Tan0015298 (gene) Snake gourd v1

Overview
NameTan0015298
Typegene
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionPentatricopeptide repeat-containing protein mitochondrial
LocationLG07: 8786012 .. 8787961 (+)
RNA-Seq ExpressionTan0015298
SyntenyTan0015298
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GATTAGGCAGATTAATTTGTGTTTGAATTGGTCTATGTTAATCTAATAATAGGAAATTAAAATTGAAATGAAGAAATTAAAAAGGTGTTTGACGACCCTTCTCCTTCGTCTTCGCTAATTTTGTCTCTGTGTTTTTTTACAGAAGATCCAAGGCAGGCAACAAGAAACCCGTCATAGCCATGGAGAATCAGAGCACCTGCTTGTCCTACGAGAAGCTCAACGGCATGGCCACCTGGGTCGGCACCAGCGTCGCCTCCGCCTTCTTCGCCTCTCTCGAGCGCTGTTCCTGCATCAATCTCTCAACCTCCGACGACCATGAAGATCCCGAAGAGGCTCACGATCGCCCTCTCATGTACTGCACCTCCACTTCTTCCTCCGTCATTCGCAGCTTCGAACCGCTTCCTCCGCCGGTCAACGACGTCGCTAATCTCCCCGTCTGACCGCCCGCTCTCCACGGATCTGAGGTCGTTTCCAAATTAGGTTTTCTTCTGATTTGTCGCGGGATCGGAATGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAATTTTGAAATCTTCTTTTTGTTCTATGCTTTCCTTTTTCTATCCCTTTCCCTTGCTCTGGGATTGAGGATTTTGGGTTGAATTGCTTCTCTTCGTTTGTTGATATCTTTCATTTCTGTGAATTACAACTGGAATTGATATAATAAAAATTAGCCAGAAACAAGTTGATTCTTGTTGGTTCTGATCCGTATTTGAAGATTCATCCTTCATAAACTTAGATCATCTAATCTGGTTGGTTCTGACTGATATACGTTTTCTTGAAATTGCATGATTTTCTGCCGTCCTTGTCCATGAATCCTGAAGCAAAGTTCTTAAACCAATTACAATTCTTGAAAGAACCCAAATTGATTTGGGATCAAGATGAATGAATATGGTGTTGGTAACCATTGGATGGTATCAAAAGTCACCAATGCCCTGAGTTTTGTCTTGGTGGTGATTTAATAATAATAGGAACAATAATTTTTCCATTTTATATTGAAATTGTGCAGATCTGAGCTTTGTTTCTGCCATTTTTTGTTTATAAAATTTGTTGAGAGATATCTGACCGACCTTTCTTCTACCTTTTTCCTGATCTTGATTGCTTTGTCATAATGCAGATAATGATATGGGATGTCTAGGAGTTTGATAACATATTCTGAAATGATTAGAGGCAGATGGAAAGACAACATTCGTACTGTTTTGTCAATTTCATTTCATTTCATGATCTCAGACACAAAACAACTCATTTAAATGTTATTTTATGTCAACTGTAAATGGTTGTCTGAATTGGAATATAATATTTGATGAGGAAAGAGAGAAAAGGGATCTTCTTCTTCTCCAAACTCCAAACTCCAAAGCAGAATGAGTTGGAGAAAAGTACTGCCACAAAAGGAAAACAAGTGGCCAAACAAAAATGGACAAGATTTCTCAATATTTAAACTACATGAGTAGAACTTTGTTCTTTAGAATTAAATTTAAAAACTAAAGAGAGAGAAGAATGGAAGATGTTACATGTTTCTTTGTCTGCTTCTTTGGGATTTGGAATTTAGATCTTGAAGCCATAGTTTTTCTTTTTGTCAGTACAGCTAATTGATTCCAATCATTTTTCTTCTGATGCAGAGCAGGAACATGGCCACACAGCTTGGTTACCAGAAAGCTTTAACAGAAATGGCAGAACAAAGCAGGGGAACAAGGAAACTGCAAATATTCACTATTTAAATACCACAATTTAATGTAGAAAGAATATTTAGATTATCTTCACACATAGACAAGTGAAGGGCAGCTCTTTTTCTTTATTCTTTTTAACGTTGTAATGTTGTAATCTTGGTTTCTTAATTGTCAAGTCCTGCAAAAGTAAATGTATAAAAATAATTTGAATATGATCAAATCCATTTCATTCACAATCCAATCATCAACATCAAATTCAAATA

mRNA sequence

GATTAGGCAGATTAATTTGTGTTTGAATTGGTCTATGTTAATCTAATAATAGGAAATTAAAATTGAAATGAAGAAATTAAAAAGGTGTTTGACGACCCTTCTCCTTCGTCTTCGCTAATTTTGTCTCTGTGTTTTTTTACAGAAGATCCAAGGCAGGCAACAAGAAACCCGTCATAGCCATGGAGAATCAGAGCACCTGCTTGTCCTACGAGAAGCTCAACGGCATGGCCACCTGGGTCGGCACCAGCGTCGCCTCCGCCTTCTTCGCCTCTCTCGAGCGCTGTTCCTGCATCAATCTCTCAACCTCCGACGACCATGAAGATCCCGAAGAGGCTCACGATCGCCCTCTCATGTACTGCACCTCCACTTCTTCCTCCGTCATTCGCAGCTTCGAACCGCTTCCTCCGCCGGTCAACGACGTCGCTAATCTCCCCGTCTGACCGCCCGCTCTCCACGGATCTGAGAGCAGGAACATGGCCACACAGCTTGGTTACCAGAAAGCTTTAACAGAAATGGCAGAACAAAGCAGGGGAACAAGGAAACTGCAAATATTCACTATTTAAATACCACAATTTAATGTAGAAAGAATATTTAGATTATCTTCACACATAGACAAGTGAAGGGCAGCTCTTTTTCTTTATTCTTTTTAACGTTGTAATGTTGTAATCTTGGTTTCTTAATTGTCAAGTCCTGCAAAAGTAAATGTATAAAAATAATTTGAATATGATCAAATCCATTTCATTCACAATCCAATCATCAACATCAAATTCAAATA

Coding sequence (CDS)

ATGGAGAATCAGAGCACCTGCTTGTCCTACGAGAAGCTCAACGGCATGGCCACCTGGGTCGGCACCAGCGTCGCCTCCGCCTTCTTCGCCTCTCTCGAGCGCTGTTCCTGCATCAATCTCTCAACCTCCGACGACCATGAAGATCCCGAAGAGGCTCACGATCGCCCTCTCATGTACTGCACCTCCACTTCTTCCTCCGTCATTCGCAGCTTCGAACCGCTTCCTCCGCCGGTCAACGACGTCGCTAATCTCCCCGTCTGA

Protein sequence

MENQSTCLSYEKLNGMATWVGTSVASAFFASLERCSCINLSTSDDHEDPEEAHDRPLMYCTSTSSSVIRSFEPLPPPVNDVANLPV
Homology
[Close]
BLAST of Tan0015298 vs. NCBI nr
Match: XP_011654597.1 (uncharacterized protein LOC101207351 isoform X1 [Cucumis sativus] >XP_011654598.1 uncharacterized protein LOC101207351 isoform X1 [Cucumis sativus] >XP_011654599.1 uncharacterized protein LOC101207351 isoform X1 [Cucumis sativus] >XP_011654600.1 uncharacterized protein LOC101207351 isoform X1 [Cucumis sativus] >XP_031742147.1 uncharacterized protein LOC101207351 isoform X1 [Cucumis sativus] >KAE8647797.1 hypothetical protein Csa_000040 [Cucumis sativus])

HSP 1 Score: 178.7 bits (452), Expect = 2.1e-41
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 0 

Query: 1   MENQSTCLSYEKLNGMATWVGTSVASAFFASLERCSCINLSTSDDHEDPEEAHDRPLMYC 60
           MENQSTCLSYEKLNGMATWVGTSVASAFFASLERCSCINLSTSDDHEDPEEAHDRPLMYC
Sbjct: 40  MENQSTCLSYEKLNGMATWVGTSVASAFFASLERCSCINLSTSDDHEDPEEAHDRPLMYC 99

Query: 61  TSTSSSVIRSFEPLPPPVNDVANLPV 87
           TSTSSSVIRSFEPLPPPVNDVANLPV
Sbjct: 100 TSTSSSVIRSFEPLPPPVNDVANLPV 125

[Close]
BLAST of Tan0015298 vs. NCBI nr
Match: XP_031742148.1 (uncharacterized protein LOC101207351 isoform X2 [Cucumis sativus])

HSP 1 Score: 178.7 bits (452), Expect = 2.1e-41
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 0 

Query: 1   MENQSTCLSYEKLNGMATWVGTSVASAFFASLERCSCINLSTSDDHEDPEEAHDRPLMYC 60
           MENQSTCLSYEKLNGMATWVGTSVASAFFASLERCSCINLSTSDDHEDPEEAHDRPLMYC
Sbjct: 39  MENQSTCLSYEKLNGMATWVGTSVASAFFASLERCSCINLSTSDDHEDPEEAHDRPLMYC 98

Query: 61  TSTSSSVIRSFEPLPPPVNDVANLPV 87
           TSTSSSVIRSFEPLPPPVNDVANLPV
Sbjct: 99  TSTSSSVIRSFEPLPPPVNDVANLPV 124

[Close]
BLAST of Tan0015298 vs. NCBI nr
Match: XP_008437637.1 (PREDICTED: uncharacterized protein LOC103482984 [Cucumis melo] >XP_008437638.1 PREDICTED: uncharacterized protein LOC103482984 [Cucumis melo] >XP_008437639.1 PREDICTED: uncharacterized protein LOC103482984 [Cucumis melo] >XP_008437640.1 PREDICTED: uncharacterized protein LOC103482984 [Cucumis melo])

HSP 1 Score: 174.1 bits (440), Expect = 5.2e-40
Identity = 86/87 (98.85%), Postives = 86/87 (98.85%), Query Frame = 0 

Query: 1   MENQSTCLSYEKLNGMATWVGTSVASAFFASLERCSCINLSTSDDHEDPEEAHDRPLMYC 60
           MENQSTCLSYEKLNGMATWVGTSVASAFFASLERCSCINLSTSDDHEDPEEAHDRPLMYC
Sbjct: 34  MENQSTCLSYEKLNGMATWVGTSVASAFFASLERCSCINLSTSDDHEDPEEAHDRPLMYC 93

Query: 61  TSTSSS-VIRSFEPLPPPVNDVANLPV 87
           TSTSSS VIRSFEPLPPPVNDVANLPV
Sbjct: 94  TSTSSSVVIRSFEPLPPPVNDVANLPV 120

[Close]
BLAST of Tan0015298 vs. NCBI nr
Match: XP_022922222.1 (uncharacterized protein LOC111430272 [Cucurbita moschata] >XP_022922223.1 uncharacterized protein LOC111430272 [Cucurbita moschata])

HSP 1 Score: 173.7 bits (439), Expect = 6.8e-40
Identity = 83/86 (96.51%), Postives = 85/86 (98.84%), Query Frame = 0 

Query: 1  MENQSTCLSYEKLNGMATWVGTSVASAFFASLERCSCINLSTSDDHEDPEEAHDRPLMYC 60
          MENQSTCLSYEKLNG+ATWVGTSVASAFFASLE CSCINLSTSDDHEDP+EAHDRPLMYC
Sbjct: 1  MENQSTCLSYEKLNGVATWVGTSVASAFFASLESCSCINLSTSDDHEDPDEAHDRPLMYC 60

Query: 61 TSTSSSVIRSFEPLPPPVNDVANLPV 87
          TSTSSSVIRSFEPLPPPVNDVANLPV
Sbjct: 61 TSTSSSVIRSFEPLPPPVNDVANLPV 86

[Close]
BLAST of Tan0015298 vs. NCBI nr
Match: KAG7016815.1 (hypothetical protein SDJN02_21926, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 173.3 bits (438), Expect = 8.9e-40
Identity = 82/86 (95.35%), Postives = 85/86 (98.84%), Query Frame = 0 

Query: 1   MENQSTCLSYEKLNGMATWVGTSVASAFFASLERCSCINLSTSDDHEDPEEAHDRPLMYC 60
           MENQSTCLSYEKLNG+ATWVGTSVASAFFASLE CSCINLSTSDDHEDP+EAHDRPLMYC
Sbjct: 15  MENQSTCLSYEKLNGVATWVGTSVASAFFASLESCSCINLSTSDDHEDPDEAHDRPLMYC 74

Query: 61  TSTSSSVIRSFEPLPPPVNDVANLPV 87
           TSTSSS+IRSFEPLPPPVNDVANLPV
Sbjct: 75  TSTSSSIIRSFEPLPPPVNDVANLPV 100

[Close]
BLAST of Tan0015298 vs. ExPASy TrEMBL
Match: A0A0A0KLU3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G139175 PE=4 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 1.0e-41
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 0 

Query: 1  MENQSTCLSYEKLNGMATWVGTSVASAFFASLERCSCINLSTSDDHEDPEEAHDRPLMYC 60
          MENQSTCLSYEKLNGMATWVGTSVASAFFASLERCSCINLSTSDDHEDPEEAHDRPLMYC
Sbjct: 1  MENQSTCLSYEKLNGMATWVGTSVASAFFASLERCSCINLSTSDDHEDPEEAHDRPLMYC 60

Query: 61 TSTSSSVIRSFEPLPPPVNDVANLPV 87
          TSTSSSVIRSFEPLPPPVNDVANLPV
Sbjct: 61 TSTSSSVIRSFEPLPPPVNDVANLPV 86

[Close]
BLAST of Tan0015298 vs. ExPASy TrEMBL
Match: A0A1S3AU63 (uncharacterized protein LOC103482984 OS=Cucumis melo OX=3656 GN=LOC103482984 PE=4 SV=1)

HSP 1 Score: 174.1 bits (440), Expect = 2.5e-40
Identity = 86/87 (98.85%), Postives = 86/87 (98.85%), Query Frame = 0 

Query: 1   MENQSTCLSYEKLNGMATWVGTSVASAFFASLERCSCINLSTSDDHEDPEEAHDRPLMYC 60
           MENQSTCLSYEKLNGMATWVGTSVASAFFASLERCSCINLSTSDDHEDPEEAHDRPLMYC
Sbjct: 34  MENQSTCLSYEKLNGMATWVGTSVASAFFASLERCSCINLSTSDDHEDPEEAHDRPLMYC 93

Query: 61  TSTSSS-VIRSFEPLPPPVNDVANLPV 87
           TSTSSS VIRSFEPLPPPVNDVANLPV
Sbjct: 94  TSTSSSVVIRSFEPLPPPVNDVANLPV 120

[Close]
BLAST of Tan0015298 vs. ExPASy TrEMBL
Match: A0A6J1E5Z9 (uncharacterized protein LOC111430272 OS=Cucurbita moschata OX=3662 GN=LOC111430272 PE=4 SV=1)

HSP 1 Score: 173.7 bits (439), Expect = 3.3e-40
Identity = 83/86 (96.51%), Postives = 85/86 (98.84%), Query Frame = 0 

Query: 1  MENQSTCLSYEKLNGMATWVGTSVASAFFASLERCSCINLSTSDDHEDPEEAHDRPLMYC 60
          MENQSTCLSYEKLNG+ATWVGTSVASAFFASLE CSCINLSTSDDHEDP+EAHDRPLMYC
Sbjct: 1  MENQSTCLSYEKLNGVATWVGTSVASAFFASLESCSCINLSTSDDHEDPDEAHDRPLMYC 60

Query: 61 TSTSSSVIRSFEPLPPPVNDVANLPV 87
          TSTSSSVIRSFEPLPPPVNDVANLPV
Sbjct: 61 TSTSSSVIRSFEPLPPPVNDVANLPV 86

[Close]
BLAST of Tan0015298 vs. ExPASy TrEMBL
Match: A0A6J1ID63 (uncharacterized protein LOC111471501 OS=Cucurbita maxima OX=3661 GN=LOC111471501 PE=4 SV=1)

HSP 1 Score: 172.2 bits (435), Expect = 9.6e-40
Identity = 81/86 (94.19%), Postives = 85/86 (98.84%), Query Frame = 0 

Query: 1  MENQSTCLSYEKLNGMATWVGTSVASAFFASLERCSCINLSTSDDHEDPEEAHDRPLMYC 60
          MENQSTCL+YEKLNG+ATWVGTSVASAFFASLE CSCINLSTSDDHEDP+EAHDRPLMYC
Sbjct: 1  MENQSTCLTYEKLNGVATWVGTSVASAFFASLESCSCINLSTSDDHEDPDEAHDRPLMYC 60

Query: 61 TSTSSSVIRSFEPLPPPVNDVANLPV 87
          TSTSSS+IRSFEPLPPPVNDVANLPV
Sbjct: 61 TSTSSSIIRSFEPLPPPVNDVANLPV 86

[Close]
BLAST of Tan0015298 vs. ExPASy TrEMBL
Match: A0A6J1C970 (uncharacterized protein LOC111009130 OS=Momordica charantia OX=3673 GN=LOC111009130 PE=4 SV=1)

HSP 1 Score: 172.2 bits (435), Expect = 9.6e-40
Identity = 85/87 (97.70%), Postives = 85/87 (97.70%), Query Frame = 0 

Query: 1  MENQSTCLSYEKLNGMATWVGTSVASAFFASLERCSCINLSTSDDHEDPEEAHDRPLMYC 60
          MENQSTCLSYEKLNGMATWVGTSVASAFFASLERCSCINLSTSDDHEDPEEAHDRPLMYC
Sbjct: 1  MENQSTCLSYEKLNGMATWVGTSVASAFFASLERCSCINLSTSDDHEDPEEAHDRPLMYC 60

Query: 61 TSTSSS-VIRSFEPLPPPVNDVANLPV 87
           STSSS VIRSFEPLPPPVNDVANLPV
Sbjct: 61 NSTSSSVVIRSFEPLPPPVNDVANLPV 87

[Close]
BLAST of Tan0015298 vs. TAIR 10
Match: AT4G10810.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G24026.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 73.9 bits (180), Expect = 6.9e-14
Identity = 37/55 (67.27%), Postives = 45/55 (81.82%), Query Frame = 0 

Query: 3  NQSTCLSYEKLNGMATWVGTSVASAFFASLERCSCINLSTSDDHEDPEEAHDRPL 58
          N ST  S EKL+  A+WV T+V SAFFASLERCSC+NLSTSDD ++ EE+H+RPL
Sbjct: 16 NLSTA-SLEKLDQAASWVSTTVISAFFASLERCSCVNLSTSDDDDEGEESHNRPL 69

[Close]
BLAST of Tan0015298 vs. TAIR 10
Match: AT4G24026.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G10810.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 67.0 bits (162), Expect = 8.4e-12
Identity = 32/57 (56.14%), Postives = 42/57 (73.68%), Query Frame = 0 

Query: 3  NQSTCLSYEKLNGMATWVGTSVASAFFASLERCSCINLSTS--DDHEDPEEAHDRPL 58
          N ST  S EK++  A+W+  +V SAFF SLERC+C+NLSTS  DD +D +E+H RPL
Sbjct: 10 NVSTTTSMEKIDHAASWISATVISAFFTSLERCACVNLSTSHDDDDDDDDESHHRPL 66

The following BLAST results are available for this feature:
BLAST of Tan0015298 vs.
Match NameE-valueIdentityDescription
BLAST of Tan0015298 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_011654597.12.1e-41100.00uncharacterized protein LOC101207351 isoform X1 [Cucumis sativus] >XP_011654598.... [more]
XP_031742148.12.1e-41100.00uncharacterized protein LOC101207351 isoform X2 [Cucumis sativus][more]
XP_008437637.15.2e-4098.85PREDICTED: uncharacterized protein LOC103482984 [Cucumis melo] >XP_008437638.1 P... [more]
XP_022922222.16.8e-4096.51uncharacterized protein LOC111430272 [Cucurbita moschata] >XP_022922223.1 unchar... [more]
KAG7016815.18.9e-4095.35hypothetical protein SDJN02_21926, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Tan0015298 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KLU31.0e-41100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G139175 PE=4 SV=1[more]
A0A1S3AU632.5e-4098.85uncharacterized protein LOC103482984 OS=Cucumis melo OX=3656 GN=LOC103482984 PE=... [more]
A0A6J1E5Z93.3e-4096.51uncharacterized protein LOC111430272 OS=Cucurbita moschata OX=3662 GN=LOC1114302... [more]
A0A6J1ID639.6e-4094.19uncharacterized protein LOC111471501 OS=Cucurbita maxima OX=3661 GN=LOC111471501... [more]
A0A6J1C9709.6e-4097.70uncharacterized protein LOC111009130 OS=Momordica charantia OX=3673 GN=LOC111009... [more]
BLAST of Tan0015298 vs. TAIR 10
Match NameE-valueIdentityDescription
AT4G10810.16.9e-1467.27unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT4G24026.18.4e-1256.14unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
InterPro
Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR34061PROTEIN, PUTATIVE-RELATEDcoord: 2..63
NoneNo IPR availablePANTHERPTHR34061:SF19OS10G0502100 PROTEINcoord: 2..63

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Tan0015298.1Tan0015298.1mRNA
Tan0015298.2Tan0015298.2mRNA