Carg07023-RA (mRNA) Silver-seed gourd (SMH-JMG-627) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGTCAACAAATTCAGGGGATTTTGGAGGCAAATTTGGGAAAATGAGGCTTAAAAGCCTCAAAACAAGGGATGATATATTGACAGTGGATGAAGATTACCACACAGGAGTATCAGCCACAGTGCCATTCATATGGGAGTCCGAGCCAGGCACTCCCAAGGCCAATTTCAGGGACCATGGCTCACTCCTTTCCCCTCTCACGCCCCCACCATCCTATTTCTCCTCACCCTCACACACACCCTCCAAGCATAAATATAACACCAACCCACATCCCTCTCGAGCCAATTTCCTCACCTCGGTTTTCAAGAAGCTTTCTGTGAATAAGGCTCCTCTCCATCCGCTCTCTCCCGGCTCCTCGTCGTCGTCGTCGTCGACACTGACAAGCTCTGAGGGAGAGAGAGGAAGAAGCCCGAGGAGATTGTCGTTTGATTCGAGAGTGGACGAGAACGAGCACGAGGACGAAGAAGAGGAAGAGGAGAATTTCGACTCGCCTGTTTCGACTTTGTTCTTTGGACGTGGCGGAGGATCGAGTGATAAAGGATGCTATTGCTATCCAAAGTTGGTGAAGGTATTCTCCAAGCATTGTTCTAAATGA ATGTCAACAAATTCAGGGGATTTTGGAGGCAAATTTGGGAAAATGAGGCTTAAAAGCCTCAAAACAAGGGATGATATATTGACAGTGGATGAAGATTACCACACAGGAGTATCAGCCACAGTGCCATTCATATGGGAGTCCGAGCCAGGCACTCCCAAGGCCAATTTCAGGGACCATGGCTCACTCCTTTCCCCTCTCACGCCCCCACCATCCTATTTCTCCTCACCCTCACACACACCCTCCAAGCATAAATATAACACCAACCCACATCCCTCTCGAGCCAATTTCCTCACCTCGGTTTTCAAGAAGCTTTCTGTGAATAAGGCTCCTCTCCATCCGCTCTCTCCCGGCTCCTCGTCGTCGTCGTCGTCGACACTGACAAGCTCTGAGGGAGAGAGAGGAAGAAGCCCGAGGAGATTGTCGTTTGATTCGAGAGTGGACGAGAACGAGCACGAGGACGAAGAAGAGGAAGAGGAGAATTTCGACTCGCCTGTTTCGACTTTGTTCTTTGGACGTGGCGGAGGATCGAGTGATAAAGGATGCTATTGCTATCCAAAGTTGGTGAAGGTATTCTCCAAGCATTGTTCTAAATGA ATGTCAACAAATTCAGGGGATTTTGGAGGCAAATTTGGGAAAATGAGGCTTAAAAGCCTCAAAACAAGGGATGATATATTGACAGTGGATGAAGATTACCACACAGGAGTATCAGCCACAGTGCCATTCATATGGGAGTCCGAGCCAGGCACTCCCAAGGCCAATTTCAGGGACCATGGCTCACTCCTTTCCCCTCTCACGCCCCCACCATCCTATTTCTCCTCACCCTCACACACACCCTCCAAGCATAAATATAACACCAACCCACATCCCTCTCGAGCCAATTTCCTCACCTCGGTTTTCAAGAAGCTTTCTGTGAATAAGGCTCCTCTCCATCCGCTCTCTCCCGGCTCCTCGTCGTCGTCGTCGTCGACACTGACAAGCTCTGAGGGAGAGAGAGGAAGAAGCCCGAGGAGATTGTCGTTTGATTCGAGAGTGGACGAGAACGAGCACGAGGACGAAGAAGAGGAAGAGGAGAATTTCGACTCGCCTGTTTCGACTTTGTTCTTTGGACGTGGCGGAGGATCGAGTGATAAAGGATGCTATTGCTATCCAAAGTTGGTGAAGGTATTCTCCAAGCATTGTTCTAAATGA MSTNSGDFGGKFGKMRLKSLKTRDDILTVDEDYHTGVSATVPFIWESEPGTPKANFRDHGSLLSPLTPPPSYFSSPSHTPSKHKYNTNPHPSRANFLTSVFKKLSVNKAPLHPLSPGSSSSSSSTLTSSEGERGRSPRRLSFDSRVDENEHEDEEEEEENFDSPVSTLFFGRGGGSSDKGCYCYPKLVKVFSKHCSK Homology
BLAST of Carg07023-RA vs. NCBI nr
Match: KAG7037033.1 (hypothetical protein SDJN02_00654, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 396.7 bits (1018), Expect = 1.1e-106 Identity = 197/197 (100.00%), Postives = 197/197 (100.00%), Query Frame = 0
BLAST of Carg07023-RA vs. NCBI nr
Match: XP_022949317.1 (uncharacterized protein LOC111452704 [Cucurbita moschata]) HSP 1 Score: 390.6 bits (1002), Expect = 8.1e-105 Identity = 196/199 (98.49%), Postives = 197/199 (98.99%), Query Frame = 0
BLAST of Carg07023-RA vs. NCBI nr
Match: KAG6607361.1 (hypothetical protein SDJN03_00703, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 389.0 bits (998), Expect = 2.4e-104 Identity = 195/199 (97.99%), Postives = 197/199 (98.99%), Query Frame = 0
BLAST of Carg07023-RA vs. NCBI nr
Match: XP_022997732.1 (uncharacterized protein LOC111492604 [Cucurbita maxima]) HSP 1 Score: 386.3 bits (991), Expect = 1.5e-103 Identity = 194/199 (97.49%), Postives = 196/199 (98.49%), Query Frame = 0
BLAST of Carg07023-RA vs. NCBI nr
Match: XP_038894794.1 (uncharacterized protein LOC120083212 [Benincasa hispida] >XP_038894795.1 uncharacterized protein LOC120083212 [Benincasa hispida]) HSP 1 Score: 202.6 bits (514), Expect = 3.1e-48 Identity = 121/198 (61.11%), Postives = 150/198 (75.76%), Query Frame = 0
BLAST of Carg07023-RA vs. ExPASy TrEMBL
Match: A0A6J1GBP3 (uncharacterized protein LOC111452704 OS=Cucurbita moschata OX=3662 GN=LOC111452704 PE=4 SV=1) HSP 1 Score: 390.6 bits (1002), Expect = 3.9e-105 Identity = 196/199 (98.49%), Postives = 197/199 (98.99%), Query Frame = 0
BLAST of Carg07023-RA vs. ExPASy TrEMBL
Match: A0A6J1K5W9 (uncharacterized protein LOC111492604 OS=Cucurbita maxima OX=3661 GN=LOC111492604 PE=4 SV=1) HSP 1 Score: 386.3 bits (991), Expect = 7.4e-104 Identity = 194/199 (97.49%), Postives = 196/199 (98.49%), Query Frame = 0
BLAST of Carg07023-RA vs. ExPASy TrEMBL
Match: A0A0A0LYC9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G533640 PE=4 SV=1) HSP 1 Score: 189.1 bits (479), Expect = 1.7e-44 Identity = 117/200 (58.50%), Postives = 146/200 (73.00%), Query Frame = 0
BLAST of Carg07023-RA vs. ExPASy TrEMBL
Match: A0A5D3BF70 (NADPH oxidase activator OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold194G00550 PE=4 SV=1) HSP 1 Score: 187.6 bits (475), Expect = 5.1e-44 Identity = 119/200 (59.50%), Postives = 146/200 (73.00%), Query Frame = 0
BLAST of Carg07023-RA vs. ExPASy TrEMBL
Match: A0A1S3C5A7 (uncharacterized protein At4g00950 OS=Cucumis melo OX=3656 GN=LOC103497034 PE=4 SV=1) HSP 1 Score: 187.6 bits (475), Expect = 5.1e-44 Identity = 119/200 (59.50%), Postives = 146/200 (73.00%), Query Frame = 0
BLAST of Carg07023-RA vs. TAIR 10
Match: AT1G06930.1 (unknown protein; Has 4478 Blast hits to 355 proteins in 82 species: Archae - 0; Bacteria - 29; Metazoa - 379; Fungi - 125; Plants - 120; Viruses - 25; Other Eukaryotes - 3800 (source: NCBI BLink). ) HSP 1 Score: 63.9 bits (154), Expect = 1.6e-10 Identity = 66/182 (36.26%), Postives = 84/182 (46.15%), Query Frame = 0
BLAST of Carg07023-RA vs. TAIR 10
Match: AT2G40475.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G56260.2); Has 477 Blast hits to 219 proteins in 41 species: Archae - 0; Bacteria - 4; Metazoa - 91; Fungi - 61; Plants - 144; Viruses - 0; Other Eukaryotes - 177 (source: NCBI BLink). ) HSP 1 Score: 59.7 bits (143), Expect = 3.1e-09 Identity = 53/145 (36.55%), Postives = 77/145 (53.10%), Query Frame = 0
BLAST of Carg07023-RA vs. TAIR 10
Match: AT3G56260.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G40475.1). ) HSP 1 Score: 56.6 bits (135), Expect = 2.6e-08 Identity = 57/159 (35.85%), Postives = 77/159 (48.43%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
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