Carg25232-RA (mRNA) Silver-seed gourd (SMH-JMG-627) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGTGTGGCTTAAATTCACCAACGCGCTGTTTTTGATTGTTCGATTCGACGGTTTTGGGCCTTGATTTCCACAGAAGAACAGGGCTTTCAATTGGTGAGTTTCCTCCGTCATTTTATCTCCACTTTTTTTCTTATACATGGAATATTGTTTAATCGAGTTTCAAATAGTTTGATGTGTTGAGAACTTGAAAATCCAGTTTAGTTTGTCTGAATCTCTTTGGTACGAGGCCATTTGAAGAAATCGAAAGCAAAACTATGAAAGTACAGTAGTGATTCCTAGAACTTAACCTAATCTGTGCTGTAAACTGGATTCTCATTTCTTCCTAAATTGGCTGGGAATGCTGTGCTAGTTGTTCTTCATGGGAGAAGTATTTAAGCCTTCTTCCATTGGATAGGAGAGAACTTTCTCTGTGAACAGAGGGTAGATGAAGCTCTGATTGTGCCTTGAAAAATATAGTTTAAACCATGGTTTCACTTGCACCATCCATACACATTGATGCTCAAGCTCTTTCTTGTCTGTCCATCAAGTGTTTAATCAAAATTAACTTATAAAATCTATGTACTCTTGATATGAAACAACTGAATTTCATTTATCTCTTGTGTTGATGCCATATATCAAATCACTGTTAAACAACTTTTGCGTTGTTAATGTGTGATCGTACATCGGTTGTGGAGGAGAACGAATCACTCTTTATAAGGGTGTGAAATCCTCTCCCTAGCAAACACATTTTAAAAACCTTGAGGGGAAGTTTAGAAGGGAAAGCCCAAAGATGACAATATTGGCTGATGGTGAGCTTGGACCGTTACAAATGCACATCGCCCTGTGTATGGCTTTGATACCATGTGTAACATCTTCTCTTTCGCTTTAAGATCCATGAGATTCAGAGAGTTAGATAAAGTCTTACTGGGTGGGAGCTCTATCTACTCGTCTAGGCTGAGTGGCATCTATTAAGAAGGCCGGGATTCTCTCAAAATAGAATGATTAATATCCATAGAGATGGCTACGTCCCAGTTCTTCTCTTGTATGAATGAAGGCCGTTTCGTTCAAGACCTTATCTCGTATGAATGAAGACCGTTTCCTTCAAGACCTCTGGCAGGCAAGTCAAGCCATTATAGGCTAGTCCCCTAGATGAAGCAGGAGGAAGGAATGAAGTCGATCTATTTTGGTATTTTCTGATCTTTCTGTGAAAGTTACTTCAAAACTATATCCTAACTATTGACATATCCTTGCCAGAGTGGGAAGGCATGGCAGCACCAGCAACAGCAGAAGTTTGTGATACAAATGCAGGACATATCACAAGCGGAGGTCTCCGAGTACTGCAAGCGTCATTCGAGATTTACGGGACGGATAGTGACGGTGAA ATGGTGTGGCTTAAATTCACCAACGCGCTGTTTTTGATTGTTCGATTCGACGAGTGGGAAGGCATGGCAGCACCAGCAACAGCAGAAGTTTGTGATACAAATGCAGGACATATCACAAGCGGAGGTCTCCGAGTACTGCAAGCGTCATTCGAGATTTACGGGACGGATAGTGACGGTGAA ATGGTGTGGCTTAAATTCACCAACGCGCTGTTTTTGATTGTTCGATTCGACGAGTGGGAAGGCATGGCAGCACCAGCAACAGCAGAAGTTTGTGATACAAATGCAGGACATATCACAAGCGGAGGTCTCCGAGTACTGCAAGCGTCATTCGAGATTTACGGGACGGATAGTGACGGTGAA MVWLKFTNALFLIVRFDEWEGMAAPATAEVCDTNAGHITSGGLRVLQASFEIYGTDSDGE Homology
BLAST of Carg25232-RA vs. NCBI nr
Match: KAG7015603.1 (hypothetical protein SDJN02_23239, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 127.1 bits (318), Expect = 5.1e-26 Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 0
BLAST of Carg25232-RA vs. NCBI nr
Match: KAG6596786.1 (putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 3, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 58.5 bits (140), Expect = 2.2e-05 Identity = 25/35 (71.43%), Postives = 29/35 (82.86%), Query Frame = 0
BLAST of Carg25232-RA vs. NCBI nr
Match: XP_004148273.1 (putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 3 [Cucumis sativus] >XP_004148274.1 putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 3 [Cucumis sativus] >XP_011650460.1 putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 3 [Cucumis sativus] >XP_031739443.1 putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 3 [Cucumis sativus] >KGN55987.1 hypothetical protein Csa_009602 [Cucumis sativus]) HSP 1 Score: 57.4 bits (137), Expect = 5.0e-05 Identity = 25/33 (75.76%), Postives = 28/33 (84.85%), Query Frame = 0
BLAST of Carg25232-RA vs. NCBI nr
Match: XP_008448991.1 (PREDICTED: putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 3 [Cucumis melo] >XP_008448992.1 PREDICTED: putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 3 [Cucumis melo] >TYK19391.1 putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 3 [Cucumis melo var. makuwa]) HSP 1 Score: 57.4 bits (137), Expect = 5.0e-05 Identity = 25/33 (75.76%), Postives = 28/33 (84.85%), Query Frame = 0
BLAST of Carg25232-RA vs. NCBI nr
Match: XP_023540534.1 (putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 3 [Cucurbita pepo subsp. pepo] >XP_023540535.1 putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 3 [Cucurbita pepo subsp. pepo] >KAG7028314.1 putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 3, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 56.6 bits (135), Expect = 8.5e-05 Identity = 24/33 (72.73%), Postives = 28/33 (84.85%), Query Frame = 0
BLAST of Carg25232-RA vs. ExPASy TrEMBL
Match: A0A1S3BKF1 (4-hydroxy-4-methyl-2-oxoglutarate aldolase OS=Cucumis melo OX=3656 GN=LOC103490998 PE=3 SV=1) HSP 1 Score: 57.4 bits (137), Expect = 2.4e-05 Identity = 25/33 (75.76%), Postives = 28/33 (84.85%), Query Frame = 0
BLAST of Carg25232-RA vs. ExPASy TrEMBL
Match: A0A5D3D743 (4-hydroxy-4-methyl-2-oxoglutarate aldolase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold443G00240 PE=3 SV=1) HSP 1 Score: 57.4 bits (137), Expect = 2.4e-05 Identity = 25/33 (75.76%), Postives = 28/33 (84.85%), Query Frame = 0
BLAST of Carg25232-RA vs. ExPASy TrEMBL
Match: A0A0A0L5X9 (4-hydroxy-4-methyl-2-oxoglutarate aldolase OS=Cucumis sativus OX=3659 GN=Csa_3G044520 PE=3 SV=1) HSP 1 Score: 57.4 bits (137), Expect = 2.4e-05 Identity = 25/33 (75.76%), Postives = 28/33 (84.85%), Query Frame = 0
BLAST of Carg25232-RA vs. ExPASy TrEMBL
Match: A0A6J1GE55 (4-hydroxy-4-methyl-2-oxoglutarate aldolase OS=Cucurbita moschata OX=3662 GN=LOC111453129 PE=3 SV=1) HSP 1 Score: 56.2 bits (134), Expect = 5.4e-05 Identity = 23/33 (69.70%), Postives = 28/33 (84.85%), Query Frame = 0
BLAST of Carg25232-RA vs. ExPASy TrEMBL
Match: A0A6J1CPD0 (4-hydroxy-4-methyl-2-oxoglutarate aldolase OS=Momordica charantia OX=3673 GN=LOC111013332 PE=3 SV=1) HSP 1 Score: 55.1 bits (131), Expect = 1.2e-04 Identity = 23/33 (69.70%), Postives = 28/33 (84.85%), Query Frame = 0
BLAST of Carg25232-RA vs. TAIR 10
Match: AT5G56260.1 (Ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase ) HSP 1 Score: 41.2 bits (95), Expect = 3.4e-04 Identity = 20/33 (60.61%), Postives = 24/33 (72.73%), Query Frame = 0
BLAST of Carg25232-RA vs. TAIR 10
Match: AT3G02770.1 (Ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase ) HSP 1 Score: 40.0 bits (92), Expect = 7.7e-04 Identity = 20/33 (60.61%), Postives = 21/33 (63.64%), Query Frame = 0
BLAST of Carg25232-RA vs. TAIR 10
Match: AT5G16450.1 (Ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase ) HSP 1 Score: 39.7 bits (91), Expect = 1.0e-03 Identity = 20/33 (60.61%), Postives = 21/33 (63.64%), Query Frame = 0
BLAST of Carg25232-RA vs. TAIR 10
Match: AT5G16450.2 (Ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase ) HSP 1 Score: 39.7 bits (91), Expect = 1.0e-03 Identity = 20/33 (60.61%), Postives = 21/33 (63.64%), Query Frame = 0
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
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