Tan0015870.1 (mRNA) Snake gourd v1

Overview


Name	Tan0015870.1
Type	mRNA
Organism	Trichosanthes anguina (Snake gourd v1)
Description	ORF40s
Location	Contig00127: 140581 .. 140898 (-)
Sequence length	318
RNA-Seq Expression	Tan0015870.1
Synteny	Tan0015870.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTTTCGAGAGCATTCCACCAGTTTTTGGCGACTTTCACTTTCAACCCGATTCACCGCCTACGTGCCCTTTACGCCCAGTCATTCCGAAGAACACTTGCCCCCCCCGTCTTACCGCGGCTGCTGGCACGGAGTTAGCCGGGGCTTCTTCCTCGAGTCCTGTCATGATCGCGCACTCGACGAAAGAGCTTTACAAGCGGCATTGCCCTTCTTCACTCACGCGATATTGCTGGATCGGGCTTTCGCCCATTGTCCAAGATTCCCCACTGCTGCCCCCCGTGGGAGTCCGGGCCGTGTCTCAGTCCCAGTGTGGCTGA

mRNA sequence

ATGGGTTTCGAGAGCATTCCACCAGTTTTTGGCGACTTTCACTTTCAACCCGATTCACCGCCTACGTGCCCTTTACGCCCAGTCATTCCGAAGAACACTTGCCCCCCCCGTCTTACCGCGGCTGCTGGCACGGAGTTAGCCGGGGCTTCTTCCTCGAGTCCTGTCATGATCGCGCACTCGACGAAAGAGCTTTACAAGCGGCATTGCCCTTCTTCACTCACGCGATATTGCTGGATCGGGCTTTCGCCCATTGTCCAAGATTCCCCACTGCTGCCCCCCGTGGGAGTCCGGGCCGTGTCTCAGTCCCAGTGTGGCTGA

Coding sequence (CDS)

ATGGGTTTCGAGAGCATTCCACCAGTTTTTGGCGACTTTCACTTTCAACCCGATTCACCGCCTACGTGCCCTTTACGCCCAGTCATTCCGAAGAACACTTGCCCCCCCCGTCTTACCGCGGCTGCTGGCACGGAGTTAGCCGGGGCTTCTTCCTCGAGTCCTGTCATGATCGCGCACTCGACGAAAGAGCTTTACAAGCGGCATTGCCCTTCTTCACTCACGCGATATTGCTGGATCGGGCTTTCGCCCATTGTCCAAGATTCCCCACTGCTGCCCCCCGTGGGAGTCCGGGCCGTGTCTCAGTCCCAGTGTGGCTGA

Protein sequence

MGFESIPPVFGDFHFQPDSPPTCPLRPVIPKNTCPPRLTAAAGTELAGASSSSPVMIAHSTKELYKRHCPSSLTRYCWIGLSPIVQDSPLLPPVGVRAVSQSQCG

Homology

[Close]

BLAST of Tan0015870.1 vs. NCBI nr
Match: KAA0060780.1 (ORF40s [Cucumis melo var. makuwa])

HSP 1 Score: 206.5 bits (524), Expect = 1.2e-49
Identity = 98/100 (98.00%), Postives = 99/100 (99.00%), Query Frame = 0


Query: 6   IPPVFGDFHFQPDSPPTCPLRPVIPKNTCPPRLTAAAGTELAGASSSSPVMIAHSTKELY 65
           IPPVFGD +FQPDSPPTCPLRPVIPKNTCPPRLTAAAGTELAGASSSSPVMIAHSTKELY
Sbjct: 67  IPPVFGDLNFQPDSPPTCPLRPVIPKNTCPPRLTAAAGTELAGASSSSPVMIAHSTKELY 126

Query: 66  KRHCPSSLTRYCWIGLSPIVQDSPLLPPVGVRAVSQSQCG 106
           KRHCPSSLTRYCWIGLSPIVQDSPLLPPVGVRAVSQSQCG
Sbjct: 127 KRHCPSSLTRYCWIGLSPIVQDSPLLPPVGVRAVSQSQCG 166

[Close]

BLAST of Tan0015870.1 vs. NCBI nr
Match: GFA98036.1 (ribosomal protein S10 [Tanacetum cinerariifolium])

HSP 1 Score: 137.1 bits (344), Expect = 8.6e-29
Identity = 67/71 (94.37%), Postives = 68/71 (95.77%), Query Frame = 0


Query: 3   FESIPPVFGDFHFQPDSPPTCPLRPVIPKNTCPPRLTAAAGTELAGASSSSPVMIAHSTK 62
           FESIPP+FGDFHFQ DSPPTCPLRPVIPKNTCPPRLTAAAGTELAGASSSS VMIAHSTK
Sbjct: 155 FESIPPLFGDFHFQLDSPPTCPLRPVIPKNTCPPRLTAAAGTELAGASSSSLVMIAHSTK 214

Query: 63  ELYKRHCPSSL 74
           ELYKRHC SSL
Sbjct: 215 ELYKRHCHSSL 225

[Close]

BLAST of Tan0015870.1 vs. NCBI nr
Match: KAF5786086.1 (hypothetical protein HanXRQr2_Chr10g0436591 [Helianthus annuus])

HSP 1 Score: 136.0 bits (341), Expect = 1.9e-28
Identity = 66/71 (92.96%), Postives = 67/71 (94.37%), Query Frame = 0


Query: 35  PPRLTAAAGTELAGASSSSPVMIAHSTKELYKRHCPSSLTRYCWIGLSPIVQDSPLLPPV 94
           PPRL AAAGTELAGASSSS VMIAHSTKELYKRHCPSSLTRYCWIGLSPIVQDSPLLPP 
Sbjct: 79  PPRLIAAAGTELAGASSSSLVMIAHSTKELYKRHCPSSLTRYCWIGLSPIVQDSPLLPPA 138

Query: 95  GVRAVSQSQCG 106
           GVR VS+SQCG
Sbjct: 139 GVRVVSKSQCG 149

[Close]

BLAST of Tan0015870.1 vs. NCBI nr
Match: PPR89027.1 (hypothetical protein GOBAR_AA31647 [Gossypium barbadense])

HSP 1 Score: 131.7 bits (330), Expect = 3.6e-27
Identity = 63/69 (91.30%), Postives = 64/69 (92.75%), Query Frame = 0


Query: 2   GFESIPPVFGDFHFQPDSPPTCPLRPVIPKNTCPPRLTAAAGTELAGASSSSPVMIAHST 61
           G   IPPVFGDFHFQPDSPPTCPLRPVIPKNTCPPRLTAAAGTELAGASSSSPVMIAHST
Sbjct: 65  GLPGIPPVFGDFHFQPDSPPTCPLRPVIPKNTCPPRLTAAAGTELAGASSSSPVMIAHST 124

Query: 62  KELYKRHCP 71
           KELY+R  P
Sbjct: 125 KELYERALP 133

[Close]

BLAST of Tan0015870.1 vs. NCBI nr
Match: PPE01242.1 (hypothetical protein GOBAR_DD01736 [Gossypium barbadense])

HSP 1 Score: 129.4 bits (324), Expect = 1.8e-26
Identity = 62/65 (95.38%), Postives = 63/65 (96.92%), Query Frame = 0


Query: 6   IPPVFGDFHFQPDSPPTCPLRPVIPKNTCPPRLTAAAGTELAGASSSSPVMIAHSTKELY 65
           IPPVFGDFHFQPDSPPTCPLRPVIPKNTCPPRLTAAAGTELAGASSSSPVMIAHSTKELY
Sbjct: 84  IPPVFGDFHFQPDSPPTCPLRPVIPKNTCPPRLTAAAGTELAGASSSSPVMIAHSTKELY 143

Query: 66  KRHCP 71
           +R  P
Sbjct: 144 ERALP 148

[Close]

BLAST of Tan0015870.1 vs. ExPASy TrEMBL
Match: A0A5A7V0C9 (ORF40s OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold44334G00020 PE=4 SV=1)

HSP 1 Score: 206.5 bits (524), Expect = 5.6e-50
Identity = 98/100 (98.00%), Postives = 99/100 (99.00%), Query Frame = 0


Query: 6   IPPVFGDFHFQPDSPPTCPLRPVIPKNTCPPRLTAAAGTELAGASSSSPVMIAHSTKELY 65
           IPPVFGD +FQPDSPPTCPLRPVIPKNTCPPRLTAAAGTELAGASSSSPVMIAHSTKELY
Sbjct: 67  IPPVFGDLNFQPDSPPTCPLRPVIPKNTCPPRLTAAAGTELAGASSSSPVMIAHSTKELY 126

Query: 66  KRHCPSSLTRYCWIGLSPIVQDSPLLPPVGVRAVSQSQCG 106
           KRHCPSSLTRYCWIGLSPIVQDSPLLPPVGVRAVSQSQCG
Sbjct: 127 KRHCPSSLTRYCWIGLSPIVQDSPLLPPVGVRAVSQSQCG 166

[Close]

BLAST of Tan0015870.1 vs. ExPASy TrEMBL
Match: A0A0A9RWP6 (Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 4.0e-32
Identity = 71/75 (94.67%), Postives = 72/75 (96.00%), Query Frame = 0


Query: 31  KNTCPPRLTAAAGTELAGASSSSPVMIAHSTKELYKRHCPSSLTRYCWIGLSPIVQDSPL 90
           +   PPRLTAAAGTELAGASSSSPVMIAHSTKELYKRHCPSSLTRYCWIGLSPIVQDSPL
Sbjct: 73  RTLAPPRLTAAAGTELAGASSSSPVMIAHSTKELYKRHCPSSLTRYCWIGLSPIVQDSPL 132

Query: 91  LPPVGVRAVSQSQCG 106
           LPPVGVRAVSQSQCG
Sbjct: 133 LPPVGVRAVSQSQCG 147

[Close]

BLAST of Tan0015870.1 vs. ExPASy TrEMBL
Match: A0A2P5WD91 (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA31647 PE=4 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 1.8e-27
Identity = 63/69 (91.30%), Postives = 64/69 (92.75%), Query Frame = 0


Query: 2   GFESIPPVFGDFHFQPDSPPTCPLRPVIPKNTCPPRLTAAAGTELAGASSSSPVMIAHST 61
           G   IPPVFGDFHFQPDSPPTCPLRPVIPKNTCPPRLTAAAGTELAGASSSSPVMIAHST
Sbjct: 65  GLPGIPPVFGDFHFQPDSPPTCPLRPVIPKNTCPPRLTAAAGTELAGASSSSPVMIAHST 124

Query: 62  KELYKRHCP 71
           KELY+R  P
Sbjct: 125 KELYERALP 133

[Close]

BLAST of Tan0015870.1 vs. ExPASy TrEMBL
Match: A0A446X8H3 (Uncharacterized protein OS=Triticum turgidum subsp. durum OX=4567 GN=TRITD_7Av1G067250 PE=4 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 8.4e-22
Identity = 57/73 (78.08%), Postives = 59/73 (80.82%), Query Frame = 0


Query: 23  CPLRPVIPKNTCPPRLTAAAGTELAGASSSSPVMIAHSTKELYKRHCPSSLTRYCWIGLS 82
           C L     + T  P LTAAAG ELA  SSSSPVMIAHSTKELYK+HCPSSLTRYCWIGLS
Sbjct: 64  CALYAQSFRRTLAPHLTAAAGMELARDSSSSPVMIAHSTKELYKQHCPSSLTRYCWIGLS 123

Query: 83  PIVQDSPLLPPVG 96
           PIVQDSPLLPP G
Sbjct: 124 PIVQDSPLLPPCG 136

[Close]

BLAST of Tan0015870.1 vs. ExPASy TrEMBL
Match: A0A2T7C7G7 (Uncharacterized protein OS=Panicum hallii var. hallii OX=1504633 GN=GQ55_9G274100 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 4.1e-16
Identity = 42/42 (100.00%), Postives = 42/42 (100.00%), Query Frame = 0


Query: 56 MIAHSTKELYKRHCPSSLTRYCWIGLSPIVQDSPLLPPVGVR 98
          MIAHSTKELYKRHCPSSLTRYCWIGLSPIVQDSPLLPPVGVR
Sbjct: 1  MIAHSTKELYKRHCPSSLTRYCWIGLSPIVQDSPLLPPVGVR 42

The following BLAST results are available for this feature:

BLAST of Tan0015870.1 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0015870.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0060780.1	1.2e-49	98.00	ORF40s [Cucumis melo var. makuwa]	[more]
GFA98036.1	8.6e-29	94.37	ribosomal protein S10 [Tanacetum cinerariifolium]	[more]
KAF5786086.1	1.9e-28	92.96	hypothetical protein HanXRQr2_Chr10g0436591 [Helianthus annuus]	[more]
PPR89027.1	3.6e-27	91.30	hypothetical protein GOBAR_AA31647 [Gossypium barbadense]	[more]
PPE01242.1	1.8e-26	95.38	hypothetical protein GOBAR_DD01736 [Gossypium barbadense]	[more]

BLAST of Tan0015870.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7V0C9	5.6e-50	98.00	ORF40s OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold44334G00020 PE=4 ...	[more]
A0A0A9RWP6	4.0e-32	94.67	Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1	[more]
A0A2P5WD91	1.8e-27	91.30	Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA31647 PE=4 SV...	[more]
A0A446X8H3	8.4e-22	78.08	Uncharacterized protein OS=Triticum turgidum subsp. durum OX=4567 GN=TRITD_7Av1G...	[more]
A0A2T7C7G7	4.1e-16	100.00	Uncharacterized protein OS=Panicum hallii var. hallii OX=1504633 GN=GQ55_9G27410...	[more]

BLAST of Tan0015870.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Tan0015870	Tan0015870	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Tan0015870.1-exon	Tan0015870.1-exon-Contig00127:140581..140898	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Tan0015870.1-cds	Tan0015870.1-cds-Contig00127:140581..140898	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Tan0015870.1	Tan0015870.1-protein	polypeptide