CaUC03G060480.1 (mRNA) Watermelon (USVL246-FR2) v1

Overview
NameCaUC03G060480.1
TypemRNA
OrganismCitrullus amarus (Watermelon (USVL246-FR2) v1)
Description60s ribosomal protein l2
LocationCiama_Chr03: 20995273 .. 20995591 (+)
Sequence length261
RNA-Seq ExpressionCaUC03G060480.1
SyntenyCaUC03G060480.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCGGGTATCCAATCCTGCCGCTGAGATGTCAAGCAGATTCCTGAGCATTGACGAATGGCCGGCCACCTTTTACGTTAGAAGAGCAAAAGGCTCGGGGCATAGCTAGATGAACCAATGTGAATGAGTGTAAGCTTCGTGACCCAAACACGATTGGTGCTGACCACACTAGGTGCTACCATGGTAGCAAGAGAGGCCAGGCGGTGACAATTAAGAGGTTGTCACTGAGCATTCCTAGTCACACGGGAAGAGAGGTCAAATGGCAAGGCCATACGCCCGTTTGGCTCCTCGCAGAGTATAGCTCATATCCAAACATCTGA

mRNA sequence

ATGCGGGTATCCAATCCTGCCGCTGAGATGTCAAGCAGATTCCTGAGCATTGACGAATGGCCGGCCACCTTTTACCTTCGTGACCCAAACACGATTGGTGCTGACCACACTAGGTGCTACCATGGTAGCAAGAGAGGCCAGGCGGTGACAATTAAGAGGTTGTCACTGAGCATTCCTAGTCACACGGGAAGAGAGGTCAAATGGCAAGGCCATACGCCCGTTTGGCTCCTCGCAGAGTATAGCTCATATCCAAACATCTGA

Coding sequence (CDS)

ATGCGGGTATCCAATCCTGCCGCTGAGATGTCAAGCAGATTCCTGAGCATTGACGAATGGCCGGCCACCTTTTACCTTCGTGACCCAAACACGATTGGTGCTGACCACACTAGGTGCTACCATGGTAGCAAGAGAGGCCAGGCGGTGACAATTAAGAGGTTGTCACTGAGCATTCCTAGTCACACGGGAAGAGAGGTCAAATGGCAAGGCCATACGCCCGTTTGGCTCCTCGCAGAGTATAGCTCATATCCAAACATCTGA

Protein sequence

MRVSNPAAEMSSRFLSIDEWPATFYLRDPNTIGADHTRCYHGSKRGQAVTIKRLSLSIPSHTGREVKWQGHTPVWLLAEYSSYPNI
Homology
[Close]
BLAST of CaUC03G060480.1 vs. NCBI nr
Match: KAA0032895.1 (60s ribosomal protein l2 [Cucumis melo var. makuwa])

HSP 1 Score: 167.5 bits (423), Expect = 4.9e-38
Identity = 76/85 (89.41%), Postives = 79/85 (92.94%), Query Frame = 0 

Query: 1  MRVSNPAAEMSSRFLSIDEWPATFYLRDPNTIGADHTRCYHGSKRGQAVTIKRLSLSIPS 60
          MRVSNPAAEMSS FL +DEWPATF LRDP TIGADHTRCY GSKRGQAVTI+R SLSIPS
Sbjct: 1  MRVSNPAAEMSSGFLGVDEWPATFDLRDPKTIGADHTRCYRGSKRGQAVTIERFSLSIPS 60

Query: 61 HTGREVKWQGHTPVWLLAEYSSYPN 86
          HTGREVKWQGHTPVWLLAEYSS+PN
Sbjct: 61 HTGREVKWQGHTPVWLLAEYSSHPN 85

[Close]
BLAST of CaUC03G060480.1 vs. NCBI nr
Match: THU42354.1 (hypothetical protein C4D60_Mb00t00470 [Musa balbisiana])

HSP 1 Score: 114.4 bits (285), Expect = 4.9e-22
Identity = 55/66 (83.33%), Postives = 57/66 (86.36%), Query Frame = 0 

Query: 1  MRVSNPAAEMSSRFLSIDEWPATFYLRDPNTIGADHTRCYHGSKRGQAVTIKRLSLSIPS 60
          MRVSNPAAEMSS F  +DEWPAT  LR PNTIGADHTR Y GSKRGQAVTI RLSLSIPS
Sbjct: 1  MRVSNPAAEMSSGFHGLDEWPATIVLRCPNTIGADHTRSYRGSKRGQAVTIDRLSLSIPS 60

Query: 61 HTGREV 67
          HTGRE+
Sbjct: 61 HTGREL 66

[Close]
BLAST of CaUC03G060480.1 vs. NCBI nr
Match: KAA0051145.1 (ribosomal protein L2 [Cucumis melo var. makuwa] >TYK03754.1 ribosomal protein L2 [Cucumis melo var. makuwa])

HSP 1 Score: 105.1 bits (261), Expect = 3.0e-19
Identity = 45/60 (75.00%), Postives = 51/60 (85.00%), Query Frame = 0 

Query: 26 LRDPNTIGADHTRCYHGSKRGQAVTIKRLSLSIPSHTGREVKWQGHTPVWLLAEYSSYPN 85
          L +  TIG DHTRCYHGSKRGQ +TI+R SLSIPSHTGR+VKWQGH PVWL+AEYS + N
Sbjct: 9  LHNLKTIGVDHTRCYHGSKRGQTMTIERFSLSIPSHTGRKVKWQGHMPVWLIAEYSLHLN 68

[Close]
BLAST of CaUC03G060480.1 vs. NCBI nr
Match: PHT74826.1 (60S ribosomal protein L2, mitochondrial [Capsicum annuum])

HSP 1 Score: 88.6 bits (218), Expect = 2.9e-14
Identity = 40/45 (88.89%), Postives = 42/45 (93.33%), Query Frame = 0 

Query: 26  LRDPNTIGADHTRCYHGSKRGQAVTIKRLSLSIPSHTGREVKWQG 71
           LR  NTIGADHTRCYHGSKRGQAVTI+RLSLSIPSHTG+E KWQG
Sbjct: 233 LRCLNTIGADHTRCYHGSKRGQAVTIERLSLSIPSHTGKEFKWQG 277

[Close]
BLAST of CaUC03G060480.1 vs. NCBI nr
Match: YP_009242031.1 (ribosomal protein L2 [Oryza minuta] >AMQ23378.1 ribosomal protein L2 [Oryza minuta])

HSP 1 Score: 88.2 bits (217), Expect = 3.8e-14
Identity = 40/48 (83.33%), Postives = 41/48 (85.42%), Query Frame = 0 

Query: 26  LRDPNTIGADHTRCYHGSKRGQAVTIKRLSLSIPSHTGREVKWQGHTP 74
           LR PNTIGADHTRCY GSKRG A TI+RLSLSIPSHTGREVKWQ   P
Sbjct: 357 LRCPNTIGADHTRCYRGSKRGPAATIERLSLSIPSHTGREVKWQSKRP 404

[Close]
BLAST of CaUC03G060480.1 vs. ExPASy TrEMBL
Match: A0A5A7SUL2 (60s ribosomal protein l2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold81G00880 PE=4 SV=1)

HSP 1 Score: 167.5 bits (423), Expect = 2.4e-38
Identity = 76/85 (89.41%), Postives = 79/85 (92.94%), Query Frame = 0 

Query: 1  MRVSNPAAEMSSRFLSIDEWPATFYLRDPNTIGADHTRCYHGSKRGQAVTIKRLSLSIPS 60
          MRVSNPAAEMSS FL +DEWPATF LRDP TIGADHTRCY GSKRGQAVTI+R SLSIPS
Sbjct: 1  MRVSNPAAEMSSGFLGVDEWPATFDLRDPKTIGADHTRCYRGSKRGQAVTIERFSLSIPS 60

Query: 61 HTGREVKWQGHTPVWLLAEYSSYPN 86
          HTGREVKWQGHTPVWLLAEYSS+PN
Sbjct: 61 HTGREVKWQGHTPVWLLAEYSSHPN 85

[Close]
BLAST of CaUC03G060480.1 vs. ExPASy TrEMBL
Match: A0A4S8I504 (Uncharacterized protein OS=Musa balbisiana OX=52838 GN=C4D60_Mb00t00470 PE=4 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 2.4e-22
Identity = 55/66 (83.33%), Postives = 57/66 (86.36%), Query Frame = 0 

Query: 1  MRVSNPAAEMSSRFLSIDEWPATFYLRDPNTIGADHTRCYHGSKRGQAVTIKRLSLSIPS 60
          MRVSNPAAEMSS F  +DEWPAT  LR PNTIGADHTR Y GSKRGQAVTI RLSLSIPS
Sbjct: 1  MRVSNPAAEMSSGFHGLDEWPATIVLRCPNTIGADHTRSYRGSKRGQAVTIDRLSLSIPS 60

Query: 61 HTGREV 67
          HTGRE+
Sbjct: 61 HTGREL 66

[Close]
BLAST of CaUC03G060480.1 vs. ExPASy TrEMBL
Match: A0A5D3BXG0 (Ribosomal protein L2 (Mitochondrion) OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold863G001340 PE=4 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 1.4e-19
Identity = 45/60 (75.00%), Postives = 51/60 (85.00%), Query Frame = 0 

Query: 26 LRDPNTIGADHTRCYHGSKRGQAVTIKRLSLSIPSHTGREVKWQGHTPVWLLAEYSSYPN 85
          L +  TIG DHTRCYHGSKRGQ +TI+R SLSIPSHTGR+VKWQGH PVWL+AEYS + N
Sbjct: 9  LHNLKTIGVDHTRCYHGSKRGQTMTIERFSLSIPSHTGRKVKWQGHMPVWLIAEYSLHLN 68

[Close]
BLAST of CaUC03G060480.1 vs. ExPASy TrEMBL
Match: A0A2G2YYL5 (60S ribosomal protein L2, mitochondrial OS=Capsicum annuum OX=4072 GN=T459_22103 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 1.4e-14
Identity = 40/45 (88.89%), Postives = 42/45 (93.33%), Query Frame = 0 

Query: 26  LRDPNTIGADHTRCYHGSKRGQAVTIKRLSLSIPSHTGREVKWQG 71
           LR  NTIGADHTRCYHGSKRGQAVTI+RLSLSIPSHTG+E KWQG
Sbjct: 233 LRCLNTIGADHTRCYHGSKRGQAVTIERLSLSIPSHTGKEFKWQG 277

[Close]
BLAST of CaUC03G060480.1 vs. ExPASy TrEMBL
Match: A0A142D7X8 (Ribosomal protein L2 OS=Oryza minuta OX=63629 GN=rpl2 PE=3 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 1.8e-14
Identity = 40/48 (83.33%), Postives = 41/48 (85.42%), Query Frame = 0 

Query: 26  LRDPNTIGADHTRCYHGSKRGQAVTIKRLSLSIPSHTGREVKWQGHTP 74
           LR PNTIGADHTRCY GSKRG A TI+RLSLSIPSHTGREVKWQ   P
Sbjct: 357 LRCPNTIGADHTRCYRGSKRGPAATIERLSLSIPSHTGREVKWQSKRP 404

The following BLAST results are available for this feature:
BLAST of CaUC03G060480.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0032895.14.9e-3889.4160s ribosomal protein l2 [Cucumis melo var. makuwa][more]
THU42354.14.9e-2283.33hypothetical protein C4D60_Mb00t00470 [Musa balbisiana][more]
KAA0051145.13.0e-1975.00ribosomal protein L2 [Cucumis melo var. makuwa] >TYK03754.1 ribosomal protein L2... [more]
PHT74826.12.9e-1488.8960S ribosomal protein L2, mitochondrial [Capsicum annuum][more]
YP_009242031.13.8e-1483.33ribosomal protein L2 [Oryza minuta] >AMQ23378.1 ribosomal protein L2 [Oryza minu... [more]
BLAST of CaUC03G060480.1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CaUC03G060480.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7SUL22.4e-3889.4160s ribosomal protein l2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffol... [more]
A0A4S8I5042.4e-2283.33Uncharacterized protein OS=Musa balbisiana OX=52838 GN=C4D60_Mb00t00470 PE=4 SV=... [more]
A0A5D3BXG01.4e-1975.00Ribosomal protein L2 (Mitochondrion) OS=Cucumis melo var. makuwa OX=1194695 GN=E... [more]
A0A2G2YYL51.4e-1488.8960S ribosomal protein L2, mitochondrial OS=Capsicum annuum OX=4072 GN=T459_22103... [more]
A0A142D7X81.8e-1483.33Ribosomal protein L2 OS=Oryza minuta OX=63629 GN=rpl2 PE=3 SV=1[more]
BLAST of CaUC03G060480.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CaUC03G060480CaUC03G060480gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CaUC03G060480.1-exonCaUC03G060480.1-exon-Ciama_Chr03:20995273..20995347exon
CaUC03G060480.1-exonCaUC03G060480.1-exon-Ciama_Chr03:20995406..20995591exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CaUC03G060480.1-cdsCaUC03G060480.1-cds-Ciama_Chr03:20995273..20995347CDS
CaUC03G060480.1-cdsCaUC03G060480.1-cds-Ciama_Chr03:20995406..20995591CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CaUC03G060480.1CaUC03G060480.1-proteinpolypeptide


GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0032543 mitochondrial translation
cellular_component GO:0005762 mitochondrial large ribosomal subunit
molecular_function GO:0003723 RNA binding
molecular_function GO:0003735 structural constituent of ribosome