CSPI06G24180.3 (mRNA) Cucumber (PI 183967) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.CCCATAAAGCATTTACAACTTCAACATTCTGCAAGCACAAAGTACAAACTGATTTGTTTTCTGTCTTTGATCTTGAATTCAATTGATGAATATCTGGATAAGTAAACCAGCTTAGCTTAAAAGACCTGAAGAAATTAAAGTTGTAGAGCATTTTACATCCAATGGAGTGATAAGCCTCATTCAAGCGATGATTCAGCAATGCTCTGCACAAGGATTGGAAATAGTCAAAGTATGATATGGGAAATGTTCTGTGATCATAATTGGAAGGAAATGAAAAACATAGTTAATTGACTTAATGATGGCACTTGCTGCTGCTTGAGGCTAAGCTTTTTTTGCCGATCATCTCCTAGCCTCCCCCCTGTATTTTCTCGCAGTTTCCTGAATAGTGAAGACTAACCCACCCTCTCATCTGACAGAAAACTATTGCCTCCACTCTCATCTCAGACCATTTAATTTAATAAGACTGTAAGCAAAATTGCTTCAGCTGGTTATTGAATGTTCTTTTTCTTTTTGTTCTCTCACACGTTATTTTAAACCTAAAGAATAAAACTGTTTTCCCCTCTCTTCAGAAAAGAATATTGGTCAAAGATGATTTTTAAGGTTTTCAAAATGAACAATGTTTAATTCTTCTTCTTTTCCTTTCGATGCCTTCTTTTCAGTGCTTTCATCATAGACTGATGGCTTCTTCTCCGTTTGCCCAACATTTGTTTTGCATGGTCTTGTATTCTAGTCGATTCAATCCTTATGTCTTATCTAACATGTGTATTCCTTAAGAAGGTATGCAGTCAAAGTCTAAAAGTGTGAATCAACTAGAATCTGAACCACCAAATATGCAGCAGACTAGTAGTTTTTCAGAACCTTGGTGGCGTAGTATTGGGTACAATCATATCTCTCCGCCTGCAGCTGGAGGAAATGTGTCCAATTCAACATCACTGGAATGCACTAATGGTGCTTCAGAATCAAATGATGGTCAGTCAATGTCAAATGATGATTTAAATGAAGAAGATGATGATGAGACCACAAAAGATTCACATGGTATGGCCCTCAACTTTGTGGTGTTGCTTGCTAAATCGTGTTATAGTTCAAAGAACGGCACTTATTGTTTTTAGCCTCTTTGGTTATGAATTGGAATTATTATACATTTGAGGTCAATGACAATCTAGCCTCATTAACATATTATTGTCAAATTCACCAGCAAGTTTTGGGCAAGTACAGCACAACTGTCAGCATGCTGTTTCTGCTGCACCTATAGTGCATAGTGGATGTATCACGCAACCTCCTCAGCTTGAACTTGTAGGCCACTCTATTGTGAGTTCAATTTGCAAGTCTGGTTGATTATTATTATTTAAAAAAAAAAAAATTAGAGACATTCTTCTGACTCTTGGAGTCCAGGTTTTGAATATTGGACAACATTGGTGGGATTATGTGCTTATTTTAATCTGTTTTAGGCATGTGCATCAAACCCATATCAGGATCCTTATTACGCGGGAGTGATGGCTGCCTATGGGCATCAACCGGTACGTAGGTTAAAATCATAGAAGATCAGTCATGAGATATTTAGATGGTACATATAGATAAGTTATATGTATATATTTCTTATAATTTTTGCACCATATACACAAACTTTTTCGGTGTATAGTAGCCATGGGTAATTTTGATAGTACTCTTTACTTTTTTTTTCCTTTCCTATTGCTTTACCTTTTCAAGTATTCATGAACTTTCAATGTTGTTCCTTGTTCAGATTTTCACTCTCTCAAATTATTTCAATTAAAATAACATTTGACAGTACAGAGTTTATGAGCGTATCAAGCGAACTAACTGAAAATTTCCAGTTTCTTGGAAGAGGTTGTAGTGTAATAGTTGCCATATCTTGGCCTGAAATTATTTATTTATTGGCCACAACGACAAGGTCGTATGTCAACGTCTGGGGTCATTGTGCAATGTTACCCCTTTTTCCTTATATGTAAGAATTAAAGCTTGCCCTTGACAATCCTTCTTATGGTAGGGTTACCCTCCTTTTCTTGGGATGCCACATGCTAGAATGGCATTGCCCCTTGAGGTGACACAGGAGCCTGTTTTTGTGAATGCTAAACAATATCAAGGGATTCTAAGGCGAAGACAGGCACGTGCTAAAGCAGAGGTTGAGAACAAACTAATAAAAGTTAGAAAGGTACGACTGCTATTTAGATGATCGCCTTTCTTGTACTACAACTTGTCTCTTATACATGTTAAAGTAGCTGGAAATCTAGCAATGCCTTCTAATTGTATTGCGCTTTTAATGAAGCTCATTCTTCCCTTTGGTTCAAATTTGATTAGGTACTCCATAAAATTCTCTCACCTGAGTAGTTTTCTATTGTTTAATTACCATAAACTTGTGAGTGAAGGGTGACTAAAAAATTATTTTGTTGTGCTTGACAGTGGGTGAATGTACTCACCTAGGCTTTTTTAGCATAGGTATCATCAGTAATTTTTCTGGGAATATACTTGATTTATTTACCTATTCTACCCTGAATATTTTGAATGCTCAGGATATCATTATTGCCAAATGATTAATATTCCATCTACCCACATTAAAAAGGTTTGCTTTATTCTCATAATCAGATTCTGCGCAAGTGGGAAGTAACCTAAGTATTCTAAACTGGCTGCAAGGATTGTTGAGTGCTAAAATGAATGTGGTTAGGTACCAAATAGCACACTTATATGAATTGCCAAGTCGTTGTTTGAAGACCTTACAAAACTTATAAAAAAATTCAAAGAGGGCATAATATTGCATTGTAATTATGGTTGTGTAAGACCGGAGGTTCTCAACTGAAGGTAAAATCACAACTGAGTTGGGATCAAAGCATTTACGTTTTAAATACTGAGTCAAAGCTGGTCTTTCACAATTTCATGATTTCTCCTTGCCGTGTATAGTTGTTTTTATAGCTAATTCATTACCATGTGAGATGAGATGGCTTGGACACGGTTAGTTTTGAAAAATCAAATGTTGTTGAGTGTTGGATGGTCATTGAGCGGGTTATTGTTTCTGTATGTTTGCAGAGTGAAGACTGTTCACACTCCACCTCTTTCTCCCTCCATTTGAACAATTCTTTTGCTGTAGCTTATATCTGGGTATGCATGTTTCTGAAATTCCTCTAATATTTAGCCTGTGTTGTGTTATGCAGCCATATCTGCATGAATCTCGTCACCAGCATGCCATGAGACGGGCAAGGGGTAGTGGAGGACGATTTGCCAAGAAAAATGAAACTAATTCCTTGGGTTCTACTATGAAGGACAAGGACTCCGGTTCTGGTCAAGCTATCTCATCGCACTCTGCTGGTTCATCTGGCTCTGATGCAGCACCTTGTGCCTTGGCTGAAACCTGGAATTCTTCCAATGGCCAACAAGAATCAAGGACCCAGTTGCATGAAGCATATGAAGCTCGAAGTTATATGAATGGAAGTAGCCAATTTCATAATTACAGTAGCTTCCAAGCTTCTTCCTATGGTTTACGATCTGGTGAGAGAGGTGATGATGGAGACTGCTCAGGACAGCAGCGAAGTATCTCAGAAAATCAAGCTGCACAGAGGCGTCTTGCCATCAAGTGAACCTCCTGGTTGCATAAATATGGGCTGCCTCTCTTGGGGCTACATTCCCTGGCAGTTCTCTGCTAGGCGGCAAATCATTCTTGGCTTTGTTCTGGTGCTTGTTCCTTAATCGTAAAGGAGATGGATAATATAAGTTGGCCATTTGGACCTTAGTTCTAGTTAAGTCCTTGGATGCTTTATTCCATCAACCTCCCCCATTTTTAACTTGTGTATAGAACAGACTCCATAGATTTCAAACGCTGTTCTTCTCAATTTCCAAACAACCTTGTTTAATGGAATGCTTATCTGTTATGTACTTGTGAATGTGTCGTGAACTTTGATCCATAATTTGGTTGCTAATTTCATATAAGTTCTCCAGGTACCAAATATTTCTTGCTATTATATGCATCCTGATTTCAGCGTCCACTAGGAATATTGGAAAATGATCTAAACTTGATGATGCTTATTGGTTT CCCATAAAGCATTTACAACTTCAACATTCTGCAAGCACAAAAAGGTATGCAGTCAAAGTCTAAAAGTGTGAATCAACTAGAATCTGAACCACCAAATATGCAGCAGACTAGTAGTTTTTCAGAACCTTGGTGGCGTAGTATTGGGTACAATCATATCTCTCCGCCTGCAGCTGGAGGAAATGTGTCCAATTCAACATCACTGGAATGCACTAATGGTGCTTCAGAATCAAATGATGGTCAGTCAATGTCAAATGATGATTTAAATGAAGAAGATGATGATGAGACCACAAAAGATTCACATGCAAGTTTTGGGCAAGTACAGCACAACTGTCAGCATGCTGTTTCTGCTGCACCTATAGTGCATAGTGGATGTATCACGCAACCTCCTCAGCTTGAACTTGTAGGCCACTCTATTGCATGTGCATCAAACCCATATCAGGATCCTTATTACGCGGGAGTGATGGCTGCCTATGGGCATCAACCGGGTTACCCTCCTTTTCTTGGGATGCCACATGCTAGAATGGCATTGCCCCTTGAGGTGACACAGGAGCCTGTTTTTGTGAATGCTAAACAATATCAAGGGATTCTAAGGCGAAGACAGGCACGTGCTAAAGCAGAGGTTGAGAACAAACTAATAAAAGTTAGAAAGCCATATCTGCATGAATCTCGTCACCAGCATGCCATGAGACGGGCAAGGGGTAGTGGAGGACGATTTGCCAAGAAAAATGAAACTAATTCCTTGGGTTCTACTATGAAGGACAAGGACTCCGGTTCTGGTCAAGCTATCTCATCGCACTCTGCTGGTTCATCTGGCTCTGATGCAGCACCTTGTGCCTTGGCTGAAACCTGGAATTCTTCCAATGGCCAACAAGAATCAAGGACCCAGTTGCATGAAGCATATGAAGCTCGAAGTTATATGAATGGAAGTAGCCAATTTCATAATTACAGTAGCTTCCAAGCTTCTTCCTATGGTTTACGATCTGGTGAGAGAGGTGATGATGGAGACTGCTCAGGACAGCAGCGAAGTATCTCAGAAAATCAAGCTGCACAGAGGCGTCTTGCCATCAAGTGAACCTCCTGGTTGCATAAATATGGGCTGCCTCTCTTGGGGCTACATTCCCTGGCAGTTCTCTGCTAGGCGGCAAATCATTCTTGGCTTTGTTCTGGTGCTTGTTCCTTAATCGTAAAGGAGATGGATAATATAAGTTGGCCATTTGGACCTTAGTTCTAGTTAAGTCCTTGGATGCTTTATTCCATCAACCTCCCCCATTTTTAACTTGTGTATAGAACAGACTCCATAGATTTCAAACGCTGTTCTTCTCAATTTCCAAACAACCTTGTTTAATGGAATGCTTATCTGTTATGTACTTGTGAATGTGTCGTGAACTTTGATCCATAATTTGGTTGCTAATTTCATATAAGTTCTCCAGGTACCAAATATTTCTTGCTATTATATGCATCCTGATTTCAGCGTCCACTAGGAATATTGGAAAATGATCTAAACTTGATGATGCTTATTGGTTT ATGCAGTCAAAGTCTAAAAGTGTGAATCAACTAGAATCTGAACCACCAAATATGCAGCAGACTAGTAGTTTTTCAGAACCTTGGTGGCGTAGTATTGGGTACAATCATATCTCTCCGCCTGCAGCTGGAGGAAATGTGTCCAATTCAACATCACTGGAATGCACTAATGGTGCTTCAGAATCAAATGATGGTCAGTCAATGTCAAATGATGATTTAAATGAAGAAGATGATGATGAGACCACAAAAGATTCACATGCAAGTTTTGGGCAAGTACAGCACAACTGTCAGCATGCTGTTTCTGCTGCACCTATAGTGCATAGTGGATGTATCACGCAACCTCCTCAGCTTGAACTTGTAGGCCACTCTATTGCATGTGCATCAAACCCATATCAGGATCCTTATTACGCGGGAGTGATGGCTGCCTATGGGCATCAACCGGGTTACCCTCCTTTTCTTGGGATGCCACATGCTAGAATGGCATTGCCCCTTGAGGTGACACAGGAGCCTGTTTTTGTGAATGCTAAACAATATCAAGGGATTCTAAGGCGAAGACAGGCACGTGCTAAAGCAGAGGTTGAGAACAAACTAATAAAAGTTAGAAAGCCATATCTGCATGAATCTCGTCACCAGCATGCCATGAGACGGGCAAGGGGTAGTGGAGGACGATTTGCCAAGAAAAATGAAACTAATTCCTTGGGTTCTACTATGAAGGACAAGGACTCCGGTTCTGGTCAAGCTATCTCATCGCACTCTGCTGGTTCATCTGGCTCTGATGCAGCACCTTGTGCCTTGGCTGAAACCTGGAATTCTTCCAATGGCCAACAAGAATCAAGGACCCAGTTGCATGAAGCATATGAAGCTCGAAGTTATATGAATGGAAGTAGCCAATTTCATAATTACAGTAGCTTCCAAGCTTCTTCCTATGGTTTACGATCTGGTGAGAGAGGTGATGATGGAGACTGCTCAGGACAGCAGCGAAGTATCTCAGAAAATCAAGCTGCACAGAGGCGTCTTGCCATCAAGTGA MQSKSKSVNQLESEPPNMQQTSSFSEPWWRSIGYNHISPPAAGGNVSNSTSLECTNGASESNDGQSMSNDDLNEEDDDETTKDSHASFGQVQHNCQHAVSAAPIVHSGCITQPPQLELVGHSIACASNPYQDPYYAGVMAAYGHQPGYPPFLGMPHARMALPLEVTQEPVFVNAKQYQGILRRRQARAKAEVENKLIKVRKPYLHESRHQHAMRRARGSGGRFAKKNETNSLGSTMKDKDSGSGQAISSHSAGSSGSDAAPCALAETWNSSNGQQESRTQLHEAYEARSYMNGSSQFHNYSSFQASSYGLRSGERGDDGDCSGQQRSISENQAAQRRLAIK* Homology
BLAST of CSPI06G24180.3 vs. ExPASy Swiss-Prot
Match: Q9LXV5 (Nuclear transcription factor Y subunit A-1 OS=Arabidopsis thaliana OX=3702 GN=NFYA1 PE=2 SV=1) HSP 1 Score: 207.2 bits (526), Expect = 2.9e-52 Identity = 139/278 (50.00%), Postives = 173/278 (62.23%), Query Frame = 0
BLAST of CSPI06G24180.3 vs. ExPASy Swiss-Prot
Match: Q945M9 (Nuclear transcription factor Y subunit A-9 OS=Arabidopsis thaliana OX=3702 GN=NFYA9 PE=1 SV=1) HSP 1 Score: 193.0 bits (489), Expect = 5.7e-48 Identity = 159/347 (45.82%), Postives = 192/347 (55.33%), Query Frame = 0
BLAST of CSPI06G24180.3 vs. ExPASy Swiss-Prot
Match: Q84JP1 (Nuclear transcription factor Y subunit A-7 OS=Arabidopsis thaliana OX=3702 GN=NFYA7 PE=1 SV=1) HSP 1 Score: 106.3 bits (264), Expect = 7.0e-22 Identity = 65/140 (46.43%), Postives = 92/140 (65.71%), Query Frame = 0
BLAST of CSPI06G24180.3 vs. ExPASy Swiss-Prot
Match: Q8VY64 (Nuclear transcription factor Y subunit A-4 OS=Arabidopsis thaliana OX=3702 GN=NFYA4 PE=1 SV=1) HSP 1 Score: 104.0 bits (258), Expect = 3.5e-21 Identity = 63/128 (49.22%), Postives = 76/128 (59.38%), Query Frame = 0
BLAST of CSPI06G24180.3 vs. ExPASy Swiss-Prot
Match: Q9SYH4 (Nuclear transcription factor Y subunit A-5 OS=Arabidopsis thaliana OX=3702 GN=NFYA5 PE=2 SV=1) HSP 1 Score: 99.4 bits (246), Expect = 8.5e-20 Identity = 74/217 (34.10%), Postives = 111/217 (51.15%), Query Frame = 0
BLAST of CSPI06G24180.3 vs. ExPASy TrEMBL
Match: A0A0A0KEL9 (Nuclear transcription factor Y subunit OS=Cucumis sativus OX=3659 GN=Csa_6G439960 PE=3 SV=1) HSP 1 Score: 657.1 bits (1694), Expect = 3.9e-185 Identity = 341/341 (100.00%), Postives = 341/341 (100.00%), Query Frame = 0
BLAST of CSPI06G24180.3 vs. ExPASy TrEMBL
Match: A0A1S3BNK4 (Nuclear transcription factor Y subunit OS=Cucumis melo OX=3656 GN=LOC103491506 PE=3 SV=1) HSP 1 Score: 639.4 bits (1648), Expect = 8.5e-180 Identity = 331/341 (97.07%), Postives = 339/341 (99.41%), Query Frame = 0
BLAST of CSPI06G24180.3 vs. ExPASy TrEMBL
Match: A0A1S4DXQ9 (Nuclear transcription factor Y subunit OS=Cucumis melo OX=3656 GN=LOC103491506 PE=3 SV=1) HSP 1 Score: 623.2 bits (1606), Expect = 6.3e-175 Identity = 326/341 (95.60%), Postives = 334/341 (97.95%), Query Frame = 0
BLAST of CSPI06G24180.3 vs. ExPASy TrEMBL
Match: A0A6J1JHB5 (Nuclear transcription factor Y subunit OS=Cucurbita maxima OX=3661 GN=LOC111484375 PE=3 SV=1) HSP 1 Score: 601.3 bits (1549), Expect = 2.6e-168 Identity = 315/343 (91.84%), Postives = 328/343 (95.63%), Query Frame = 0
BLAST of CSPI06G24180.3 vs. ExPASy TrEMBL
Match: A0A6J1FTP1 (Nuclear transcription factor Y subunit OS=Cucurbita moschata OX=3662 GN=LOC111448699 PE=3 SV=1) HSP 1 Score: 597.4 bits (1539), Expect = 3.7e-167 Identity = 314/343 (91.55%), Postives = 327/343 (95.34%), Query Frame = 0
BLAST of CSPI06G24180.3 vs. NCBI nr
Match: XP_011657641.1 (nuclear transcription factor Y subunit A-1 isoform X1 [Cucumis sativus] >XP_011657642.1 nuclear transcription factor Y subunit A-1 isoform X1 [Cucumis sativus] >XP_031743004.1 nuclear transcription factor Y subunit A-1 isoform X1 [Cucumis sativus] >XP_031743005.1 nuclear transcription factor Y subunit A-1 isoform X1 [Cucumis sativus] >KGN48130.1 hypothetical protein Csa_003198 [Cucumis sativus]) HSP 1 Score: 657.1 bits (1694), Expect = 8.1e-185 Identity = 341/341 (100.00%), Postives = 341/341 (100.00%), Query Frame = 0
BLAST of CSPI06G24180.3 vs. NCBI nr
Match: XP_011657643.1 (nuclear transcription factor Y subunit A-1 isoform X2 [Cucumis sativus] >XP_011657644.1 nuclear transcription factor Y subunit A-1 isoform X2 [Cucumis sativus]) HSP 1 Score: 641.0 bits (1652), Expect = 6.0e-180 Identity = 336/341 (98.53%), Postives = 336/341 (98.53%), Query Frame = 0
BLAST of CSPI06G24180.3 vs. NCBI nr
Match: XP_008449708.1 (PREDICTED: nuclear transcription factor Y subunit A-1-like isoform X1 [Cucumis melo] >XP_008449709.1 PREDICTED: nuclear transcription factor Y subunit A-1-like isoform X1 [Cucumis melo]) HSP 1 Score: 639.4 bits (1648), Expect = 1.7e-179 Identity = 331/341 (97.07%), Postives = 339/341 (99.41%), Query Frame = 0
BLAST of CSPI06G24180.3 vs. NCBI nr
Match: XP_031743006.1 (nuclear transcription factor Y subunit A-1 isoform X3 [Cucumis sativus]) HSP 1 Score: 632.5 bits (1630), Expect = 2.1e-177 Identity = 333/341 (97.65%), Postives = 333/341 (97.65%), Query Frame = 0
BLAST of CSPI06G24180.3 vs. NCBI nr
Match: XP_008449711.1 (PREDICTED: nuclear transcription factor Y subunit A-1-like isoform X2 [Cucumis melo] >XP_016900766.1 PREDICTED: nuclear transcription factor Y subunit A-1-like isoform X2 [Cucumis melo]) HSP 1 Score: 623.2 bits (1606), Expect = 1.3e-174 Identity = 326/341 (95.60%), Postives = 334/341 (97.95%), Query Frame = 0
BLAST of CSPI06G24180.3 vs. TAIR 10
Match: AT5G12840.2 (nuclear factor Y, subunit A1 ) HSP 1 Score: 208.0 bits (528), Expect = 1.2e-53 Identity = 139/277 (50.18%), Postives = 173/277 (62.45%), Query Frame = 0
BLAST of CSPI06G24180.3 vs. TAIR 10
Match: AT5G12840.4 (nuclear factor Y, subunit A1 ) HSP 1 Score: 208.0 bits (528), Expect = 1.2e-53 Identity = 139/277 (50.18%), Postives = 173/277 (62.45%), Query Frame = 0
BLAST of CSPI06G24180.3 vs. TAIR 10
Match: AT5G12840.1 (nuclear factor Y, subunit A1 ) HSP 1 Score: 207.2 bits (526), Expect = 2.1e-53 Identity = 139/278 (50.00%), Postives = 173/278 (62.23%), Query Frame = 0
BLAST of CSPI06G24180.3 vs. TAIR 10
Match: AT5G12840.3 (nuclear factor Y, subunit A1 ) HSP 1 Score: 207.2 bits (526), Expect = 2.1e-53 Identity = 139/278 (50.00%), Postives = 173/278 (62.23%), Query Frame = 0
BLAST of CSPI06G24180.3 vs. TAIR 10
Match: AT3G20910.1 (nuclear factor Y, subunit A9 ) HSP 1 Score: 193.0 bits (489), Expect = 4.0e-49 Identity = 159/347 (45.82%), Postives = 192/347 (55.33%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25
Relationships
This mRNA is a part of the following gene feature(s):
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
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