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CcUC04G078660.1 (mRNA) Watermelon (PI 537277) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TTGAGAAGGGACAGTTGTTTGTATTGTTGCTCGCTTCACCTCTCCAGAGCAGGCTTCCTTCGCCTTTCCCACAAAACAAAGAAAGGGTAAAGTTCAAAAACCAAAAAAACACTGCTCCGATAAAAAAGAAAAGATTTTTACAGTGTGTGAGAGAGAAAATCTTGCGATCTGAAGAAAACAAGAACCTCTCTCTCTCTCTCTTCTCCACGGCTGGAGGGCTTCTGAAAAATGTCTGCCTATAGAGCTGAAGATGACTATGACTATCTCTTCAAGGTCGTCTTAATCGGAGATTCTGGCGTTGGCAAGTCCAATTTGCTTTCCCGCTTTACCAAAAACGAGTTCAGCCTCGAATCTAAGTCTACTATTGGGGTTGAGTTTGCTACTCGCAGTTTGAATCTTGATGGCAAGGTTATTAAGGCTCAGATTTGGGACACTGCTGGCCAAGAACGGTGATTTTTCCCCCTCCCTGCTTTTATTCCCTTTCTATGTTTCCGATTTCACATTTTATGATCTGGGTCCTTGTCTTTTATGGTGGAAATATGGTGTCACATATGGGGCTCTGCCTTTGTTTTATTGTTTCTCTTTCTTTTGCTTCTACTGATTTTGAAATGTACCTGCCCCTAATATAATTGCTTTTTAAGCTTCGATTAGCAATTTTCATCTTTGATTGGTTTAGATTATGTTTGTTCATTTTGTTTATATGGTTCGATAGGTTAGTTGTTGATTGCAATGGGGTACCAGACGGGTTTGGTGGATCTAAACTACAAGTGGTCTGTTAGAGCTTACAATACTTTATATCTAACCGGATGTTGCCTTCCCTTGTCATTTACCCCCACATCAAAACCTCAATTCACACTATATAGGTCGATTGTCCTTTCTAGTTTTTCCATGAGGGGGAGGGGTGGAGGGGTATCAATATGAGTTGAAAATGTAAGTAAAATGTGGAAACGTTGTTAATTTTGAAAATTGAAGTGTACTGTCAAGAGGTTGAGAGATATTTTAGGAGAAAATTGAGTTCTGTTTTGTTGTTTAATTTGCATCAGTACTTAACACCTAAATCACAGACATCCTATCGCTTTCGTGATAGATGCTACCTTGTCCTATAAAATTGCACAGAGAAAGAAACAAGAGAAATAGCAAATCGAGCCTTGGTTATGCGCATGCTAGAAACATGTCTGGAGGCCCTTTCCTTTGGATGGTAATTCAGGCATTACATGCTTGTTGGTACGAATTGCACAAGCAGATGCACCCAAAGTTCTCGAGTATGTTGGAAGATTGATCAGCTGTAATGTCCATTTTCAAAAAGTTTACTGTTCCTTAACTTTTCTCTTCCAAATAATTGTCTTTCCATTTTTAGCAACTGTGTTAGGTTATTCTGCCTCTATCGTAGAAGTGATTGAGTTTTGGTTTATTAATTTTGAGAAAAGTTCACCTCTTCAATTAGTGTTTGGGGTCGAGAGAGCAGAGGAATATCAAGTGGTATATCAAACTCATGTTACAGTAAATCTGTTGAACTGGTTTTAAGGAATCGTGTCTCTATGTGAAGATCTATTGAGGAACCAATGGACCTTACACTCTTCATAAGATAGATGAGCTACTCCTCTCATTGCCAATTAGTTTTGAGATGGAACCTCATATTATCAAATAAAATATAATTCAAAGTTCGATGCATATCTCCTATCAATGTAGAGATTGTTGACATGGAGTTTTAATTTATAAAATATATGAGACTGTTTCACCTCTTTTACTAGTTTATGAGGTCGACAGAACCCAATTGTGCTAACATCTTGGATGTTCTGCAGCAATAAGATTTATCTCTATTGTTTTGTTTATCTGGAAAAAGTGGCTTGAGACTCATTTTAACGATTGAGGAATGGCTGTAAGATAGTTGTCACATTTGGCACCTTAAGGCGAGCAAATTAGGATGCAATTGGAAAAGTTACCTTTAATACCTGTATATATCTCACTTATTGTTGGAGTTAACAAACTTTTTCTGTACTGAATGGTAGGTTTACTTGTGTGACAGACTTTTAACTTTGTTTGGTCTTGAAAACTATCTTTACTTGCCGTACTTTTCCACGTATCTCTTCTGGCATCTTAACTTCTCAAGTTCACAGGTATAGAGCGATTACAAGTGCTTACTATCGAGGAGCAGTTGGTGCCCTTCTTGTTTACGATGTTACACGACACTCCACATATGAAAATGTTGAGAAGTGGTTGAAGGAGTTGAGAGATCATACAGATCCCAACATTGTAGTAATGCTAGTTGGGAACAAATCAGATCTTCGCCACCTTGTGGCGGTGTCAACCGAGGATGCAAAATCATTTGCCGAGACAGAGTCCCTCTATTTCATGGAAACCTCTGCCCTTGAAGCCACAAATGTGGACAACGCCTTTGCCGAAGTGCTTACACAAATTTACCACATAGTGAGCAAGAAGGCTATAGAAGCTAGCGATGATGCTGCTGCATCAGCCGTTCTAGCGAAAGGGGAGAAAATCGATATCAGTAAGGACGTCTCTGAGGTAAAGAAAGGCGGTTGCTGTTCCAGCTAGACTACCAATCTCTAAAGTTGCTGCAGCAGCCTGAAGGTCATCTCCTCGCTCGACATCTATTTTACATTTTGTTTTACATATAGTACACCGTGGCCGTGTGAAATTTTTTTCCGGGGATGCATAGAGGTAGGGGGTTCATGGGGATTGATTTGATGTATCCTACTGTTTTGATTACTGATATCTTAACTTCTGATGCCAAAAATATGCTTAAGCTTTATACTCATTTGACTTTGGGGAATTACAGTTTTATACTCATTTGACTTTGAGGGACTTTGTATCCAAGTACAGAATTGTTGTGGCTCTTAGTTTCGAAACTCCAAGGTTTCTCTTATCTCTTGTGTGAACTATGCATATAAGAAAGATCTGTTGTGGTATTTTCTCCTTCCCC TTGAGAAGGGACAGTTGTTTGTATTGTTGCTCGCTTCACCTCTCCAGAGCAGGCTTCCTTCGCCTTTCCCACAAAACAAAGAAAGGGTAAAGTTCAAAAACCAAAAAAACACTGCTCCGATAAAAAAGAAAAGATTTTTACAGTGTGTGAGAGAGAAAATCTTGCGATCTGAAGAAAACAAGAACCTCTCTCTCTCTCTCTTCTCCACGGCTGGAGGGCTTCTGAAAAATGTCTGCCTATAGAGCTGAAGATGACTATGACTATCTCTTCAAGGTCGTCTTAATCGGAGATTCTGGCGTTGGCAAGTCCAATTTGCTTTCCCGCTTTACCAAAAACGAGTTCAGCCTCGAATCTAAGTCTACTATTGGGGTTGAGTTTGCTACTCGCAGTTTGAATCTTGATGGCAAGGTTATTAAGGCTCAGATTTGGGACACTGCTGGCCAAGAACGGAGGCCCTTTCCTTTGGATGGTAATTCAGGCATTACATGCTTGTTGGTACGAATTGCACAAGCAGATGCACCCAAAGTTCTCGAGTATAGAGCGATTACAAGTGCTTACTATCGAGGAGCAGTTGGTGCCCTTCTTGTTTACGATGTTACACGACACTCCACATATGAAAATGTTGAGAAGTGGTTGAAGGAGTTGAGAGATCATACAGATCCCAACATTGTAGTAATGCTAGTTGGGAACAAATCAGATCTTCGCCACCTTGTGGCGGTGTCAACCGAGGATGCAAAATCATTTGCCGAGACAGAGTCCCTCTATTTCATGGAAACCTCTGCCCTTGAAGCCACAAATGTGGACAACGCCTTTGCCGAAGTGCTTACACAAATTTACCACATAGTGAGCAAGAAGGCTATAGAAGCTAGCGATGATGCTGCTGCATCAGCCGTTCTAGCGAAAGGGGAGAAAATCGATATCAGTAAGGACGTCTCTGAGGTAAAGAAAGGCGGTTGCTGTTCCAGCTAGACTACCAATCTCTAAAGTTGCTGCAGCAGCCTGAAGGTCATCTCCTCGCTCGACATCTATTTTACATTTTGTTTTACATATAGTACACCGTGGCCGTGTGAAATTTTTTTCCGGGGATGCATAGAGGTAGGGGGTTCATGGGGATTGATTTGATGTATCCTACTGTTTTGATTACTGATATCTTAACTTCTGATGCCAAAAATATGCTTAAGCTTTATACTCATTTGACTTTGGGGAATTACAGTTTTATACTCATTTGACTTTGAGGGACTTTGTATCCAAGTACAGAATTGTTGTGGCTCTTAGTTTCGAAACTCCAAGGTTTCTCTTATCTCTTGTGTGAACTATGCATATAAGAAAGATCTGTTGTGGTATTTTCTCCTTCCCC ATGTCTGCCTATAGAGCTGAAGATGACTATGACTATCTCTTCAAGGTCGTCTTAATCGGAGATTCTGGCGTTGGCAAGTCCAATTTGCTTTCCCGCTTTACCAAAAACGAGTTCAGCCTCGAATCTAAGTCTACTATTGGGGTTGAGTTTGCTACTCGCAGTTTGAATCTTGATGGCAAGGTTATTAAGGCTCAGATTTGGGACACTGCTGGCCAAGAACGGAGGCCCTTTCCTTTGGATGGTAATTCAGGCATTACATGCTTGTTGGTACGAATTGCACAAGCAGATGCACCCAAAGTTCTCGAGTATAGAGCGATTACAAGTGCTTACTATCGAGGAGCAGTTGGTGCCCTTCTTGTTTACGATGTTACACGACACTCCACATATGAAAATGTTGAGAAGTGGTTGAAGGAGTTGAGAGATCATACAGATCCCAACATTGTAGTAATGCTAGTTGGGAACAAATCAGATCTTCGCCACCTTGTGGCGGTGTCAACCGAGGATGCAAAATCATTTGCCGAGACAGAGTCCCTCTATTTCATGGAAACCTCTGCCCTTGAAGCCACAAATGTGGACAACGCCTTTGCCGAAGTGCTTACACAAATTTACCACATAGTGAGCAAGAAGGCTATAGAAGCTAGCGATGATGCTGCTGCATCAGCCGTTCTAGCGAAAGGGGAGAAAATCGATATCAGTAAGGACGTCTCTGAGGTAAAGAAAGGCGGTTGCTGTTCCAGCTAG MSAYRAEDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSLNLDGKVIKAQIWDTAGQERRPFPLDGNSGITCLLVRIAQADAPKVLEYRAITSAYYRGAVGALLVYDVTRHSTYENVEKWLKELRDHTDPNIVVMLVGNKSDLRHLVAVSTEDAKSFAETESLYFMETSALEATNVDNAFAEVLTQIYHIVSKKAIEASDDAAASAVLAKGEKIDISKDVSEVKKGGCCSS Homology
BLAST of CcUC04G078660.1 vs. NCBI nr
Match: XP_038892728.1 (ras-related protein RABA1c-like [Benincasa hispida]) HSP 1 Score: 404.1 bits (1037), Expect = 8.9e-109 Identity = 216/246 (87.80%), Postives = 218/246 (88.62%), Query Frame = 0
BLAST of CcUC04G078660.1 vs. NCBI nr
Match: XP_004134652.1 (ras-related protein RABA1c [Cucumis sativus] >XP_008439722.1 PREDICTED: ras-related protein RABA1c-like [Cucumis melo] >ADN34029.1 GTP-binding protein [Cucumis melo subsp. melo] >KAA0052607.1 ras-related protein RABA1c [Cucumis melo var. makuwa] >KGN49321.1 hypothetical protein Csa_002721 [Cucumis sativus] >TYK13220.1 ras-related protein RABA1c [Cucumis melo var. makuwa]) HSP 1 Score: 401.7 bits (1031), Expect = 4.4e-108 Identity = 214/246 (86.99%), Postives = 217/246 (88.21%), Query Frame = 0
BLAST of CcUC04G078660.1 vs. NCBI nr
Match: XP_022926120.1 (ras-related protein RABA1c-like [Cucurbita moschata] >XP_022978763.1 ras-related protein RABA1c-like [Cucurbita maxima] >XP_023544519.1 ras-related protein RABA1c-like [Cucurbita pepo subsp. pepo] >KAG6581369.1 Ras-related protein RABA1c, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 400.6 bits (1028), Expect = 9.8e-108 Identity = 213/246 (86.59%), Postives = 217/246 (88.21%), Query Frame = 0
BLAST of CcUC04G078660.1 vs. NCBI nr
Match: XP_022142300.1 (ras-related protein RABA1c [Momordica charantia]) HSP 1 Score: 398.3 bits (1022), Expect = 4.9e-107 Identity = 213/246 (86.59%), Postives = 216/246 (87.80%), Query Frame = 0
BLAST of CcUC04G078660.1 vs. NCBI nr
Match: XP_023518462.1 (ras-related protein RABA1c-like [Cucurbita pepo subsp. pepo] >KAG7026514.1 Ras-related protein RABA1c, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 385.2 bits (988), Expect = 4.3e-103 Identity = 202/246 (82.11%), Postives = 214/246 (86.99%), Query Frame = 0
BLAST of CcUC04G078660.1 vs. ExPASy Swiss-Prot
Match: Q9FK68 (Ras-related protein RABA1c OS=Arabidopsis thaliana OX=3702 GN=RABA1C PE=1 SV=1) HSP 1 Score: 356.3 bits (913), Expect = 2.8e-97 Identity = 191/246 (77.64%), Postives = 206/246 (83.74%), Query Frame = 0
BLAST of CcUC04G078660.1 vs. ExPASy Swiss-Prot
Match: P40393 (Ras-related protein RIC2 OS=Oryza sativa subsp. japonica OX=39947 GN=RIC2 PE=2 SV=2) HSP 1 Score: 349.0 bits (894), Expect = 4.4e-95 Identity = 184/244 (75.41%), Postives = 200/244 (81.97%), Query Frame = 0
BLAST of CcUC04G078660.1 vs. ExPASy Swiss-Prot
Match: Q9SN35 (Ras-related protein RABA1d OS=Arabidopsis thaliana OX=3702 GN=RABA1D PE=1 SV=1) HSP 1 Score: 347.4 bits (890), Expect = 1.3e-94 Identity = 186/246 (75.61%), Postives = 204/246 (82.93%), Query Frame = 0
BLAST of CcUC04G078660.1 vs. ExPASy Swiss-Prot
Match: Q01111 (Ras-related protein YPT3 OS=Nicotiana plumbaginifolia OX=4092 GN=YPT3 PE=2 SV=1) HSP 1 Score: 335.9 bits (860), Expect = 3.9e-91 Identity = 177/246 (71.95%), Postives = 194/246 (78.86%), Query Frame = 0
BLAST of CcUC04G078660.1 vs. ExPASy Swiss-Prot
Match: Q39222 (Ras-related protein RABA1b OS=Arabidopsis thaliana OX=3702 GN=RABA1B PE=1 SV=1) HSP 1 Score: 330.9 bits (847), Expect = 1.3e-89 Identity = 175/246 (71.14%), Postives = 197/246 (80.08%), Query Frame = 0
BLAST of CcUC04G078660.1 vs. ExPASy TrEMBL
Match: A0A5D3CP64 (Ras-related protein RABA1c OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G008350 PE=4 SV=1) HSP 1 Score: 401.7 bits (1031), Expect = 2.1e-108 Identity = 214/246 (86.99%), Postives = 217/246 (88.21%), Query Frame = 0
BLAST of CcUC04G078660.1 vs. ExPASy TrEMBL
Match: E5GC30 (GTP-binding protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1) HSP 1 Score: 401.7 bits (1031), Expect = 2.1e-108 Identity = 214/246 (86.99%), Postives = 217/246 (88.21%), Query Frame = 0
BLAST of CcUC04G078660.1 vs. ExPASy TrEMBL
Match: A0A0A0KNM1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G519720 PE=4 SV=1) HSP 1 Score: 401.7 bits (1031), Expect = 2.1e-108 Identity = 214/246 (86.99%), Postives = 217/246 (88.21%), Query Frame = 0
BLAST of CcUC04G078660.1 vs. ExPASy TrEMBL
Match: A0A1S3B019 (ras-related protein RABA1c-like OS=Cucumis melo OX=3656 GN=LOC103484436 PE=4 SV=1) HSP 1 Score: 401.7 bits (1031), Expect = 2.1e-108 Identity = 214/246 (86.99%), Postives = 217/246 (88.21%), Query Frame = 0
BLAST of CcUC04G078660.1 vs. ExPASy TrEMBL
Match: A0A6J1IU78 (ras-related protein RABA1c-like OS=Cucurbita maxima OX=3661 GN=LOC111478625 PE=4 SV=1) HSP 1 Score: 400.6 bits (1028), Expect = 4.8e-108 Identity = 213/246 (86.59%), Postives = 217/246 (88.21%), Query Frame = 0
BLAST of CcUC04G078660.1 vs. TAIR 10
Match: AT5G45750.1 (RAB GTPase homolog A1C ) HSP 1 Score: 356.3 bits (913), Expect = 2.0e-98 Identity = 191/246 (77.64%), Postives = 206/246 (83.74%), Query Frame = 0
BLAST of CcUC04G078660.1 vs. TAIR 10
Match: AT4G18800.1 (RAB GTPase homolog A1D ) HSP 1 Score: 347.4 bits (890), Expect = 9.2e-96 Identity = 186/246 (75.61%), Postives = 204/246 (82.93%), Query Frame = 0
BLAST of CcUC04G078660.1 vs. TAIR 10
Match: AT1G16920.1 (RAB GTPase homolog A1B ) HSP 1 Score: 330.9 bits (847), Expect = 8.9e-91 Identity = 175/246 (71.14%), Postives = 197/246 (80.08%), Query Frame = 0
BLAST of CcUC04G078660.1 vs. TAIR 10
Match: AT3G15060.1 (RAB GTPase homolog A1G ) HSP 1 Score: 319.3 bits (817), Expect = 2.7e-87 Identity = 169/248 (68.15%), Postives = 195/248 (78.63%), Query Frame = 0
BLAST of CcUC04G078660.1 vs. TAIR 10
Match: AT5G60860.1 (RAB GTPase homolog A1F ) HSP 1 Score: 318.9 bits (816), Expect = 3.5e-87 Identity = 169/248 (68.15%), Postives = 196/248 (79.03%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
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