Carg03275 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg03275
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptionphototropin-1-like
LocationCarg_Chr20: 2178296 .. 2179660 (-)
RNA-Seq ExpressionCarg03275
SyntenyCarg03275
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGTAACTCGTCGAGTTCTATATCGTTTTCGGTGTTGAATTCTTGCAGGAAATTATTACTGGGGCTGGCCATACTAGTGCAGTGGACTGGTGGGCTTTGGGTAATTTTCATTATGCTCTTTTCTTATTGAAAATATTTGAGGATTATATTTGAATTCCCTTTACTTATGTTCCCTTGTGGCTTACAATTCAGGTATCCTTCTATATGAGATGCTCTATGGCTACACACCCTTTAGAGGGAAGACAAGGCAAAAGACTTTCGCTAACATTCTTCATAAGGATCTTAAGTTTCCAAGAAGTATATGGTAAAGACTTTCGAAGTATCTGACCCTTTACTAGCTGTTCCTAATATAGAATGTGAGGTCCCATATCGGTTGGAGAGGGAAACGAAGCATCCCTTATAAGGGTGTGGAAACCTCTCCCTAATAGACTCATTTTAAAACTGTGAGACTGACGGCGATACGTAACGGGTCAAAACGGACAATATCTGCTAGCGGTGGGTTTGGACTGTTACAAATGGTATCAGAGCCTGACACTAGACGGTGTGCCAATGAGGAAGCTGGGCCCCTAAGAGGGGGTGGATTGTGAGATCCTATATCAGTTGGAGAGGAGAATGAACCACTCCTTACAAGGGTGTGGAAACCTCTCCCTAATAGACGCGTTTTAAAACTGTGAGGTTGACAATGATACCTAACAGGCAAAAGTGGACAATATCTGCTAGCAATGGGTTTAAGTTGTTACAAATGGTATCAGTGCCTGACACCACTAGGGCCTCTAAGGGAGTGGATTGTGAGGTCCCACATTAGTTGGAGAGGGAAACGAAGCACCCCTTATAAGGGTGTGGAAACCTCTTCCTAACACACGCGTTTTTTAAAACTATGAGGCTGACGACAATACGTAACAGACAATATCTATTAGCAGTGGGTTTGGACTATTACACATGAATCCTCTCCTTTTAATGGGAATACATTTAAGTCTTCTATTTTCTTATGTTTCAGGCTAGTCTCAGTGTGAAGCAGTTAATCTGTAGGTTACTGCATAGAGACGCCAAAAACCGATTGGGTTCTCGAGAAGGAGCGAATGAAATCAAACGACATCCTTTCTTCCGAGGCGTTAATTGGGCGCTCGTTCGATGCATGGTAAACTACAAACACAATCTCAAAAGAGCACCTTCTACCGATGAAAATATTGAATATTTTATCATCATGTTCATGAAGAAGCTTCATTTCATAACATATCTGGTTATTTTTCAGCATCCTCCCGAGCTCGAAGCGTCTCTTTTCCAGACCGCCGAACCCGAAAAAGATGCTAATAATAAAGCTCCAGATTTGGATGTAAAAGCTCTTGACCTCAGTGTGTTCTGA

mRNA sequence

ATGTGTAACTCGTCGAGTTCTATATCGTTTTCGGTGTTGAATTCTTGCAGGAAATTATTACTGGGGCTGGCCATACTAGTGCAGTGGACTGGTGGGCTTTGGCATCCTCCCGAGCTCGAAGCGTCTCTTTTCCAGACCGCCGAACCCGAAAAAGATGCTAATAATAAAGCTCCAGATTTGGATGTAAAAGCTCTTGACCTCAGTGTGTTCTGA

Coding sequence (CDS)

ATGTGTAACTCGTCGAGTTCTATATCGTTTTCGGTGTTGAATTCTTGCAGGAAATTATTACTGGGGCTGGCCATACTAGTGCAGTGGACTGGTGGGCTTTGGCATCCTCCCGAGCTCGAAGCGTCTCTTTTCCAGACCGCCGAACCCGAAAAAGATGCTAATAATAAAGCTCCAGATTTGGATGTAAAAGCTCTTGACCTCAGTGTGTTCTGA

Protein sequence

MCNSSSSISFSVLNSCRKLLLGLAILVQWTGGLWHPPELEASLFQTAEPEKDANNKAPDLDVKALDLSVF
Homology
[Close]
BLAST of Carg03275 vs. NCBI nr
Match: KAG7010592.1 (hypothetical protein SDJN02_27386, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 143.3 bits (360), Expect = 8.0e-31
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 0 

Query: 1  MCNSSSSISFSVLNSCRKLLLGLAILVQWTGGLWHPPELEASLFQTAEPEKDANNKAPDL 60
          MCNSSSSISFSVLNSCRKLLLGLAILVQWTGGLWHPPELEASLFQTAEPEKDANNKAPDL
Sbjct: 1  MCNSSSSISFSVLNSCRKLLLGLAILVQWTGGLWHPPELEASLFQTAEPEKDANNKAPDL 60

Query: 61 DVKALDLSVF 71
          DVKALDLSVF
Sbjct: 61 DVKALDLSVF 70

[Close]
BLAST of Carg03275 vs. NCBI nr
Match: KAG6570746.1 (Phototropin-1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 76.6 bits (187), Expect = 9.2e-11
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 0 

Query: 35   HPPELEASLFQTAEPEKDANNKAPDLDVKALDLSVF 71
            HPPELEASLFQTAEPEKDANNKAPDLDVKALDLSVF
Sbjct: 1147 HPPELEASLFQTAEPEKDANNKAPDLDVKALDLSVF 1182

[Close]
BLAST of Carg03275 vs. NCBI nr
Match: XP_022943391.1 (phototropin-1-like [Cucurbita moschata])

HSP 1 Score: 75.1 bits (183), Expect = 2.7e-10
Identity = 35/36 (97.22%), Postives = 35/36 (97.22%), Query Frame = 0 

Query: 35   HPPELEASLFQTAEPEKDANNKAPDLDVKALDLSVF 71
            HPPELEASLFQT EPEKDANNKAPDLDVKALDLSVF
Sbjct: 970  HPPELEASLFQTVEPEKDANNKAPDLDVKALDLSVF 1005

[Close]
BLAST of Carg03275 vs. NCBI nr
Match: XP_023511927.1 (phototropin-1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 72.0 bits (175), Expect = 2.3e-09
Identity = 33/36 (91.67%), Postives = 34/36 (94.44%), Query Frame = 0 

Query: 35   HPPELEASLFQTAEPEKDANNKAPDLDVKALDLSVF 71
            HPPELEASLF T EPEKDANNKAPDLD+KALDLSVF
Sbjct: 973  HPPELEASLFLTVEPEKDANNKAPDLDIKALDLSVF 1008

[Close]
BLAST of Carg03275 vs. NCBI nr
Match: XP_022986761.1 (phototropin-1-like [Cucurbita maxima])

HSP 1 Score: 70.1 bits (170), Expect = 8.6e-09
Identity = 33/36 (91.67%), Postives = 34/36 (94.44%), Query Frame = 0 

Query: 35   HPPELEASLFQTAEPEKDANNKAPDLDVKALDLSVF 71
            HPPELEASLFQ+ EPEKDANNKAP LDVKALDLSVF
Sbjct: 972  HPPELEASLFQSVEPEKDANNKAPVLDVKALDLSVF 1007

[Close]
BLAST of Carg03275 vs. ExPASy TrEMBL
Match: A0A6J1FRK8 (phototropin-1-like OS=Cucurbita moschata OX=3662 GN=LOC111448171 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 1.3e-10
Identity = 35/36 (97.22%), Postives = 35/36 (97.22%), Query Frame = 0 

Query: 35   HPPELEASLFQTAEPEKDANNKAPDLDVKALDLSVF 71
            HPPELEASLFQT EPEKDANNKAPDLDVKALDLSVF
Sbjct: 970  HPPELEASLFQTVEPEKDANNKAPDLDVKALDLSVF 1005

[Close]
BLAST of Carg03275 vs. ExPASy TrEMBL
Match: A0A6J1JC63 (phototropin-1-like OS=Cucurbita maxima OX=3661 GN=LOC111484421 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 4.2e-09
Identity = 33/36 (91.67%), Postives = 34/36 (94.44%), Query Frame = 0 

Query: 35   HPPELEASLFQTAEPEKDANNKAPDLDVKALDLSVF 71
            HPPELEASLFQ+ EPEKDANNKAP LDVKALDLSVF
Sbjct: 972  HPPELEASLFQSVEPEKDANNKAPVLDVKALDLSVF 1007

The following BLAST results are available for this feature:
BLAST of Carg03275 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7010592.18.0e-31100.00hypothetical protein SDJN02_27386, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6570746.19.2e-11100.00Phototropin-1, partial [Cucurbita argyrosperma subsp. sororia][more]
XP_022943391.12.7e-1097.22phototropin-1-like [Cucurbita moschata][more]
XP_023511927.12.3e-0991.67phototropin-1-like [Cucurbita pepo subsp. pepo][more]
XP_022986761.18.6e-0991.67phototropin-1-like [Cucurbita maxima][more]
BLAST of Carg03275 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg03275 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1FRK81.3e-1097.22phototropin-1-like OS=Cucurbita moschata OX=3662 GN=LOC111448171 PE=4 SV=1[more]
A0A6J1JC634.2e-0991.67phototropin-1-like OS=Cucurbita maxima OX=3661 GN=LOC111484421 PE=4 SV=1[more]
BLAST of Carg03275 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg03275-RACarg03275-RAmRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009785 blue light signaling pathway
biological_process GO:0018298 protein-chromophore linkage
biological_process GO:0006468 protein phosphorylation
molecular_function GO:0005524 ATP binding
molecular_function GO:0009882 blue light photoreceptor activity
molecular_function GO:0004672 protein kinase activity