Carg25232 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg25232
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description4-hydroxy-4-methyl-2-oxoglutarate aldolase
LocationCarg_Chr16: 7884937 .. 7886299 (+)
RNA-Seq ExpressionCarg25232
SyntenyCarg25232
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGTGGCTTAAATTCACCAACGCGCTGTTTTTGATTGTTCGATTCGACGGTTTTGGGCCTTGATTTCCACAGAAGAACAGGGCTTTCAATTGGTGAGTTTCCTCCGTCATTTTATCTCCACTTTTTTTCTTATACATGGAATATTGTTTAATCGAGTTTCAAATAGTTTGATGTGTTGAGAACTTGAAAATCCAGTTTAGTTTGTCTGAATCTCTTTGGTACGAGGCCATTTGAAGAAATCGAAAGCAAAACTATGAAAGTACAGTAGTGATTCCTAGAACTTAACCTAATCTGTGCTGTAAACTGGATTCTCATTTCTTCCTAAATTGGCTGGGAATGCTGTGCTAGTTGTTCTTCATGGGAGAAGTATTTAAGCCTTCTTCCATTGGATAGGAGAGAACTTTCTCTGTGAACAGAGGGTAGATGAAGCTCTGATTGTGCCTTGAAAAATATAGTTTAAACCATGGTTTCACTTGCACCATCCATACACATTGATGCTCAAGCTCTTTCTTGTCTGTCCATCAAGTGTTTAATCAAAATTAACTTATAAAATCTATGTACTCTTGATATGAAACAACTGAATTTCATTTATCTCTTGTGTTGATGCCATATATCAAATCACTGTTAAACAACTTTTGCGTTGTTAATGTGTGATCGTACATCGGTTGTGGAGGAGAACGAATCACTCTTTATAAGGGTGTGAAATCCTCTCCCTAGCAAACACATTTTAAAAACCTTGAGGGGAAGTTTAGAAGGGAAAGCCCAAAGATGACAATATTGGCTGATGGTGAGCTTGGACCGTTACAAATGCACATCGCCCTGTGTATGGCTTTGATACCATGTGTAACATCTTCTCTTTCGCTTTAAGATCCATGAGATTCAGAGAGTTAGATAAAGTCTTACTGGGTGGGAGCTCTATCTACTCGTCTAGGCTGAGTGGCATCTATTAAGAAGGCCGGGATTCTCTCAAAATAGAATGATTAATATCCATAGAGATGGCTACGTCCCAGTTCTTCTCTTGTATGAATGAAGGCCGTTTCGTTCAAGACCTTATCTCGTATGAATGAAGACCGTTTCCTTCAAGACCTCTGGCAGGCAAGTCAAGCCATTATAGGCTAGTCCCCTAGATGAAGCAGGAGGAAGGAATGAAGTCGATCTATTTTGGTATTTTCTGATCTTTCTGTGAAAGTTACTTCAAAACTATATCCTAACTATTGACATATCCTTGCCAGAGTGGGAAGGCATGGCAGCACCAGCAACAGCAGAAGTTTGTGATACAAATGCAGGACATATCACAAGCGGAGGTCTCCGAGTACTGCAAGCGTCATTCGAGATTTACGGGACGGATAGTGACGGTGAA

mRNA sequence

ATGGTGTGGCTTAAATTCACCAACGCGCTGTTTTTGATTGTTCGATTCGACGAGTGGGAAGGCATGGCAGCACCAGCAACAGCAGAAGTTTGTGATACAAATGCAGGACATATCACAAGCGGAGGTCTCCGAGTACTGCAAGCGTCATTCGAGATTTACGGGACGGATAGTGACGGTGAA

Coding sequence (CDS)

ATGGTGTGGCTTAAATTCACCAACGCGCTGTTTTTGATTGTTCGATTCGACGAGTGGGAAGGCATGGCAGCACCAGCAACAGCAGAAGTTTGTGATACAAATGCAGGACATATCACAAGCGGAGGTCTCCGAGTACTGCAAGCGTCATTCGAGATTTACGGGACGGATAGTGACGGTGAA

Protein sequence

MVWLKFTNALFLIVRFDEWEGMAAPATAEVCDTNAGHITSGGLRVLQASFEIYGTDSDGE
Homology
[Close]
BLAST of Carg25232 vs. NCBI nr
Match: KAG7015603.1 (hypothetical protein SDJN02_23239, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 127.1 bits (318), Expect = 5.1e-26
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 0 

Query: 1  MVWLKFTNALFLIVRFDEWEGMAAPATAEVCDTNAGHITSGGLRVLQASFEIYGTDSDGE 60
          MVWLKFTNALFLIVRFDEWEGMAAPATAEVCDTNAGHITSGGLRVLQASFEIYGTDSDGE
Sbjct: 1  MVWLKFTNALFLIVRFDEWEGMAAPATAEVCDTNAGHITSGGLRVLQASFEIYGTDSDGE 60

[Close]
BLAST of Carg25232 vs. NCBI nr
Match: KAG6596786.1 (putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 3, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 58.5 bits (140), Expect = 2.2e-05
Identity = 25/35 (71.43%), Postives = 29/35 (82.86%), Query Frame = 0 

Query: 20 EGMAAPATAEVCDTNAGHITSGGLRVLQASFEIYG 55
          E MAAPATA++CD NA H+TSG LRVLQ  F+IYG
Sbjct: 12 ESMAAPATADICDANAAHVTSGDLRVLQQKFKIYG 46

[Close]
BLAST of Carg25232 vs. NCBI nr
Match: XP_004148273.1 (putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 3 [Cucumis sativus] >XP_004148274.1 putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 3 [Cucumis sativus] >XP_011650460.1 putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 3 [Cucumis sativus] >XP_031739443.1 putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 3 [Cucumis sativus] >KGN55987.1 hypothetical protein Csa_009602 [Cucumis sativus])

HSP 1 Score: 57.4 bits (137), Expect = 5.0e-05
Identity = 25/33 (75.76%), Postives = 28/33 (84.85%), Query Frame = 0 

Query: 22 MAAPATAEVCDTNAGHITSGGLRVLQASFEIYG 55
          MAAPATA+VCD NA H+T+G LRVLQ  FEIYG
Sbjct: 1  MAAPATADVCDANAAHVTNGDLRVLQPKFEIYG 33

[Close]
BLAST of Carg25232 vs. NCBI nr
Match: XP_008448991.1 (PREDICTED: putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 3 [Cucumis melo] >XP_008448992.1 PREDICTED: putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 3 [Cucumis melo] >TYK19391.1 putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 3 [Cucumis melo var. makuwa])

HSP 1 Score: 57.4 bits (137), Expect = 5.0e-05
Identity = 25/33 (75.76%), Postives = 28/33 (84.85%), Query Frame = 0 

Query: 22 MAAPATAEVCDTNAGHITSGGLRVLQASFEIYG 55
          MAAPATA+VCD NA H+T+G LRVLQ  FEIYG
Sbjct: 1  MAAPATADVCDANAAHVTNGDLRVLQPKFEIYG 33

[Close]
BLAST of Carg25232 vs. NCBI nr
Match: XP_023540534.1 (putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 3 [Cucurbita pepo subsp. pepo] >XP_023540535.1 putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 3 [Cucurbita pepo subsp. pepo] >KAG7028314.1 putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 3, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 56.6 bits (135), Expect = 8.5e-05
Identity = 24/33 (72.73%), Postives = 28/33 (84.85%), Query Frame = 0 

Query: 22 MAAPATAEVCDTNAGHITSGGLRVLQASFEIYG 55
          MAAPATA++CD NA H+TSG LRVLQ  F+IYG
Sbjct: 1  MAAPATADICDANAAHVTSGDLRVLQQKFKIYG 33

[Close]
BLAST of Carg25232 vs. ExPASy TrEMBL
Match: A0A1S3BKF1 (4-hydroxy-4-methyl-2-oxoglutarate aldolase OS=Cucumis melo OX=3656 GN=LOC103490998 PE=3 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 2.4e-05
Identity = 25/33 (75.76%), Postives = 28/33 (84.85%), Query Frame = 0 

Query: 22 MAAPATAEVCDTNAGHITSGGLRVLQASFEIYG 55
          MAAPATA+VCD NA H+T+G LRVLQ  FEIYG
Sbjct: 1  MAAPATADVCDANAAHVTNGDLRVLQPKFEIYG 33

[Close]
BLAST of Carg25232 vs. ExPASy TrEMBL
Match: A0A5D3D743 (4-hydroxy-4-methyl-2-oxoglutarate aldolase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold443G00240 PE=3 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 2.4e-05
Identity = 25/33 (75.76%), Postives = 28/33 (84.85%), Query Frame = 0 

Query: 22 MAAPATAEVCDTNAGHITSGGLRVLQASFEIYG 55
          MAAPATA+VCD NA H+T+G LRVLQ  FEIYG
Sbjct: 1  MAAPATADVCDANAAHVTNGDLRVLQPKFEIYG 33

[Close]
BLAST of Carg25232 vs. ExPASy TrEMBL
Match: A0A0A0L5X9 (4-hydroxy-4-methyl-2-oxoglutarate aldolase OS=Cucumis sativus OX=3659 GN=Csa_3G044520 PE=3 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 2.4e-05
Identity = 25/33 (75.76%), Postives = 28/33 (84.85%), Query Frame = 0 

Query: 22 MAAPATAEVCDTNAGHITSGGLRVLQASFEIYG 55
          MAAPATA+VCD NA H+T+G LRVLQ  FEIYG
Sbjct: 1  MAAPATADVCDANAAHVTNGDLRVLQPKFEIYG 33

[Close]
BLAST of Carg25232 vs. ExPASy TrEMBL
Match: A0A6J1GE55 (4-hydroxy-4-methyl-2-oxoglutarate aldolase OS=Cucurbita moschata OX=3662 GN=LOC111453129 PE=3 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 5.4e-05
Identity = 23/33 (69.70%), Postives = 28/33 (84.85%), Query Frame = 0 

Query: 22 MAAPATAEVCDTNAGHITSGGLRVLQASFEIYG 55
          MAAPATA++CD NA H+TSG LRVLQ  F++YG
Sbjct: 1  MAAPATADICDANAAHVTSGDLRVLQQKFKVYG 33

[Close]
BLAST of Carg25232 vs. ExPASy TrEMBL
Match: A0A6J1CPD0 (4-hydroxy-4-methyl-2-oxoglutarate aldolase OS=Momordica charantia OX=3673 GN=LOC111013332 PE=3 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 1.2e-04
Identity = 23/33 (69.70%), Postives = 28/33 (84.85%), Query Frame = 0 

Query: 22 MAAPATAEVCDTNAGHITSGGLRVLQASFEIYG 55
          MA+PATA++CD NA H+ SG LRVLQ+ FEIYG
Sbjct: 1  MASPATADICDANAAHVASGDLRVLQSVFEIYG 33

[Close]
BLAST of Carg25232 vs. TAIR 10
Match: AT5G56260.1 (Ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase )

HSP 1 Score: 41.2 bits (95), Expect = 3.4e-04
Identity = 20/33 (60.61%), Postives = 24/33 (72.73%), Query Frame = 0 

Query: 22 MAAPATAEVCDTNAGHITSGGLRVLQASFEIYG 55
          MAA ATAE CD+NA  I++G LR L   F+IYG
Sbjct: 1  MAAFATAEACDSNAELISNGDLRALHPIFKIYG 33

[Close]
BLAST of Carg25232 vs. TAIR 10
Match: AT3G02770.1 (Ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase )

HSP 1 Score: 40.0 bits (92), Expect = 7.7e-04
Identity = 20/33 (60.61%), Postives = 21/33 (63.64%), Query Frame = 0 

Query: 22 MAAPATAEVCDTNAGHITSGGLRVLQASFEIYG 55
          MA   TAEVCD N   I SG LR LQ  F+IYG
Sbjct: 1  MAFVTTAEVCDANQEMIRSGQLRALQPVFQIYG 33

[Close]
BLAST of Carg25232 vs. TAIR 10
Match: AT5G16450.1 (Ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase )

HSP 1 Score: 39.7 bits (91), Expect = 1.0e-03
Identity = 20/33 (60.61%), Postives = 21/33 (63.64%), Query Frame = 0 

Query: 22 MAAPATAEVCDTNAGHITSGGLRVLQASFEIYG 55
          MA   TAEVCD N   I SG LR LQ  F+IYG
Sbjct: 1  MAFVTTAEVCDANQELIRSGQLRALQPIFQIYG 33

[Close]
BLAST of Carg25232 vs. TAIR 10
Match: AT5G16450.2 (Ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase )

HSP 1 Score: 39.7 bits (91), Expect = 1.0e-03
Identity = 20/33 (60.61%), Postives = 21/33 (63.64%), Query Frame = 0 

Query: 22 MAAPATAEVCDTNAGHITSGGLRVLQASFEIYG 55
          MA   TAEVCD N   I SG LR LQ  F+IYG
Sbjct: 1  MAFVTTAEVCDANQELIRSGQLRALQPIFQIYG 33

The following BLAST results are available for this feature:
BLAST of Carg25232 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7015603.15.1e-26100.00hypothetical protein SDJN02_23239, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6596786.12.2e-0571.43putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 3, partial [Cucurbita argyro... [more]
XP_004148273.15.0e-0575.76putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 3 [Cucumis sativus] >XP_0041... [more]
XP_008448991.15.0e-0575.76PREDICTED: putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 3 [Cucumis melo] ... [more]
XP_023540534.18.5e-0572.73putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 3 [Cucurbita pepo subsp. pep... [more]
BLAST of Carg25232 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg25232 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A1S3BKF12.4e-0575.764-hydroxy-4-methyl-2-oxoglutarate aldolase OS=Cucumis melo OX=3656 GN=LOC1034909... [more]
A0A5D3D7432.4e-0575.764-hydroxy-4-methyl-2-oxoglutarate aldolase OS=Cucumis melo var. makuwa OX=119469... [more]
A0A0A0L5X92.4e-0575.764-hydroxy-4-methyl-2-oxoglutarate aldolase OS=Cucumis sativus OX=3659 GN=Csa_3G0... [more]
A0A6J1GE555.4e-0569.704-hydroxy-4-methyl-2-oxoglutarate aldolase OS=Cucurbita moschata OX=3662 GN=LOC1... [more]
A0A6J1CPD01.2e-0469.704-hydroxy-4-methyl-2-oxoglutarate aldolase OS=Momordica charantia OX=3673 GN=LOC... [more]
BLAST of Carg25232 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G56260.13.4e-0460.61Ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase [more]
AT3G02770.17.7e-0460.61Ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase [more]
AT5G16450.11.0e-0360.61Ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase [more]
AT5G16450.21.0e-0360.61Ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg25232-RACarg25232-RAmRNA