Carg03275-RA (mRNA) Silver-seed gourd (SMH-JMG-627) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGTGTAACTCGTCGAGTTCTATATCGTTTTCGGTGTTGAATTCTTGCAGGAAATTATTACTGGGGCTGGCCATACTAGTGCAGTGGACTGGTGGGCTTTGGGTAATTTTCATTATGCTCTTTTCTTATTGAAAATATTTGAGGATTATATTTGAATTCCCTTTACTTATGTTCCCTTGTGGCTTACAATTCAGGTATCCTTCTATATGAGATGCTCTATGGCTACACACCCTTTAGAGGGAAGACAAGGCAAAAGACTTTCGCTAACATTCTTCATAAGGATCTTAAGTTTCCAAGAAGTATATGGTAAAGACTTTCGAAGTATCTGACCCTTTACTAGCTGTTCCTAATATAGAATGTGAGGTCCCATATCGGTTGGAGAGGGAAACGAAGCATCCCTTATAAGGGTGTGGAAACCTCTCCCTAATAGACTCATTTTAAAACTGTGAGACTGACGGCGATACGTAACGGGTCAAAACGGACAATATCTGCTAGCGGTGGGTTTGGACTGTTACAAATGGTATCAGAGCCTGACACTAGACGGTGTGCCAATGAGGAAGCTGGGCCCCTAAGAGGGGGTGGATTGTGAGATCCTATATCAGTTGGAGAGGAGAATGAACCACTCCTTACAAGGGTGTGGAAACCTCTCCCTAATAGACGCGTTTTAAAACTGTGAGGTTGACAATGATACCTAACAGGCAAAAGTGGACAATATCTGCTAGCAATGGGTTTAAGTTGTTACAAATGGTATCAGTGCCTGACACCACTAGGGCCTCTAAGGGAGTGGATTGTGAGGTCCCACATTAGTTGGAGAGGGAAACGAAGCACCCCTTATAAGGGTGTGGAAACCTCTTCCTAACACACGCGTTTTTTAAAACTATGAGGCTGACGACAATACGTAACAGACAATATCTATTAGCAGTGGGTTTGGACTATTACACATGAATCCTCTCCTTTTAATGGGAATACATTTAAGTCTTCTATTTTCTTATGTTTCAGGCTAGTCTCAGTGTGAAGCAGTTAATCTGTAGGTTACTGCATAGAGACGCCAAAAACCGATTGGGTTCTCGAGAAGGAGCGAATGAAATCAAACGACATCCTTTCTTCCGAGGCGTTAATTGGGCGCTCGTTCGATGCATGGTAAACTACAAACACAATCTCAAAAGAGCACCTTCTACCGATGAAAATATTGAATATTTTATCATCATGTTCATGAAGAAGCTTCATTTCATAACATATCTGGTTATTTTTCAGCATCCTCCCGAGCTCGAAGCGTCTCTTTTCCAGACCGCCGAACCCGAAAAAGATGCTAATAATAAAGCTCCAGATTTGGATGTAAAAGCTCTTGACCTCAGTGTGTTCTGA ATGTGTAACTCGTCGAGTTCTATATCGTTTTCGGTGTTGAATTCTTGCAGGAAATTATTACTGGGGCTGGCCATACTAGTGCAGTGGACTGGTGGGCTTTGGCATCCTCCCGAGCTCGAAGCGTCTCTTTTCCAGACCGCCGAACCCGAAAAAGATGCTAATAATAAAGCTCCAGATTTGGATGTAAAAGCTCTTGACCTCAGTGTGTTCTGA ATGTGTAACTCGTCGAGTTCTATATCGTTTTCGGTGTTGAATTCTTGCAGGAAATTATTACTGGGGCTGGCCATACTAGTGCAGTGGACTGGTGGGCTTTGGCATCCTCCCGAGCTCGAAGCGTCTCTTTTCCAGACCGCCGAACCCGAAAAAGATGCTAATAATAAAGCTCCAGATTTGGATGTAAAAGCTCTTGACCTCAGTGTGTTCTGA MCNSSSSISFSVLNSCRKLLLGLAILVQWTGGLWHPPELEASLFQTAEPEKDANNKAPDLDVKALDLSVF Homology
BLAST of Carg03275-RA vs. NCBI nr
Match: KAG7010592.1 (hypothetical protein SDJN02_27386, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 143.3 bits (360), Expect = 8.0e-31 Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 0
BLAST of Carg03275-RA vs. NCBI nr
Match: KAG6570746.1 (Phototropin-1, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 76.6 bits (187), Expect = 9.2e-11 Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 0
BLAST of Carg03275-RA vs. NCBI nr
Match: XP_022943391.1 (phototropin-1-like [Cucurbita moschata]) HSP 1 Score: 75.1 bits (183), Expect = 2.7e-10 Identity = 35/36 (97.22%), Postives = 35/36 (97.22%), Query Frame = 0
BLAST of Carg03275-RA vs. NCBI nr
Match: XP_023511927.1 (phototropin-1-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 72.0 bits (175), Expect = 2.3e-09 Identity = 33/36 (91.67%), Postives = 34/36 (94.44%), Query Frame = 0
BLAST of Carg03275-RA vs. NCBI nr
Match: XP_022986761.1 (phototropin-1-like [Cucurbita maxima]) HSP 1 Score: 70.1 bits (170), Expect = 8.6e-09 Identity = 33/36 (91.67%), Postives = 34/36 (94.44%), Query Frame = 0
BLAST of Carg03275-RA vs. ExPASy TrEMBL
Match: A0A6J1FRK8 (phototropin-1-like OS=Cucurbita moschata OX=3662 GN=LOC111448171 PE=4 SV=1) HSP 1 Score: 75.1 bits (183), Expect = 1.3e-10 Identity = 35/36 (97.22%), Postives = 35/36 (97.22%), Query Frame = 0
BLAST of Carg03275-RA vs. ExPASy TrEMBL
Match: A0A6J1JC63 (phototropin-1-like OS=Cucurbita maxima OX=3661 GN=LOC111484421 PE=4 SV=1) HSP 1 Score: 70.1 bits (170), Expect = 4.2e-09 Identity = 33/36 (91.67%), Postives = 34/36 (94.44%), Query Frame = 0
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
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