Carg18464 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg18464
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	multiprotein bridging factor 1B
Location	Carg_Chr20: 1008834 .. 1010364 (-)
RNA-Seq Expression	Carg18464
Synteny	Carg18464

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGATTTTTTTATGTACCCCGACTAGAAACCCTAATTCTGATTCTGCGTATTACCGAGCGAGGAACCTCTTCGAAGGGAGAACACAAGAAAGTTGAGATGGCTGGAATCGGACCGCTTACACAGGATTGGGAGCCGGTGGTCATCAGGAAGAAGGCACCCAACGCGGCCGCGAAGAAGGATGAGAAAGCTGTCAATGCCGCACGGCGAGCCGGGGCGGAGATTGAGACTGTAAAGAAATGTGCGCTCACTCTATAACTTTGATCAATTATCCCTTCGATTTTCTTATTGAAACCCTAATCGCTGTTTTCTTGTCTTTGTTTTGTCTTTCAACTCTATTTAATCGTAAGTTCATAACTGTTAAGCGCGGAGGTGATGATAATCGGGTCAAGTTTCTTATTGGGAGGCCATTCGAGATGATTTTTTGAACTGGGTATCACATGGGGTGTCTAAATTTTCTAATGGATCGAGTGGGCAAGGATCGTTTGGGGATTGGGATATGCGTATCTGTTTGAAACCCCCTTATACTCTGCTCATGTTTATTCACGATTCCTGAGGAGTCTGTTTTATCAGGTGAACTTTAGTGTTCCAATGATACTTTCTTTTGCGTTCTGCAGCTACTGCTGGCTCCAACAAATCTGCTTCGAGCAGTACTTCTTTGAACACTAGGAAGCTTGACGAAGAGACTGAGAACCTTACACGTGAGTACTTCTGGATTACACTTGCATAGCATGGTTGTATAATTTTTTTTTTTTAAGATCTCTTTTTTCAATCAGTCAGTGGATCCGTTGGTTTCATATCTTATAAAGAGCTTGCATGCAGTGCATCACATGATATATTTACTATCTCAATTACTTTTATATCTCTCTATAGATGGCACAACCAAGTGCACGAAGCTTCATCATTTGATGTTAGCAATATGTTTTTAAATATCATTGTTCATGTTTTATTTTGACTCTAGATGATCGTGTACCAACTGAGCTGAAGAAAGCAATTATGCAAGCACGAACAGAGAAGAAGCTTACTCAGTCTCAGCTTGCTCAAGTATGTTTGTTTCATTTTTTGTTGGCTCGTCCCATTTTATGTGCGCGTATTAATGATGACCCCGATTTATGTTTTTCTTCCCCTGTAGCTTATTAATGAGAAGCCTCAAGTTATCCAGGAATACGAATCTGGTAAAGCTATTCCAAATCAACAAATCATTACCAAACTTGAGAGAGCTCTTGGGGCAAAACTGCGTGGGAAGAAATAAAGAGATGTGGAAAGTTAAGTATGAGTTCTGCACAAGCTTTTGTTTGAACCATGCACAAAAGTTTATTTCCTACCGTGGTTTCAATGTGTAATTATATGCGACCATCCTTGTGTGCTTTTATAACCACTGTTGCAATGTCTTTGTAAGTTCTTACCTGGAAATAAATGAATATCATGACTGTTATGTTGCGTTAGTTTCCAGATGTTTTGGCTGTACTTTTCACATCAGAATTAAATGGCTGCACCCATGACCATTAATAAGTTAGAACTTTGTATTGAGAGC

mRNA sequence

AGATTTTTTTATGTACCCCGACTAGAAACCCTAATTCTGATTCTGCGTATTACCGAGCGAGGAACCTCTTCGAAGGGAGAACACAAGAAAGTTGAGATGGCTGGAATCGGACCGCTTACACAGGATTGGGAGCCGGTGGTCATCAGGAAGAAGGCACCCAACGCGGCCGCGAAGAAGGATGAGAAAGCTGTCAATGCCGCACGGCGAGCCGGGGCGGAGATTGAGACTGTAAAGAAATCTACTGCTGGCTCCAACAAATCTGCTTCGAGCAGTACTTCTTTGAACACTAGGAAGCTTGACGAAGAGACTGAGAACCTTACACATGATCGTGTACCAACTGAGCTGAAGAAAGCAATTATGCAAGCACGAACAGAGAAGAAGCTTACTCAGTCTCAGCTTGCTCAACTTATTAATGAGAAGCCTCAAGTTATCCAGGAATACGAATCTGGTAAAGCTATTCCAAATCAACAAATCATTACCAAACTTGAGAGAGCTCTTGGGGCAAAACTGCGTGGGAAGAAATAAAGAGATGTGGAAAGTTAAGTATGAGTTCTGCACAAGCTTTTGTTTGAACCATGCACAAAAGTTTATTTCCTACCGTGGTTTCAATGTGTAATTATATGCGACCATCCTTGTGTGCTTTTATAACCACTGTTGCAATGTCTTTGTAAGTTCTTACCTGGAAATAAATGAATATCATGACTGTTATGTTGCGTTAGTTTCCAGATGTTTTGGCTGTACTTTTCACATCAGAATTAAATGGCTGCACCCATGACCATTAATAAGTTAGAACTTTGTATTGAGAGC

Coding sequence (CDS)

ATGGCTGGAATCGGACCGCTTACACAGGATTGGGAGCCGGTGGTCATCAGGAAGAAGGCACCCAACGCGGCCGCGAAGAAGGATGAGAAAGCTGTCAATGCCGCACGGCGAGCCGGGGCGGAGATTGAGACTGTAAAGAAATCTACTGCTGGCTCCAACAAATCTGCTTCGAGCAGTACTTCTTTGAACACTAGGAAGCTTGACGAAGAGACTGAGAACCTTACACATGATCGTGTACCAACTGAGCTGAAGAAAGCAATTATGCAAGCACGAACAGAGAAGAAGCTTACTCAGTCTCAGCTTGCTCAACTTATTAATGAGAAGCCTCAAGTTATCCAGGAATACGAATCTGGTAAAGCTATTCCAAATCAACAAATCATTACCAAACTTGAGAGAGCTCTTGGGGCAAAACTGCGTGGGAAGAAATAA

Protein sequence

MAGIGPLTQDWEPVVIRKKAPNAAAKKDEKAVNAARRAGAEIETVKKSTAGSNKSASSSTSLNTRKLDEETENLTHDRVPTELKKAIMQARTEKKLTQSQLAQLINEKPQVIQEYESGKAIPNQQIITKLERALGAKLRGKK

Homology

[Close]

BLAST of Carg18464 vs. NCBI nr
Match: XP_022943574.1 (multiprotein-bridging factor 1b [Cucurbita moschata] >XP_022986044.1 multiprotein-bridging factor 1b [Cucurbita maxima] >XP_023513396.1 multiprotein-bridging factor 1b [Cucurbita pepo subsp. pepo] >KAG6570527.1 Multiprotein-bridging factor 1b, partial [Cucurbita argyrosperma subsp. sororia] >KAG7010384.1 Multiprotein-bridging factor 1b [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 258.1 bits (658), Expect = 4.5e-65
Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = 0


Query: 1   MAGIGPLTQDWEPVVIRKKAPNAAAKKDEKAVNAARRAGAEIETVKKSTAGSNKSASSST 60
           MAGIGPLTQDWEPVVIRKKAPNAAAKKDEKAVNAARRAGAEIETVKKSTAGSNKSASSST
Sbjct: 1   MAGIGPLTQDWEPVVIRKKAPNAAAKKDEKAVNAARRAGAEIETVKKSTAGSNKSASSST 60

Query: 61  SLNTRKLDEETENLTHDRVPTELKKAIMQARTEKKLTQSQLAQLINEKPQVIQEYESGKA 120
           SLNTRKLDEETENLTHDRVPTELKKAIMQARTEKKLTQSQLAQLINEKPQVIQEYESGKA
Sbjct: 61  SLNTRKLDEETENLTHDRVPTELKKAIMQARTEKKLTQSQLAQLINEKPQVIQEYESGKA 120

Query: 121 IPNQQIITKLERALGAKLRGKK 143
           IPNQQIITKLERALGAKLRGKK
Sbjct: 121 IPNQQIITKLERALGAKLRGKK 142

[Close]

BLAST of Carg18464 vs. NCBI nr
Match: XP_008448251.1 (PREDICTED: multiprotein-bridging factor 1b [Cucumis melo] >KAA0062161.1 multiprotein-bridging factor 1b [Cucumis melo var. makuwa] >TYK04879.1 multiprotein-bridging factor 1b [Cucumis melo var. makuwa])

HSP 1 Score: 250.8 bits (639), Expect = 7.3e-63
Identity = 137/142 (96.48%), Postives = 140/142 (98.59%), Query Frame = 0


Query: 1   MAGIGPLTQDWEPVVIRKKAPNAAAKKDEKAVNAARRAGAEIETVKKSTAGSNKSASSST 60
           MAGIGPL+QDWEPVVIRKKAPNAAAKKDEKAVNAARRAGAEIET+KKS AGSNKSASSST
Sbjct: 1   MAGIGPLSQDWEPVVIRKKAPNAAAKKDEKAVNAARRAGAEIETIKKSAAGSNKSASSST 60

Query: 61  SLNTRKLDEETENLTHDRVPTELKKAIMQARTEKKLTQSQLAQLINEKPQVIQEYESGKA 120
           SLNTRKLDEETENL+HDRVPTELKKAIM ARTEKKLTQSQLAQLINEKPQVIQEYESGKA
Sbjct: 61  SLNTRKLDEETENLSHDRVPTELKKAIMHARTEKKLTQSQLAQLINEKPQVIQEYESGKA 120

Query: 121 IPNQQIITKLERALGAKLRGKK 143
           IPNQQIITKLERALGAKLRGKK
Sbjct: 121 IPNQQIITKLERALGAKLRGKK 142

[Close]

BLAST of Carg18464 vs. NCBI nr
Match: XP_023533868.1 (multiprotein-bridging factor 1b-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 250.0 bits (637), Expect = 1.2e-62
Identity = 137/142 (96.48%), Postives = 140/142 (98.59%), Query Frame = 0


Query: 1   MAGIGPLTQDWEPVVIRKKAPNAAAKKDEKAVNAARRAGAEIETVKKSTAGSNKSASSST 60
           MAGI PL+QDWEPVV+RKKAPNAAAKKDEKAVNAARRAGAEIET+KKS AGSNKSASSST
Sbjct: 1   MAGIVPLSQDWEPVVLRKKAPNAAAKKDEKAVNAARRAGAEIETIKKSAAGSNKSASSST 60

Query: 61  SLNTRKLDEETENLTHDRVPTELKKAIMQARTEKKLTQSQLAQLINEKPQVIQEYESGKA 120
           SLNTRKLDEETENLTHDRVPTELKKAIMQARTEKKLTQSQLAQLINEKPQVIQEYESGKA
Sbjct: 61  SLNTRKLDEETENLTHDRVPTELKKAIMQARTEKKLTQSQLAQLINEKPQVIQEYESGKA 120

Query: 121 IPNQQIITKLERALGAKLRGKK 143
           IPNQQIITKLERALGAKLRGKK
Sbjct: 121 IPNQQIITKLERALGAKLRGKK 142

[Close]

BLAST of Carg18464 vs. NCBI nr
Match: XP_004149278.1 (multiprotein-bridging factor 1b [Cucumis sativus] >KGN46986.1 hypothetical protein Csa_020917 [Cucumis sativus])

HSP 1 Score: 249.6 bits (636), Expect = 1.6e-62
Identity = 136/142 (95.77%), Postives = 140/142 (98.59%), Query Frame = 0


Query: 1   MAGIGPLTQDWEPVVIRKKAPNAAAKKDEKAVNAARRAGAEIETVKKSTAGSNKSASSST 60
           MAGIGPL+QDWEPVVIRKKAPNAAAKKDEKAVNAARRAGAEIET+KKS AGSNKSASSST
Sbjct: 1   MAGIGPLSQDWEPVVIRKKAPNAAAKKDEKAVNAARRAGAEIETIKKSAAGSNKSASSST 60

Query: 61  SLNTRKLDEETENLTHDRVPTELKKAIMQARTEKKLTQSQLAQLINEKPQVIQEYESGKA 120
           +LNTRKLDEETENL+HDRVPTELKKAIM ARTEKKLTQSQLAQLINEKPQVIQEYESGKA
Sbjct: 61  TLNTRKLDEETENLSHDRVPTELKKAIMHARTEKKLTQSQLAQLINEKPQVIQEYESGKA 120

Query: 121 IPNQQIITKLERALGAKLRGKK 143
           IPNQQIITKLERALGAKLRGKK
Sbjct: 121 IPNQQIITKLERALGAKLRGKK 142

[Close]

BLAST of Carg18464 vs. NCBI nr
Match: XP_022149711.1 (multiprotein-bridging factor 1b-like [Momordica charantia])

HSP 1 Score: 249.6 bits (636), Expect = 1.6e-62
Identity = 135/142 (95.07%), Postives = 141/142 (99.30%), Query Frame = 0


Query: 1   MAGIGPLTQDWEPVVIRKKAPNAAAKKDEKAVNAARRAGAEIETVKKSTAGSNKSASSST 60
           MAGIGPL+QDWEPVV+RKKAPNAAAKKDEKAVNAARRAGAEIET+KKS AGSNKSASSST
Sbjct: 1   MAGIGPLSQDWEPVVLRKKAPNAAAKKDEKAVNAARRAGAEIETIKKSAAGSNKSASSST 60

Query: 61  SLNTRKLDEETENLTHDRVPTELKKAIMQARTEKKLTQSQLAQLINEKPQVIQEYESGKA 120
           SLNTRKLDEETENL+HDRVPTELKKAIMQARTEKKLTQSQLAQLINEKPQVIQ+YE+GKA
Sbjct: 61  SLNTRKLDEETENLSHDRVPTELKKAIMQARTEKKLTQSQLAQLINEKPQVIQDYEAGKA 120

Query: 121 IPNQQIITKLERALGAKLRGKK 143
           IPNQQIITKLERALGAKLRGKK
Sbjct: 121 IPNQQIITKLERALGAKLRGKK 142

[Close]

BLAST of Carg18464 vs. ExPASy Swiss-Prot
Match: Q9LXT3 (Multiprotein-bridging factor 1b OS=Arabidopsis thaliana OX=3702 GN=MBF1B PE=1 SV=1)

HSP 1 Score: 231.1 bits (588), Expect = 7.8e-60
Identity = 123/142 (86.62%), Postives = 136/142 (95.77%), Query Frame = 0


Query: 1   MAGIGPLTQDWEPVVIRKKAPNAAAKKDEKAVNAARRAGAEIETVKKSTAGSNKSASSST 60
           MAGIGP+TQDWEPVVIRK+APNAAAK+DEK VNAARR+GA+IETV+K  AGSNK+ASS T
Sbjct: 1   MAGIGPITQDWEPVVIRKRAPNAAAKRDEKTVNAARRSGADIETVRKFNAGSNKAASSGT 60

Query: 61  SLNTRKLDEETENLTHDRVPTELKKAIMQARTEKKLTQSQLAQLINEKPQVIQEYESGKA 120
           SLNT+KLD++TENL+HDRVPTELKKAIMQAR EKKLTQSQLA LINEKPQVIQEYESGKA
Sbjct: 61  SLNTKKLDDDTENLSHDRVPTELKKAIMQARGEKKLTQSQLAHLINEKPQVIQEYESGKA 120

Query: 121 IPNQQIITKLERALGAKLRGKK 143
           IPNQQI++KLERALGAKLRGKK
Sbjct: 121 IPNQQILSKLERALGAKLRGKK 142

[Close]

BLAST of Carg18464 vs. ExPASy Swiss-Prot
Match: Q9SJI8 (Multiprotein-bridging factor 1a OS=Arabidopsis thaliana OX=3702 GN=MBF1A PE=2 SV=1)

HSP 1 Score: 226.5 bits (576), Expect = 1.9e-58
Identity = 120/142 (84.51%), Postives = 135/142 (95.07%), Query Frame = 0


Query: 1   MAGIGPLTQDWEPVVIRKKAPNAAAKKDEKAVNAARRAGAEIETVKKSTAGSNKSASSST 60
           MAGIGP+TQDWEPVVIRKK  NAAAK+DEK VNAARR+GA+IETV+K  AG+NK+ASS T
Sbjct: 1   MAGIGPITQDWEPVVIRKKPANAAAKRDEKTVNAARRSGADIETVRKFNAGTNKAASSGT 60

Query: 61  SLNTRKLDEETENLTHDRVPTELKKAIMQARTEKKLTQSQLAQLINEKPQVIQEYESGKA 120
           SLNT+ LD++TENLTH+RVPTELKKAIMQART+KKLTQSQLAQ+INEKPQVIQEYESGKA
Sbjct: 61  SLNTKMLDDDTENLTHERVPTELKKAIMQARTDKKLTQSQLAQIINEKPQVIQEYESGKA 120

Query: 121 IPNQQIITKLERALGAKLRGKK 143
           IPNQQI++KLERALGAKLRGKK
Sbjct: 121 IPNQQILSKLERALGAKLRGKK 142

[Close]

BLAST of Carg18464 vs. ExPASy Swiss-Prot
Match: Q9LV58 (Multiprotein-bridging factor 1c OS=Arabidopsis thaliana OX=3702 GN=MBF1C PE=1 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 2.9e-30
Identity = 74/139 (53.24%), Postives = 99/139 (71.22%), Query Frame = 0


Query: 5   GPLTQDWEPVVIRKKAPNAAAKKDEKAVNAARRAGAEIETVKKSTAGSNKSASSST--SL 64
           G +TQDWEPVV+ K    +   +D KAVNAA R G  ++TVKK  AGSNK   S+    +
Sbjct: 7   GAVTQDWEPVVLHKSKQKSQDLRDPKAVNAALRNGVAVQTVKKFDAGSNKKGKSTAVPVI 66

Query: 65  NTRKLDEETENLTHDRVPTELKKAIMQARTEKKLTQSQLAQLINEKPQVIQEYESGKAIP 124
           NT+KL+EETE    DRV  E++  I +AR EKK++Q+ LA+ INE+ QV+QEYE+GKA+P
Sbjct: 67  NTKKLEEETEPAAMDRVKAEVRLMIQKARLEKKMSQADLAKQINERTQVVQEYENGKAVP 126

Query: 125 NQQIITKLERALGAKLRGK 142
           NQ ++ K+E+ LG KLRGK
Sbjct: 127 NQAVLAKMEKVLGVKLRGK 145

[Close]

BLAST of Carg18464 vs. ExPASy Swiss-Prot
Match: Q5ZMC0 (Endothelial differentiation-related factor 1 homolog OS=Gallus gallus OX=9031 GN=EDF1 PE=2 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 2.1e-28
Identity = 76/133 (57.14%), Postives = 93/133 (69.92%), Query Frame = 0


Query: 10  DWEPV-VIRKKAPNAAAKKDEKAVNAARRAGAEIETVKKSTAGSNKSASSSTSLNTRKLD 69
           DW+ V V+RKK P+AA  K ++AV AA+R G ++ET KK  AG NK      + NT KLD
Sbjct: 5   DWDTVTVLRKKGPSAAQAKSKQAVLAAQRRGEDVETSKKWAAGQNK--QHFITKNTAKLD 64

Query: 70  EETENLTHDRVPTELKKAIMQARTEKKLTQSQLAQLINEKPQVIQEYESGKAIPNQQIIT 129
            ETE L HDRVP E+ K I Q R  K +TQ  LA  INEKPQVI +YESG+AIPN Q++ 
Sbjct: 65  RETEELHHDRVPLEVGKVIQQGRQSKGMTQKDLATKINEKPQVIADYESGRAIPNNQVMG 124

Query: 130 KLERALGAKLRGK 142
           K+ERA+G KLRGK
Sbjct: 125 KIERAIGLKLRGK 135

[Close]

BLAST of Carg18464 vs. ExPASy Swiss-Prot
Match: Q6GPQ6 (Endothelial differentiation-related factor 1 homolog OS=Xenopus laevis OX=8355 GN=edf1 PE=2 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 2.1e-28
Identity = 75/133 (56.39%), Postives = 92/133 (69.17%), Query Frame = 0


Query: 10  DWEPV-VIRKKAPNAAAKKDEKAVNAARRAGAEIETVKKSTAGSNKSASSSTSLNTRKLD 69
           DW+ V V+RKK P AA  K ++A+ AA+R G E+ET KK +AG NK    + + NT KLD
Sbjct: 5   DWDTVTVLRKKGPTAAQAKSKQAITAAQRRGEEVETSKKWSAGQNK--QHTITRNTAKLD 64

Query: 70  EETENLTHDRVPTELKKAIMQARTEKKLTQSQLAQLINEKPQVIQEYESGKAIPNQQIIT 129
            ETE L HDRVP E+ K I Q R  K +TQ  LA  INEKPQVI +YE GKAIPN Q++ 
Sbjct: 65  RETEELHHDRVPLEVGKVIQQGRQGKGMTQKDLATKINEKPQVIADYECGKAIPNNQVMG 124

Query: 130 KLERALGAKLRGK 142
           K+ER +G KLRGK
Sbjct: 125 KIERVIGLKLRGK 135

[Close]

BLAST of Carg18464 vs. ExPASy TrEMBL
Match: A0A6J1JEZ7 (multiprotein-bridging factor 1b OS=Cucurbita maxima OX=3661 GN=LOC111483898 PE=4 SV=1)

HSP 1 Score: 258.1 bits (658), Expect = 2.2e-65
Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = 0


Query: 1   MAGIGPLTQDWEPVVIRKKAPNAAAKKDEKAVNAARRAGAEIETVKKSTAGSNKSASSST 60
           MAGIGPLTQDWEPVVIRKKAPNAAAKKDEKAVNAARRAGAEIETVKKSTAGSNKSASSST
Sbjct: 1   MAGIGPLTQDWEPVVIRKKAPNAAAKKDEKAVNAARRAGAEIETVKKSTAGSNKSASSST 60

Query: 61  SLNTRKLDEETENLTHDRVPTELKKAIMQARTEKKLTQSQLAQLINEKPQVIQEYESGKA 120
           SLNTRKLDEETENLTHDRVPTELKKAIMQARTEKKLTQSQLAQLINEKPQVIQEYESGKA
Sbjct: 61  SLNTRKLDEETENLTHDRVPTELKKAIMQARTEKKLTQSQLAQLINEKPQVIQEYESGKA 120

Query: 121 IPNQQIITKLERALGAKLRGKK 143
           IPNQQIITKLERALGAKLRGKK
Sbjct: 121 IPNQQIITKLERALGAKLRGKK 142

[Close]

BLAST of Carg18464 vs. ExPASy TrEMBL
Match: A0A6J1FUR1 (multiprotein-bridging factor 1b OS=Cucurbita moschata OX=3662 GN=LOC111448304 PE=4 SV=1)

HSP 1 Score: 258.1 bits (658), Expect = 2.2e-65
Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = 0


Query: 1   MAGIGPLTQDWEPVVIRKKAPNAAAKKDEKAVNAARRAGAEIETVKKSTAGSNKSASSST 60
           MAGIGPLTQDWEPVVIRKKAPNAAAKKDEKAVNAARRAGAEIETVKKSTAGSNKSASSST
Sbjct: 1   MAGIGPLTQDWEPVVIRKKAPNAAAKKDEKAVNAARRAGAEIETVKKSTAGSNKSASSST 60

Query: 61  SLNTRKLDEETENLTHDRVPTELKKAIMQARTEKKLTQSQLAQLINEKPQVIQEYESGKA 120
           SLNTRKLDEETENLTHDRVPTELKKAIMQARTEKKLTQSQLAQLINEKPQVIQEYESGKA
Sbjct: 61  SLNTRKLDEETENLTHDRVPTELKKAIMQARTEKKLTQSQLAQLINEKPQVIQEYESGKA 120

Query: 121 IPNQQIITKLERALGAKLRGKK 143
           IPNQQIITKLERALGAKLRGKK
Sbjct: 121 IPNQQIITKLERALGAKLRGKK 142

[Close]

BLAST of Carg18464 vs. ExPASy TrEMBL
Match: A0A5A7V8Z5 (Multiprotein-bridging factor 1b OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold143G00720 PE=4 SV=1)

HSP 1 Score: 250.8 bits (639), Expect = 3.5e-63
Identity = 137/142 (96.48%), Postives = 140/142 (98.59%), Query Frame = 0


Query: 1   MAGIGPLTQDWEPVVIRKKAPNAAAKKDEKAVNAARRAGAEIETVKKSTAGSNKSASSST 60
           MAGIGPL+QDWEPVVIRKKAPNAAAKKDEKAVNAARRAGAEIET+KKS AGSNKSASSST
Sbjct: 1   MAGIGPLSQDWEPVVIRKKAPNAAAKKDEKAVNAARRAGAEIETIKKSAAGSNKSASSST 60

Query: 61  SLNTRKLDEETENLTHDRVPTELKKAIMQARTEKKLTQSQLAQLINEKPQVIQEYESGKA 120
           SLNTRKLDEETENL+HDRVPTELKKAIM ARTEKKLTQSQLAQLINEKPQVIQEYESGKA
Sbjct: 61  SLNTRKLDEETENLSHDRVPTELKKAIMHARTEKKLTQSQLAQLINEKPQVIQEYESGKA 120

Query: 121 IPNQQIITKLERALGAKLRGKK 143
           IPNQQIITKLERALGAKLRGKK
Sbjct: 121 IPNQQIITKLERALGAKLRGKK 142

[Close]

BLAST of Carg18464 vs. ExPASy TrEMBL
Match: A0A1S3BIN6 (multiprotein-bridging factor 1b OS=Cucumis melo OX=3656 GN=LOC103490498 PE=4 SV=1)

HSP 1 Score: 250.8 bits (639), Expect = 3.5e-63
Identity = 137/142 (96.48%), Postives = 140/142 (98.59%), Query Frame = 0


Query: 1   MAGIGPLTQDWEPVVIRKKAPNAAAKKDEKAVNAARRAGAEIETVKKSTAGSNKSASSST 60
           MAGIGPL+QDWEPVVIRKKAPNAAAKKDEKAVNAARRAGAEIET+KKS AGSNKSASSST
Sbjct: 1   MAGIGPLSQDWEPVVIRKKAPNAAAKKDEKAVNAARRAGAEIETIKKSAAGSNKSASSST 60

Query: 61  SLNTRKLDEETENLTHDRVPTELKKAIMQARTEKKLTQSQLAQLINEKPQVIQEYESGKA 120
           SLNTRKLDEETENL+HDRVPTELKKAIM ARTEKKLTQSQLAQLINEKPQVIQEYESGKA
Sbjct: 61  SLNTRKLDEETENLSHDRVPTELKKAIMHARTEKKLTQSQLAQLINEKPQVIQEYESGKA 120

Query: 121 IPNQQIITKLERALGAKLRGKK 143
           IPNQQIITKLERALGAKLRGKK
Sbjct: 121 IPNQQIITKLERALGAKLRGKK 142

[Close]

BLAST of Carg18464 vs. ExPASy TrEMBL
Match: A0A0A0KGV6 (HTH cro/C1-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G157120 PE=4 SV=1)

HSP 1 Score: 249.6 bits (636), Expect = 7.8e-63
Identity = 136/142 (95.77%), Postives = 140/142 (98.59%), Query Frame = 0


Query: 1   MAGIGPLTQDWEPVVIRKKAPNAAAKKDEKAVNAARRAGAEIETVKKSTAGSNKSASSST 60
           MAGIGPL+QDWEPVVIRKKAPNAAAKKDEKAVNAARRAGAEIET+KKS AGSNKSASSST
Sbjct: 1   MAGIGPLSQDWEPVVIRKKAPNAAAKKDEKAVNAARRAGAEIETIKKSAAGSNKSASSST 60

Query: 61  SLNTRKLDEETENLTHDRVPTELKKAIMQARTEKKLTQSQLAQLINEKPQVIQEYESGKA 120
           +LNTRKLDEETENL+HDRVPTELKKAIM ARTEKKLTQSQLAQLINEKPQVIQEYESGKA
Sbjct: 61  TLNTRKLDEETENLSHDRVPTELKKAIMHARTEKKLTQSQLAQLINEKPQVIQEYESGKA 120

Query: 121 IPNQQIITKLERALGAKLRGKK 143
           IPNQQIITKLERALGAKLRGKK
Sbjct: 121 IPNQQIITKLERALGAKLRGKK 142

[Close]

BLAST of Carg18464 vs. TAIR 10
Match: AT3G58680.1 (multiprotein bridging factor 1B )

HSP 1 Score: 231.1 bits (588), Expect = 5.5e-61
Identity = 123/142 (86.62%), Postives = 136/142 (95.77%), Query Frame = 0


Query: 1   MAGIGPLTQDWEPVVIRKKAPNAAAKKDEKAVNAARRAGAEIETVKKSTAGSNKSASSST 60
           MAGIGP+TQDWEPVVIRK+APNAAAK+DEK VNAARR+GA+IETV+K  AGSNK+ASS T
Sbjct: 1   MAGIGPITQDWEPVVIRKRAPNAAAKRDEKTVNAARRSGADIETVRKFNAGSNKAASSGT 60

Query: 61  SLNTRKLDEETENLTHDRVPTELKKAIMQARTEKKLTQSQLAQLINEKPQVIQEYESGKA 120
           SLNT+KLD++TENL+HDRVPTELKKAIMQAR EKKLTQSQLA LINEKPQVIQEYESGKA
Sbjct: 61  SLNTKKLDDDTENLSHDRVPTELKKAIMQARGEKKLTQSQLAHLINEKPQVIQEYESGKA 120

Query: 121 IPNQQIITKLERALGAKLRGKK 143
           IPNQQI++KLERALGAKLRGKK
Sbjct: 121 IPNQQILSKLERALGAKLRGKK 142

[Close]

BLAST of Carg18464 vs. TAIR 10
Match: AT2G42680.1 (multiprotein bridging factor 1A )

HSP 1 Score: 226.5 bits (576), Expect = 1.4e-59
Identity = 120/142 (84.51%), Postives = 135/142 (95.07%), Query Frame = 0


Query: 1   MAGIGPLTQDWEPVVIRKKAPNAAAKKDEKAVNAARRAGAEIETVKKSTAGSNKSASSST 60
           MAGIGP+TQDWEPVVIRKK  NAAAK+DEK VNAARR+GA+IETV+K  AG+NK+ASS T
Sbjct: 1   MAGIGPITQDWEPVVIRKKPANAAAKRDEKTVNAARRSGADIETVRKFNAGTNKAASSGT 60

Query: 61  SLNTRKLDEETENLTHDRVPTELKKAIMQARTEKKLTQSQLAQLINEKPQVIQEYESGKA 120
           SLNT+ LD++TENLTH+RVPTELKKAIMQART+KKLTQSQLAQ+INEKPQVIQEYESGKA
Sbjct: 61  SLNTKMLDDDTENLTHERVPTELKKAIMQARTDKKLTQSQLAQIINEKPQVIQEYESGKA 120

Query: 121 IPNQQIITKLERALGAKLRGKK 143
           IPNQQI++KLERALGAKLRGKK
Sbjct: 121 IPNQQILSKLERALGAKLRGKK 142

[Close]

BLAST of Carg18464 vs. TAIR 10
Match: AT3G24500.1 (multiprotein bridging factor 1C )

HSP 1 Score: 132.9 bits (333), Expect = 2.1e-31
Identity = 74/139 (53.24%), Postives = 99/139 (71.22%), Query Frame = 0


Query: 5   GPLTQDWEPVVIRKKAPNAAAKKDEKAVNAARRAGAEIETVKKSTAGSNKSASSST--SL 64
           G +TQDWEPVV+ K    +   +D KAVNAA R G  ++TVKK  AGSNK   S+    +
Sbjct: 7   GAVTQDWEPVVLHKSKQKSQDLRDPKAVNAALRNGVAVQTVKKFDAGSNKKGKSTAVPVI 66

Query: 65  NTRKLDEETENLTHDRVPTELKKAIMQARTEKKLTQSQLAQLINEKPQVIQEYESGKAIP 124
           NT+KL+EETE    DRV  E++  I +AR EKK++Q+ LA+ INE+ QV+QEYE+GKA+P
Sbjct: 67  NTKKLEEETEPAAMDRVKAEVRLMIQKARLEKKMSQADLAKQINERTQVVQEYENGKAVP 126

Query: 125 NQQIITKLERALGAKLRGK 142
           NQ ++ K+E+ LG KLRGK
Sbjct: 127 NQAVLAKMEKVLGVKLRGK 145

[Close]

BLAST of Carg18464 vs. TAIR 10
Match: AT3G24500.2 (multiprotein bridging factor 1C )

HSP 1 Score: 67.4 bits (163), Expect = 1.1e-11
Identity = 42/89 (47.19%), Postives = 56/89 (62.92%), Query Frame = 0


Query: 5  GPLTQDWEPVVIRKKAPNAAAKKDEKAVNAARRAGAEIETVKKSTAGSNKSASSST--SL 64
          G +TQDWEPVV+ K    +   +D KAVNAA R G  ++TVKK  AGSNK   S+    +
Sbjct: 7  GAVTQDWEPVVLHKSKQKSQDLRDPKAVNAALRNGVAVQTVKKFDAGSNKKGKSTAVPVI 66

Query: 65 NTRKLDEETENLTHDRVPTELKKAIMQAR 92
          NT+KL+EETE    DRV  E++  + + R
Sbjct: 67 NTKKLEEETEPAAMDRVKAEVRLCLRRWR 95

The following BLAST results are available for this feature:

BLAST of Carg18464 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022943574.1	4.5e-65	100.00	multiprotein-bridging factor 1b [Cucurbita moschata] >XP_022986044.1 multiprotei...	[more]
XP_008448251.1	7.3e-63	96.48	PREDICTED: multiprotein-bridging factor 1b [Cucumis melo] >KAA0062161.1 multipro...	[more]
XP_023533868.1	1.2e-62	96.48	multiprotein-bridging factor 1b-like [Cucurbita pepo subsp. pepo]	[more]
XP_004149278.1	1.6e-62	95.77	multiprotein-bridging factor 1b [Cucumis sativus] >KGN46986.1 hypothetical prote...	[more]
XP_022149711.1	1.6e-62	95.07	multiprotein-bridging factor 1b-like [Momordica charantia]	[more]

BLAST of Carg18464 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LXT3	7.8e-60	86.62	Multiprotein-bridging factor 1b OS=Arabidopsis thaliana OX=3702 GN=MBF1B PE=1 SV...	[more]
Q9SJI8	1.9e-58	84.51	Multiprotein-bridging factor 1a OS=Arabidopsis thaliana OX=3702 GN=MBF1A PE=2 SV...	[more]
Q9LV58	2.9e-30	53.24	Multiprotein-bridging factor 1c OS=Arabidopsis thaliana OX=3702 GN=MBF1C PE=1 SV...	[more]
Q5ZMC0	2.1e-28	57.14	Endothelial differentiation-related factor 1 homolog OS=Gallus gallus OX=9031 GN...	[more]
Q6GPQ6	2.1e-28	56.39	Endothelial differentiation-related factor 1 homolog OS=Xenopus laevis OX=8355 G...	[more]

BLAST of Carg18464 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JEZ7	2.2e-65	100.00	multiprotein-bridging factor 1b OS=Cucurbita maxima OX=3661 GN=LOC111483898 PE=4...	[more]
A0A6J1FUR1	2.2e-65	100.00	multiprotein-bridging factor 1b OS=Cucurbita moschata OX=3662 GN=LOC111448304 PE...	[more]
A0A5A7V8Z5	3.5e-63	96.48	Multiprotein-bridging factor 1b OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A1S3BIN6	3.5e-63	96.48	multiprotein-bridging factor 1b OS=Cucumis melo OX=3656 GN=LOC103490498 PE=4 SV=...	[more]
A0A0A0KGV6	7.8e-63	95.77	HTH cro/C1-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G15...	[more]

BLAST of Carg18464 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G58680.1	5.5e-61	86.62	multiprotein bridging factor 1B	[more]
AT2G42680.1	1.4e-59	84.51	multiprotein bridging factor 1A	[more]
AT3G24500.1	2.1e-31	53.24	multiprotein bridging factor 1C	[more]
AT3G24500.2	1.1e-11	47.19	multiprotein bridging factor 1C	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 87..107
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 46..64
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 21..43
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 65..81
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..81
None	No IPR available	PANTHER	PTHR10245	ENDOTHELIAL DIFFERENTIATION-RELATED FACTOR 1 MULTIPROTEIN BRIDGING FACTOR 1	coord: 1..142
None	No IPR available	PANTHER	PTHR10245:SF118	MULTIPROTEIN BRIDGING FACTOR 1B	coord: 1..142
IPR001387	Cro/C1-type helix-turn-helix domain	SMART	SM00530	mbf_short4	coord: 86..141 e-value: 2.2E-11 score: 53.9
IPR001387	Cro/C1-type helix-turn-helix domain	PFAM	PF01381	HTH_3	coord: 87..137 e-value: 5.6E-13 score: 48.7
IPR001387	Cro/C1-type helix-turn-helix domain	PROSITE	PS50943	HTH_CROC1	coord: 87..141 score: 12.571861
IPR001387	Cro/C1-type helix-turn-helix domain	CDD	cd00093	HTH_XRE	coord: 85..135 e-value: 7.45897E-10 score: 49.859
IPR013729	Multiprotein bridging factor 1, N-terminal	PFAM	PF08523	MBF1	coord: 9..79 e-value: 1.4E-23 score: 83.1
IPR010982	Lambda repressor-like, DNA-binding domain superfamily	GENE3D	1.10.260.40		coord: 71..142 e-value: 1.6E-29 score: 103.2
IPR010982	Lambda repressor-like, DNA-binding domain superfamily	SUPERFAMILY	47413	lambda repressor-like DNA-binding domains	coord: 80..138

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg18464-RA	Carg18464-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding