

ATGAATCCTCTGAAAGCAGGTTACAAGGCTCTTGAACTTATAGAACGCGACATCCTCACTCAAAGTCAAAATTCATCCCCCTGTTTTCATCTGCATGCTGGATTCCCTAAACTATGTCAAACTGCGCAAAAGAAATGCTTGCAGATGCCCAAGCCAATTTTCAGTCTGAACCTCTCATTGAAGGAATTAAAGCAAATGGTTAGAGTTCTTAGACACCCTAAATTCCAGGCAGACCCCTTGGGATCTATACAACTACATTTAGAGGCCACACAACCAGTTGAGGAACCGAAGAAAAAGAAGAGGAATATAAATGGGAGCAAGAAAAGGAAAGAGGAGAAGTTGAAAGCCTGTACAAGACCTTCTCCTATGGAGATGTGACTGATCTCTCACAACCCTTGTCAGTTGTAGCTTGGTGAATATATTTATGGGCATTTTAATTGGTAGCACAGTTCAGCTCCCTTGAGATCTAAATTCCTCCTTCCTTTGGTAGCTATAGGAGGAATCTCTTTTGATTCCAGTAGATGATTATTGTTGATGAAGCAATTGTTCAACTAGTCATGTTCCATAAGATTATGCATTTTCAAACTATTTTAGATATTATAATCAATCCACAGTTAACATTGTGATTTTACTCGCACAGTTATATGACCCCAT

Coding sequence (CDS)

ATGAATCCTCTGAAAGCAGGTTACAAGGCTCTTGAACTTATAGAACGCGACATCCTCACTCAAAGTCAAAATTCATCCCCCTGTTTTCATCTGCATGCTGGATTCCCTAAACTATGTCAAACTGCGCAAAAGAAATGCTTGCAGATGCCCAAGCCAATTTTCAGTCTGAACCTCTCATTGAAGGAATTAAAGCAAATGGTTAGAGTTCTTAGACACCCTAAATTCCAGGCAGACCCCTTGGGATCTATACAACTACATTTAGAGGCCACACAACCAGTTGAGGAACCGAAGAAAAAGAAGAGGAATATAAATGGGAGCAAGAAAAGGAAAGAGGAGAAGTTGAAAGCCTGTACAAGACCTTCTCCTATGGAGATGTGA

Protein sequence

MNPLKAGYKALELIERDILTQSQNSSPCFHLHAGFPKLCQTAQKKCLQMPKPIFSLNLSLKELKQMVRVLRHPKFQADPLGSIQLHLEATQPVEEPKKKKRNINGSKKRKEEKLKACTRPSPMEM

Homology

[Close]

BLAST of CcUC04G080390 vs. NCBI nr
Match: XP_023515417.1 (putative ribosome biogenesis protein slx9-like [Cucurbita pepo subsp. pepo] >XP_023515418.1 putative ribosome biogenesis protein slx9-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 95.1 bits (235), Expect = 4.5e-16
Identity = 51/70 (72.86%), Postives = 55/70 (78.57%), Query Frame = 0


Query: 56  LNLSLKELKQMVRVLRHPKFQADPLGSIQLHLEATQPVEEPKKKKRNINGSKKRKEEKLK 115
           L   LKE KQM  VL HP FQADPLG+I LHLE+TQPVEEPKKKK N NGSKKRKE+K K
Sbjct: 88  LKFVLKETKQMGTVLNHPAFQADPLGAIHLHLESTQPVEEPKKKKTNRNGSKKRKEKKSK 147

Query: 116 ACTRPSPMEM 126
           A  +PS MEM
Sbjct: 148 ATAKPSSMEM 157

[Close]

BLAST of CcUC04G080390 vs. NCBI nr
Match: KAA0037498.1 (putative ribosome biogenesis protein slx9-like [Cucumis melo var. makuwa] >TYK01973.1 putative ribosome biogenesis protein slx9-like [Cucumis melo var. makuwa])

HSP 1 Score: 94.4 bits (233), Expect = 7.6e-16
Identity = 51/70 (72.86%), Postives = 54/70 (77.14%), Query Frame = 0


Query: 56  LNLSLKELKQMVRVLRHPKFQADPLGSIQLHLEATQPVEEPKKKKRNINGSKKRKEEKLK 115
           L   LKE KQM  VL HP FQADPL ++QLHLE TQP EEPKKKK N NGSKKRKE+KLK
Sbjct: 89  LKFILKERKQMGTVLNHPVFQADPLRAVQLHLEGTQPTEEPKKKKMNKNGSKKRKEKKLK 148

Query: 116 ACTRPSPMEM 126
           A  RPS MEM
Sbjct: 149 ASARPSSMEM 158

[Close]

BLAST of CcUC04G080390 vs. NCBI nr
Match: KAG7023365.1 (hypothetical protein SDJN02_14390 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 92.8 bits (229), Expect = 2.2e-15
Identity = 50/68 (73.53%), Postives = 54/68 (79.41%), Query Frame = 0


Query: 58  LSLKELKQMVRVLRHPKFQADPLGSIQLHLEATQPVEEPKKKKRNINGSKKRKEEKLKAC 117
           L LKE KQM  VL HP FQADPLG+I LHLE+TQPVEE KKKK N NGSKKRKE+K KA 
Sbjct: 114 LKLKETKQMGTVLNHPAFQADPLGAIHLHLESTQPVEETKKKKTNRNGSKKRKEKKSKAT 173

Query: 118 TRPSPMEM 126
            +PS MEM
Sbjct: 174 AKPSSMEM 181

[Close]

BLAST of CcUC04G080390 vs. NCBI nr
Match: KAA0062508.1 (putative ribosome biogenesis protein slx9-like [Cucumis melo var. makuwa])

HSP 1 Score: 92.4 bits (228), Expect = 2.9e-15
Identity = 50/70 (71.43%), Postives = 54/70 (77.14%), Query Frame = 0


Query: 56  LNLSLKELKQMVRVLRHPKFQADPLGSIQLHLEATQPVEEPKKKKRNINGSKKRKEEKLK 115
           L   LKE KQM  VL HP FQADPL ++QLHLE TQP+EEPKKKK N NGSKKRKE+K K
Sbjct: 297 LKFILKERKQMGTVLNHPVFQADPLRAVQLHLEGTQPIEEPKKKKINKNGSKKRKEKKSK 356

Query: 116 ACTRPSPMEM 126
           A  RPS MEM
Sbjct: 357 ALARPSSMEM 366

[Close]

BLAST of CcUC04G080390 vs. NCBI nr
Match: XP_016900348.1 (PREDICTED: putative ribosome biogenesis protein slx9-like, partial [Cucumis melo])

HSP 1 Score: 92.4 bits (228), Expect = 2.9e-15
Identity = 50/70 (71.43%), Postives = 54/70 (77.14%), Query Frame = 0


Query: 56  LNLSLKELKQMVRVLRHPKFQADPLGSIQLHLEATQPVEEPKKKKRNINGSKKRKEEKLK 115
           L   LKE KQM  VL HP FQADPL ++QLHLE TQP+EEPKKKK N NGSKKRKE+K K
Sbjct: 65  LKFILKERKQMGTVLNHPVFQADPLRAVQLHLEGTQPIEEPKKKKINKNGSKKRKEKKSK 124

Query: 116 ACTRPSPMEM 126
           A  RPS MEM
Sbjct: 125 ALARPSSMEM 134

[Close]

BLAST of CcUC04G080390 vs. ExPASy TrEMBL
Match: A0A5D3BQL6 (Putative ribosome biogenesis protein slx9-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold808G00780 PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 3.7e-16
Identity = 51/70 (72.86%), Postives = 54/70 (77.14%), Query Frame = 0


Query: 56  LNLSLKELKQMVRVLRHPKFQADPLGSIQLHLEATQPVEEPKKKKRNINGSKKRKEEKLK 115
           L   LKE KQM  VL HP FQADPL ++QLHLE TQP EEPKKKK N NGSKKRKE+KLK
Sbjct: 89  LKFILKERKQMGTVLNHPVFQADPLRAVQLHLEGTQPTEEPKKKKMNKNGSKKRKEKKLK 148

Query: 116 ACTRPSPMEM 126
           A  RPS MEM
Sbjct: 149 ASARPSSMEM 158

[Close]

BLAST of CcUC04G080390 vs. ExPASy TrEMBL
Match: A0A5A7V4K7 (Putative ribosome biogenesis protein slx9-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold130G001080 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 1.4e-15
Identity = 50/70 (71.43%), Postives = 54/70 (77.14%), Query Frame = 0


Query: 56  LNLSLKELKQMVRVLRHPKFQADPLGSIQLHLEATQPVEEPKKKKRNINGSKKRKEEKLK 115
           L   LKE KQM  VL HP FQADPL ++QLHLE TQP+EEPKKKK N NGSKKRKE+K K
Sbjct: 297 LKFILKERKQMGTVLNHPVFQADPLRAVQLHLEGTQPIEEPKKKKINKNGSKKRKEKKSK 356

Query: 116 ACTRPSPMEM 126
           A  RPS MEM
Sbjct: 357 ALARPSSMEM 366

[Close]

BLAST of CcUC04G080390 vs. ExPASy TrEMBL
Match: A0A1S4DWK8 (putative ribosome biogenesis protein slx9-like OS=Cucumis melo OX=3656 GN=LOC103491493 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 1.4e-15
Identity = 50/70 (71.43%), Postives = 54/70 (77.14%), Query Frame = 0


Query: 56  LNLSLKELKQMVRVLRHPKFQADPLGSIQLHLEATQPVEEPKKKKRNINGSKKRKEEKLK 115
           L   LKE KQM  VL HP FQADPL ++QLHLE TQP+EEPKKKK N NGSKKRKE+K K
Sbjct: 65  LKFILKERKQMGTVLNHPVFQADPLRAVQLHLEGTQPIEEPKKKKINKNGSKKRKEKKSK 124

Query: 116 ACTRPSPMEM 126
           A  RPS MEM
Sbjct: 125 ALARPSSMEM 134

[Close]

BLAST of CcUC04G080390 vs. ExPASy TrEMBL
Match: A0A6J1JDX4 (putative ribosome biogenesis protein slx9-like OS=Cucurbita maxima OX=3661 GN=LOC111484925 PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 1.8e-15
Identity = 50/70 (71.43%), Postives = 54/70 (77.14%), Query Frame = 0


Query: 56  LNLSLKELKQMVRVLRHPKFQADPLGSIQLHLEATQPVEEPKKKKRNINGSKKRKEEKLK 115
           L   LKE KQM  VL HP FQADPLG+I LHLE+TQPVEE KKKK N NGSKKRKE+K K
Sbjct: 88  LKFVLKETKQMGTVLNHPAFQADPLGAIHLHLESTQPVEETKKKKTNRNGSKKRKEKKSK 147

Query: 116 ACTRPSPMEM 126
           A  +PS MEM
Sbjct: 148 ATAKPSSMEM 157

[Close]

BLAST of CcUC04G080390 vs. ExPASy TrEMBL
Match: A0A0A0L113 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G442590 PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 1.8e-15
Identity = 49/70 (70.00%), Postives = 54/70 (77.14%), Query Frame = 0


Query: 56  LNLSLKELKQMVRVLRHPKFQADPLGSIQLHLEATQPVEEPKKKKRNINGSKKRKEEKLK 115
           L   LKE KQM  VL HP FQADPL ++QLHLE TQP+EEPKKKK N NGSKKRKE+K K
Sbjct: 89  LKFILKERKQMGTVLNHPVFQADPLRAVQLHLEGTQPIEEPKKKKMNKNGSKKRKEKKSK 148

Query: 116 ACTRPSPMEM 126
           A  +PS MEM
Sbjct: 149 ASAKPSSMEM 158

[Close]

BLAST of CcUC04G080390 vs. TAIR 10
Match: AT2G01640.1 (unknown protein; Has 51 Blast hits to 51 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 2; Plants - 41; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink). )

HSP 1 Score: 55.5 bits (132), Expect = 3.7e-08
Identity = 37/74 (50.00%), Postives = 47/74 (63.51%), Query Frame = 0


Query: 49  MPKPIFSLN------LSLKELKQMVRVLRHPKFQADPLGSIQLHLEATQ-PVEEPKKKKR 108
           +P P   +N      L L E +++ +VL HP FQADP+GSI  HL + Q PVEE  KKK 
Sbjct: 77  LPAPELKMNCKRRQKLVLTEGERLNKVLDHPAFQADPVGSIFQHLLSQQPPVEEKPKKKT 136

Query: 109 NINGSKKRKEEKLK 116
           N NGSKKR ++K K
Sbjct: 137 NTNGSKKRNKKKGK 150

[Close]

BLAST of CcUC04G080390 vs. TAIR 10
Match: AT2G01640.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages. )

HSP 1 Score: 55.5 bits (132), Expect = 3.7e-08
Identity = 37/74 (50.00%), Postives = 47/74 (63.51%), Query Frame = 0


Query: 49  MPKPIFSLN------LSLKELKQMVRVLRHPKFQADPLGSIQLHLEATQ-PVEEPKKKKR 108
           +P P   +N      L L E +++ +VL HP FQADP+GSI  HL + Q PVEE  KKK 
Sbjct: 77  LPAPELKMNCKRRQKLVLTEGERLNKVLDHPAFQADPVGSIFQHLLSQQPPVEEKPKKKT 136

Query: 109 NINGSKKRKEEKLK 116
           N NGSKKR ++K K
Sbjct: 137 NTNGSKKRNKKKGK 150

The following BLAST results are available for this feature:

BLAST of CcUC04G080390 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023515417.1	4.5e-16	72.86	putative ribosome biogenesis protein slx9-like [Cucurbita pepo subsp. pepo] >XP_...	[more]
KAA0037498.1	7.6e-16	72.86	putative ribosome biogenesis protein slx9-like [Cucumis melo var. makuwa] >TYK01...	[more]
KAG7023365.1	2.2e-15	73.53	hypothetical protein SDJN02_14390 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAA0062508.1	2.9e-15	71.43	putative ribosome biogenesis protein slx9-like [Cucumis melo var. makuwa]	[more]
XP_016900348.1	2.9e-15	71.43	PREDICTED: putative ribosome biogenesis protein slx9-like, partial [Cucumis melo...	[more]

BLAST of CcUC04G080390 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CcUC04G080390 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BQL6	3.7e-16	72.86	Putative ribosome biogenesis protein slx9-like OS=Cucumis melo var. makuwa OX=11...	[more]
A0A5A7V4K7	1.4e-15	71.43	Putative ribosome biogenesis protein slx9-like OS=Cucumis melo var. makuwa OX=11...	[more]
A0A1S4DWK8	1.4e-15	71.43	putative ribosome biogenesis protein slx9-like OS=Cucumis melo OX=3656 GN=LOC103...	[more]
A0A6J1JDX4	1.8e-15	71.43	putative ribosome biogenesis protein slx9-like OS=Cucurbita maxima OX=3661 GN=LO...	[more]
A0A0A0L113	1.8e-15	70.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G442590 PE=4 SV=1	[more]

BLAST of CcUC04G080390 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G01640.1	3.7e-08	50.00	unknown protein; Has 51 Blast hits to 51 proteins in 21 species: Archae - 0; Bac...	[more]
AT2G01640.2	3.7e-08	50.00	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 91..119
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 88..125

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CcUC04G080390.1	CcUC04G080390.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0030684	preribosome