Carg18464-RA (mRNA) Silver-seed gourd (SMH-JMG-627) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.AGATTTTTTTATGTACCCCGACTAGAAACCCTAATTCTGATTCTGCGTATTACCGAGCGAGGAACCTCTTCGAAGGGAGAACACAAGAAAGTTGAGATGGCTGGAATCGGACCGCTTACACAGGATTGGGAGCCGGTGGTCATCAGGAAGAAGGCACCCAACGCGGCCGCGAAGAAGGATGAGAAAGCTGTCAATGCCGCACGGCGAGCCGGGGCGGAGATTGAGACTGTAAAGAAATGTGCGCTCACTCTATAACTTTGATCAATTATCCCTTCGATTTTCTTATTGAAACCCTAATCGCTGTTTTCTTGTCTTTGTTTTGTCTTTCAACTCTATTTAATCGTAAGTTCATAACTGTTAAGCGCGGAGGTGATGATAATCGGGTCAAGTTTCTTATTGGGAGGCCATTCGAGATGATTTTTTGAACTGGGTATCACATGGGGTGTCTAAATTTTCTAATGGATCGAGTGGGCAAGGATCGTTTGGGGATTGGGATATGCGTATCTGTTTGAAACCCCCTTATACTCTGCTCATGTTTATTCACGATTCCTGAGGAGTCTGTTTTATCAGGTGAACTTTAGTGTTCCAATGATACTTTCTTTTGCGTTCTGCAGCTACTGCTGGCTCCAACAAATCTGCTTCGAGCAGTACTTCTTTGAACACTAGGAAGCTTGACGAAGAGACTGAGAACCTTACACGTGAGTACTTCTGGATTACACTTGCATAGCATGGTTGTATAATTTTTTTTTTTTAAGATCTCTTTTTTCAATCAGTCAGTGGATCCGTTGGTTTCATATCTTATAAAGAGCTTGCATGCAGTGCATCACATGATATATTTACTATCTCAATTACTTTTATATCTCTCTATAGATGGCACAACCAAGTGCACGAAGCTTCATCATTTGATGTTAGCAATATGTTTTTAAATATCATTGTTCATGTTTTATTTTGACTCTAGATGATCGTGTACCAACTGAGCTGAAGAAAGCAATTATGCAAGCACGAACAGAGAAGAAGCTTACTCAGTCTCAGCTTGCTCAAGTATGTTTGTTTCATTTTTTGTTGGCTCGTCCCATTTTATGTGCGCGTATTAATGATGACCCCGATTTATGTTTTTCTTCCCCTGTAGCTTATTAATGAGAAGCCTCAAGTTATCCAGGAATACGAATCTGGTAAAGCTATTCCAAATCAACAAATCATTACCAAACTTGAGAGAGCTCTTGGGGCAAAACTGCGTGGGAAGAAATAAAGAGATGTGGAAAGTTAAGTATGAGTTCTGCACAAGCTTTTGTTTGAACCATGCACAAAAGTTTATTTCCTACCGTGGTTTCAATGTGTAATTATATGCGACCATCCTTGTGTGCTTTTATAACCACTGTTGCAATGTCTTTGTAAGTTCTTACCTGGAAATAAATGAATATCATGACTGTTATGTTGCGTTAGTTTCCAGATGTTTTGGCTGTACTTTTCACATCAGAATTAAATGGCTGCACCCATGACCATTAATAAGTTAGAACTTTGTATTGAGAGC AGATTTTTTTATGTACCCCGACTAGAAACCCTAATTCTGATTCTGCGTATTACCGAGCGAGGAACCTCTTCGAAGGGAGAACACAAGAAAGTTGAGATGGCTGGAATCGGACCGCTTACACAGGATTGGGAGCCGGTGGTCATCAGGAAGAAGGCACCCAACGCGGCCGCGAAGAAGGATGAGAAAGCTGTCAATGCCGCACGGCGAGCCGGGGCGGAGATTGAGACTGTAAAGAAATCTACTGCTGGCTCCAACAAATCTGCTTCGAGCAGTACTTCTTTGAACACTAGGAAGCTTGACGAAGAGACTGAGAACCTTACACATGATCGTGTACCAACTGAGCTGAAGAAAGCAATTATGCAAGCACGAACAGAGAAGAAGCTTACTCAGTCTCAGCTTGCTCAACTTATTAATGAGAAGCCTCAAGTTATCCAGGAATACGAATCTGGTAAAGCTATTCCAAATCAACAAATCATTACCAAACTTGAGAGAGCTCTTGGGGCAAAACTGCGTGGGAAGAAATAAAGAGATGTGGAAAGTTAAGTATGAGTTCTGCACAAGCTTTTGTTTGAACCATGCACAAAAGTTTATTTCCTACCGTGGTTTCAATGTGTAATTATATGCGACCATCCTTGTGTGCTTTTATAACCACTGTTGCAATGTCTTTGTAAGTTCTTACCTGGAAATAAATGAATATCATGACTGTTATGTTGCGTTAGTTTCCAGATGTTTTGGCTGTACTTTTCACATCAGAATTAAATGGCTGCACCCATGACCATTAATAAGTTAGAACTTTGTATTGAGAGC ATGGCTGGAATCGGACCGCTTACACAGGATTGGGAGCCGGTGGTCATCAGGAAGAAGGCACCCAACGCGGCCGCGAAGAAGGATGAGAAAGCTGTCAATGCCGCACGGCGAGCCGGGGCGGAGATTGAGACTGTAAAGAAATCTACTGCTGGCTCCAACAAATCTGCTTCGAGCAGTACTTCTTTGAACACTAGGAAGCTTGACGAAGAGACTGAGAACCTTACACATGATCGTGTACCAACTGAGCTGAAGAAAGCAATTATGCAAGCACGAACAGAGAAGAAGCTTACTCAGTCTCAGCTTGCTCAACTTATTAATGAGAAGCCTCAAGTTATCCAGGAATACGAATCTGGTAAAGCTATTCCAAATCAACAAATCATTACCAAACTTGAGAGAGCTCTTGGGGCAAAACTGCGTGGGAAGAAATAA MAGIGPLTQDWEPVVIRKKAPNAAAKKDEKAVNAARRAGAEIETVKKSTAGSNKSASSSTSLNTRKLDEETENLTHDRVPTELKKAIMQARTEKKLTQSQLAQLINEKPQVIQEYESGKAIPNQQIITKLERALGAKLRGKK Homology
BLAST of Carg18464-RA vs. NCBI nr
Match: XP_022943574.1 (multiprotein-bridging factor 1b [Cucurbita moschata] >XP_022986044.1 multiprotein-bridging factor 1b [Cucurbita maxima] >XP_023513396.1 multiprotein-bridging factor 1b [Cucurbita pepo subsp. pepo] >KAG6570527.1 Multiprotein-bridging factor 1b, partial [Cucurbita argyrosperma subsp. sororia] >KAG7010384.1 Multiprotein-bridging factor 1b [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 258.1 bits (658), Expect = 4.5e-65 Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = 0
BLAST of Carg18464-RA vs. NCBI nr
Match: XP_008448251.1 (PREDICTED: multiprotein-bridging factor 1b [Cucumis melo] >KAA0062161.1 multiprotein-bridging factor 1b [Cucumis melo var. makuwa] >TYK04879.1 multiprotein-bridging factor 1b [Cucumis melo var. makuwa]) HSP 1 Score: 250.8 bits (639), Expect = 7.3e-63 Identity = 137/142 (96.48%), Postives = 140/142 (98.59%), Query Frame = 0
BLAST of Carg18464-RA vs. NCBI nr
Match: XP_023533868.1 (multiprotein-bridging factor 1b-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 250.0 bits (637), Expect = 1.2e-62 Identity = 137/142 (96.48%), Postives = 140/142 (98.59%), Query Frame = 0
BLAST of Carg18464-RA vs. NCBI nr
Match: XP_004149278.1 (multiprotein-bridging factor 1b [Cucumis sativus] >KGN46986.1 hypothetical protein Csa_020917 [Cucumis sativus]) HSP 1 Score: 249.6 bits (636), Expect = 1.6e-62 Identity = 136/142 (95.77%), Postives = 140/142 (98.59%), Query Frame = 0
BLAST of Carg18464-RA vs. NCBI nr
Match: XP_022149711.1 (multiprotein-bridging factor 1b-like [Momordica charantia]) HSP 1 Score: 249.6 bits (636), Expect = 1.6e-62 Identity = 135/142 (95.07%), Postives = 141/142 (99.30%), Query Frame = 0
BLAST of Carg18464-RA vs. ExPASy Swiss-Prot
Match: Q9LXT3 (Multiprotein-bridging factor 1b OS=Arabidopsis thaliana OX=3702 GN=MBF1B PE=1 SV=1) HSP 1 Score: 231.1 bits (588), Expect = 7.8e-60 Identity = 123/142 (86.62%), Postives = 136/142 (95.77%), Query Frame = 0
BLAST of Carg18464-RA vs. ExPASy Swiss-Prot
Match: Q9SJI8 (Multiprotein-bridging factor 1a OS=Arabidopsis thaliana OX=3702 GN=MBF1A PE=2 SV=1) HSP 1 Score: 226.5 bits (576), Expect = 1.9e-58 Identity = 120/142 (84.51%), Postives = 135/142 (95.07%), Query Frame = 0
BLAST of Carg18464-RA vs. ExPASy Swiss-Prot
Match: Q9LV58 (Multiprotein-bridging factor 1c OS=Arabidopsis thaliana OX=3702 GN=MBF1C PE=1 SV=1) HSP 1 Score: 132.9 bits (333), Expect = 2.9e-30 Identity = 74/139 (53.24%), Postives = 99/139 (71.22%), Query Frame = 0
BLAST of Carg18464-RA vs. ExPASy Swiss-Prot
Match: Q5ZMC0 (Endothelial differentiation-related factor 1 homolog OS=Gallus gallus OX=9031 GN=EDF1 PE=2 SV=1) HSP 1 Score: 126.7 bits (317), Expect = 2.1e-28 Identity = 76/133 (57.14%), Postives = 93/133 (69.92%), Query Frame = 0
BLAST of Carg18464-RA vs. ExPASy Swiss-Prot
Match: Q6GPQ6 (Endothelial differentiation-related factor 1 homolog OS=Xenopus laevis OX=8355 GN=edf1 PE=2 SV=1) HSP 1 Score: 126.7 bits (317), Expect = 2.1e-28 Identity = 75/133 (56.39%), Postives = 92/133 (69.17%), Query Frame = 0
BLAST of Carg18464-RA vs. ExPASy TrEMBL
Match: A0A6J1JEZ7 (multiprotein-bridging factor 1b OS=Cucurbita maxima OX=3661 GN=LOC111483898 PE=4 SV=1) HSP 1 Score: 258.1 bits (658), Expect = 2.2e-65 Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = 0
BLAST of Carg18464-RA vs. ExPASy TrEMBL
Match: A0A6J1FUR1 (multiprotein-bridging factor 1b OS=Cucurbita moschata OX=3662 GN=LOC111448304 PE=4 SV=1) HSP 1 Score: 258.1 bits (658), Expect = 2.2e-65 Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = 0
BLAST of Carg18464-RA vs. ExPASy TrEMBL
Match: A0A5A7V8Z5 (Multiprotein-bridging factor 1b OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold143G00720 PE=4 SV=1) HSP 1 Score: 250.8 bits (639), Expect = 3.5e-63 Identity = 137/142 (96.48%), Postives = 140/142 (98.59%), Query Frame = 0
BLAST of Carg18464-RA vs. ExPASy TrEMBL
Match: A0A1S3BIN6 (multiprotein-bridging factor 1b OS=Cucumis melo OX=3656 GN=LOC103490498 PE=4 SV=1) HSP 1 Score: 250.8 bits (639), Expect = 3.5e-63 Identity = 137/142 (96.48%), Postives = 140/142 (98.59%), Query Frame = 0
BLAST of Carg18464-RA vs. ExPASy TrEMBL
Match: A0A0A0KGV6 (HTH cro/C1-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G157120 PE=4 SV=1) HSP 1 Score: 249.6 bits (636), Expect = 7.8e-63 Identity = 136/142 (95.77%), Postives = 140/142 (98.59%), Query Frame = 0
BLAST of Carg18464-RA vs. TAIR 10
Match: AT3G58680.1 (multiprotein bridging factor 1B ) HSP 1 Score: 231.1 bits (588), Expect = 5.5e-61 Identity = 123/142 (86.62%), Postives = 136/142 (95.77%), Query Frame = 0
BLAST of Carg18464-RA vs. TAIR 10
Match: AT2G42680.1 (multiprotein bridging factor 1A ) HSP 1 Score: 226.5 bits (576), Expect = 1.4e-59 Identity = 120/142 (84.51%), Postives = 135/142 (95.07%), Query Frame = 0
BLAST of Carg18464-RA vs. TAIR 10
Match: AT3G24500.1 (multiprotein bridging factor 1C ) HSP 1 Score: 132.9 bits (333), Expect = 2.1e-31 Identity = 74/139 (53.24%), Postives = 99/139 (71.22%), Query Frame = 0
BLAST of Carg18464-RA vs. TAIR 10
Match: AT3G24500.2 (multiprotein bridging factor 1C ) HSP 1 Score: 67.4 bits (163), Expect = 1.1e-11 Identity = 42/89 (47.19%), Postives = 56/89 (62.92%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
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