Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTTTCGAGAGCATTCCACCAGTTTTTGGCGACTTTCACTTTCAACCCGATTCACCGCCTACGTGCCCTTTACGCCCAGTCATTCCGAAGAACACTTGCCCCCCCCGTCTTACCGCGGCTGCTGGCACGGAGTTAGCCGGGGCTTCTTCCTCGAGTCCTGTCATGATCGCGCACTCGACGAAAGAGCTTTACAAGCGGCATTGCCCTTCTTCACTCACGCGATATTGCTGGATCGGGCTTTCGCCCATTGTCCAAGATTCCCCACTGCTGCCCCCCGTGGGAGTCCGGGCCGTGTCTCAGTCCCAGTGTGGCTGA
mRNA sequence
ATGGGTTTCGAGAGCATTCCACCAGTTTTTGGCGACTTTCACTTTCAACCCGATTCACCGCCTACGTGCCCTTTACGCCCAGTCATTCCGAAGAACACTTGCCCCCCCCGTCTTACCGCGGCTGCTGGCACGGAGTTAGCCGGGGCTTCTTCCTCGAGTCCTGTCATGATCGCGCACTCGACGAAAGAGCTTTACAAGCGGCATTGCCCTTCTTCACTCACGCGATATTGCTGGATCGGGCTTTCGCCCATTGTCCAAGATTCCCCACTGCTGCCCCCCGTGGGAGTCCGGGCCGTGTCTCAGTCCCAGTGTGGCTGA
Coding sequence (CDS)
ATGGGTTTCGAGAGCATTCCACCAGTTTTTGGCGACTTTCACTTTCAACCCGATTCACCGCCTACGTGCCCTTTACGCCCAGTCATTCCGAAGAACACTTGCCCCCCCCGTCTTACCGCGGCTGCTGGCACGGAGTTAGCCGGGGCTTCTTCCTCGAGTCCTGTCATGATCGCGCACTCGACGAAAGAGCTTTACAAGCGGCATTGCCCTTCTTCACTCACGCGATATTGCTGGATCGGGCTTTCGCCCATTGTCCAAGATTCCCCACTGCTGCCCCCCGTGGGAGTCCGGGCCGTGTCTCAGTCCCAGTGTGGCTGA
Protein sequence
MGFESIPPVFGDFHFQPDSPPTCPLRPVIPKNTCPPRLTAAAGTELAGASSSSPVMIAHSTKELYKRHCPSSLTRYCWIGLSPIVQDSPLLPPVGVRAVSQSQCG
Homology
BLAST of Tan0015870 vs. NCBI nr
Match:
KAA0060780.1 (ORF40s [Cucumis melo var. makuwa])
HSP 1 Score: 206.5 bits (524), Expect = 1.2e-49
Identity = 98/100 (98.00%), Postives = 99/100 (99.00%), Query Frame = 0
Query: 6 IPPVFGDFHFQPDSPPTCPLRPVIPKNTCPPRLTAAAGTELAGASSSSPVMIAHSTKELY 65
IPPVFGD +FQPDSPPTCPLRPVIPKNTCPPRLTAAAGTELAGASSSSPVMIAHSTKELY
Sbjct: 67 IPPVFGDLNFQPDSPPTCPLRPVIPKNTCPPRLTAAAGTELAGASSSSPVMIAHSTKELY 126
Query: 66 KRHCPSSLTRYCWIGLSPIVQDSPLLPPVGVRAVSQSQCG 106
KRHCPSSLTRYCWIGLSPIVQDSPLLPPVGVRAVSQSQCG
Sbjct: 127 KRHCPSSLTRYCWIGLSPIVQDSPLLPPVGVRAVSQSQCG 166
BLAST of Tan0015870 vs. NCBI nr
Match:
GFA98036.1 (ribosomal protein S10 [Tanacetum cinerariifolium])
HSP 1 Score: 137.1 bits (344), Expect = 8.6e-29
Identity = 67/71 (94.37%), Postives = 68/71 (95.77%), Query Frame = 0
Query: 3 FESIPPVFGDFHFQPDSPPTCPLRPVIPKNTCPPRLTAAAGTELAGASSSSPVMIAHSTK 62
FESIPP+FGDFHFQ DSPPTCPLRPVIPKNTCPPRLTAAAGTELAGASSSS VMIAHSTK
Sbjct: 155 FESIPPLFGDFHFQLDSPPTCPLRPVIPKNTCPPRLTAAAGTELAGASSSSLVMIAHSTK 214
Query: 63 ELYKRHCPSSL 74
ELYKRHC SSL
Sbjct: 215 ELYKRHCHSSL 225
BLAST of Tan0015870 vs. NCBI nr
Match:
KAF5786086.1 (hypothetical protein HanXRQr2_Chr10g0436591 [Helianthus annuus])
HSP 1 Score: 136.0 bits (341), Expect = 1.9e-28
Identity = 66/71 (92.96%), Postives = 67/71 (94.37%), Query Frame = 0
Query: 35 PPRLTAAAGTELAGASSSSPVMIAHSTKELYKRHCPSSLTRYCWIGLSPIVQDSPLLPPV 94
PPRL AAAGTELAGASSSS VMIAHSTKELYKRHCPSSLTRYCWIGLSPIVQDSPLLPP
Sbjct: 79 PPRLIAAAGTELAGASSSSLVMIAHSTKELYKRHCPSSLTRYCWIGLSPIVQDSPLLPPA 138
Query: 95 GVRAVSQSQCG 106
GVR VS+SQCG
Sbjct: 139 GVRVVSKSQCG 149
BLAST of Tan0015870 vs. NCBI nr
Match:
PPR89027.1 (hypothetical protein GOBAR_AA31647 [Gossypium barbadense])
HSP 1 Score: 131.7 bits (330), Expect = 3.6e-27
Identity = 63/69 (91.30%), Postives = 64/69 (92.75%), Query Frame = 0
Query: 2 GFESIPPVFGDFHFQPDSPPTCPLRPVIPKNTCPPRLTAAAGTELAGASSSSPVMIAHST 61
G IPPVFGDFHFQPDSPPTCPLRPVIPKNTCPPRLTAAAGTELAGASSSSPVMIAHST
Sbjct: 65 GLPGIPPVFGDFHFQPDSPPTCPLRPVIPKNTCPPRLTAAAGTELAGASSSSPVMIAHST 124
Query: 62 KELYKRHCP 71
KELY+R P
Sbjct: 125 KELYERALP 133
BLAST of Tan0015870 vs. NCBI nr
Match:
PPE01242.1 (hypothetical protein GOBAR_DD01736 [Gossypium barbadense])
HSP 1 Score: 129.4 bits (324), Expect = 1.8e-26
Identity = 62/65 (95.38%), Postives = 63/65 (96.92%), Query Frame = 0
Query: 6 IPPVFGDFHFQPDSPPTCPLRPVIPKNTCPPRLTAAAGTELAGASSSSPVMIAHSTKELY 65
IPPVFGDFHFQPDSPPTCPLRPVIPKNTCPPRLTAAAGTELAGASSSSPVMIAHSTKELY
Sbjct: 84 IPPVFGDFHFQPDSPPTCPLRPVIPKNTCPPRLTAAAGTELAGASSSSPVMIAHSTKELY 143
Query: 66 KRHCP 71
+R P
Sbjct: 144 ERALP 148
BLAST of Tan0015870 vs. ExPASy TrEMBL
Match:
A0A5A7V0C9 (ORF40s OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold44334G00020 PE=4 SV=1)
HSP 1 Score: 206.5 bits (524), Expect = 5.6e-50
Identity = 98/100 (98.00%), Postives = 99/100 (99.00%), Query Frame = 0
Query: 6 IPPVFGDFHFQPDSPPTCPLRPVIPKNTCPPRLTAAAGTELAGASSSSPVMIAHSTKELY 65
IPPVFGD +FQPDSPPTCPLRPVIPKNTCPPRLTAAAGTELAGASSSSPVMIAHSTKELY
Sbjct: 67 IPPVFGDLNFQPDSPPTCPLRPVIPKNTCPPRLTAAAGTELAGASSSSPVMIAHSTKELY 126
Query: 66 KRHCPSSLTRYCWIGLSPIVQDSPLLPPVGVRAVSQSQCG 106
KRHCPSSLTRYCWIGLSPIVQDSPLLPPVGVRAVSQSQCG
Sbjct: 127 KRHCPSSLTRYCWIGLSPIVQDSPLLPPVGVRAVSQSQCG 166
BLAST of Tan0015870 vs. ExPASy TrEMBL
Match:
A0A0A9RWP6 (Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1)
HSP 1 Score: 147.1 bits (370), Expect = 4.0e-32
Identity = 71/75 (94.67%), Postives = 72/75 (96.00%), Query Frame = 0
Query: 31 KNTCPPRLTAAAGTELAGASSSSPVMIAHSTKELYKRHCPSSLTRYCWIGLSPIVQDSPL 90
+ PPRLTAAAGTELAGASSSSPVMIAHSTKELYKRHCPSSLTRYCWIGLSPIVQDSPL
Sbjct: 73 RTLAPPRLTAAAGTELAGASSSSPVMIAHSTKELYKRHCPSSLTRYCWIGLSPIVQDSPL 132
Query: 91 LPPVGVRAVSQSQCG 106
LPPVGVRAVSQSQCG
Sbjct: 133 LPPVGVRAVSQSQCG 147
BLAST of Tan0015870 vs. ExPASy TrEMBL
Match:
A0A2P5WD91 (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA31647 PE=4 SV=1)
HSP 1 Score: 131.7 bits (330), Expect = 1.8e-27
Identity = 63/69 (91.30%), Postives = 64/69 (92.75%), Query Frame = 0
Query: 2 GFESIPPVFGDFHFQPDSPPTCPLRPVIPKNTCPPRLTAAAGTELAGASSSSPVMIAHST 61
G IPPVFGDFHFQPDSPPTCPLRPVIPKNTCPPRLTAAAGTELAGASSSSPVMIAHST
Sbjct: 65 GLPGIPPVFGDFHFQPDSPPTCPLRPVIPKNTCPPRLTAAAGTELAGASSSSPVMIAHST 124
Query: 62 KELYKRHCP 71
KELY+R P
Sbjct: 125 KELYERALP 133
BLAST of Tan0015870 vs. ExPASy TrEMBL
Match:
A0A446X8H3 (Uncharacterized protein OS=Triticum turgidum subsp. durum OX=4567 GN=TRITD_7Av1G067250 PE=4 SV=1)
HSP 1 Score: 112.8 bits (281), Expect = 8.4e-22
Identity = 57/73 (78.08%), Postives = 59/73 (80.82%), Query Frame = 0
Query: 23 CPLRPVIPKNTCPPRLTAAAGTELAGASSSSPVMIAHSTKELYKRHCPSSLTRYCWIGLS 82
C L + T P LTAAAG ELA SSSSPVMIAHSTKELYK+HCPSSLTRYCWIGLS
Sbjct: 64 CALYAQSFRRTLAPHLTAAAGMELARDSSSSPVMIAHSTKELYKQHCPSSLTRYCWIGLS 123
Query: 83 PIVQDSPLLPPVG 96
PIVQDSPLLPP G
Sbjct: 124 PIVQDSPLLPPCG 136
BLAST of Tan0015870 vs. ExPASy TrEMBL
Match:
A0A2T7C7G7 (Uncharacterized protein OS=Panicum hallii var. hallii OX=1504633 GN=GQ55_9G274100 PE=4 SV=1)
HSP 1 Score: 94.0 bits (232), Expect = 4.1e-16
Identity = 42/42 (100.00%), Postives = 42/42 (100.00%), Query Frame = 0
Query: 56 MIAHSTKELYKRHCPSSLTRYCWIGLSPIVQDSPLLPPVGVR 98
MIAHSTKELYKRHCPSSLTRYCWIGLSPIVQDSPLLPPVGVR
Sbjct: 1 MIAHSTKELYKRHCPSSLTRYCWIGLSPIVQDSPLLPPVGVR 42
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| KAA0060780.1 | 1.2e-49 | 98.00 | ORF40s [Cucumis melo var. makuwa] | [more] |
| GFA98036.1 | 8.6e-29 | 94.37 | ribosomal protein S10 [Tanacetum cinerariifolium] | [more] |
| KAF5786086.1 | 1.9e-28 | 92.96 | hypothetical protein HanXRQr2_Chr10g0436591 [Helianthus annuus] | [more] |
| PPR89027.1 | 3.6e-27 | 91.30 | hypothetical protein GOBAR_AA31647 [Gossypium barbadense] | [more] |
| PPE01242.1 | 1.8e-26 | 95.38 | hypothetical protein GOBAR_DD01736 [Gossypium barbadense] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| A0A5A7V0C9 | 5.6e-50 | 98.00 | ORF40s OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold44334G00020 PE=4 ... | [more] |
| A0A0A9RWP6 | 4.0e-32 | 94.67 | Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1 | [more] |
| A0A2P5WD91 | 1.8e-27 | 91.30 | Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA31647 PE=4 SV... | [more] |
| A0A446X8H3 | 8.4e-22 | 78.08 | Uncharacterized protein OS=Triticum turgidum subsp. durum OX=4567 GN=TRITD_7Av1G... | [more] |
| A0A2T7C7G7 | 4.1e-16 | 100.00 | Uncharacterized protein OS=Panicum hallii var. hallii OX=1504633 GN=GQ55_9G27410... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
