Spg034369 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg034369
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Pentatricopeptide repeat-containing protein
Location	scaffold12: 22656081 .. 22657064 (+)
RNA-Seq Expression	Spg034369
Synteny	Spg034369

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACTCTTCGCCCCCAGCTCCCCAAAGATTGTCTCCCCCCTCTTCTCCTCCAGTCCCCCCTTTGTGCTCCCGCCTTTGAGGCGTGAAAGGCGTAAACCTCAGTGAAAAGTGGAGTAAAAAAATTAAGGGAAAATTACACTTTTGGTCCCTGAAGTTTAGGTTTAGTGTCTATTTGGTCCCTGAAGTTTCAAAAGCAACACTTTAGTCCCTGAGGTTTGAAAAATAGTTCTAAATGGTCCTTAGGGTTAATTGACCGTTAGTTGACCTAATGGAAAGATGATGTGGTAGTTAATTAGTGATGAGACTTTGCTGAAGTGGCATTTTTAAATGAGTTGGCAAATAAATATTAATTTTATAATATTTATTTTAATTATGTGGCATTTTCGCTCTCTTCTCCTCTTCTTCTTTCTCTCCTTTTTCTTTTGGTCTTCCACCTCTTTGGCAAAGGTAGTCGCCGCATCCCTACTTATTCTCTACAACCCATTAACAAATCTGTCTAAATTCAATCATGATAATACTTCAACCCAGTGGGTCTTGCGACTGAAAGTCCTTTATTGAAAGAATTAAAAGAGAATTGTGGACGCTCTAGTGCTCGAGTACATGCTGTGATGATAAGACACTTTAGTAAATGTGGATGCCTCGGTGATGCTGTTGATCTTTTTAATGAAATGAAGAAACTTGGATGCAGCCCTAATGTGTATGTGCTTAATGCACTCATGTCAAGGATGGTAAGGGGCTGGAATGATCGACGAGGCTCATTCCTTGCTGAAGGTGAAGGAGCTTCAAGAATGAAATTTTGGCTATATTCTCCATGTTTGGTTCCTTTTTGTTAGGGTCCTCTTGAGGATTTATTGCTGTCAAAACCAACTAACGATTTATCTGGAGGATATTTATCTAGAGAACTCATGCACCAATTAGCAAGGATGAGCTCTCATGGCAGTATGGAGGATATGCTGAAGGAGAAGATGGAAGACGAAGAATAG

mRNA sequence

ATGACTCTTCGCCCCCAGCTCCCCAAAGATTGTCTCCCCCCTCTTCTCCTCCAGTCCCCCCTTTTGGGTCTTGCGACTGAAAGTCCTTTATTGAAAGAATTAAAAGAGAATTGTGGACGCTCTAGTGCTCGAGTACATGCTGTGATGATAAGACACTTTAGTAAATGTGGATGCCTCGGTGATGCTGTTGATCTTTTTAATGAAATGAAGAAACTTGGATGCAGCCCTAATGTGTATGTGCTTAATGCACTCATGTCAAGGATGGGTCCTCTTGAGGATTTATTGCTGTCAAAACCAACTAACGATTTATCTGGAGGATATTTATCTAGAGAACTCATGCACCAATTAGCAAGGATGAGCTCTCATGGCAGTATGGAGGATATGCTGAAGGAGAAGATGGAAGACGAAGAATAG

Coding sequence (CDS)

ATGACTCTTCGCCCCCAGCTCCCCAAAGATTGTCTCCCCCCTCTTCTCCTCCAGTCCCCCCTTTTGGGTCTTGCGACTGAAAGTCCTTTATTGAAAGAATTAAAAGAGAATTGTGGACGCTCTAGTGCTCGAGTACATGCTGTGATGATAAGACACTTTAGTAAATGTGGATGCCTCGGTGATGCTGTTGATCTTTTTAATGAAATGAAGAAACTTGGATGCAGCCCTAATGTGTATGTGCTTAATGCACTCATGTCAAGGATGGGTCCTCTTGAGGATTTATTGCTGTCAAAACCAACTAACGATTTATCTGGAGGATATTTATCTAGAGAACTCATGCACCAATTAGCAAGGATGAGCTCTCATGGCAGTATGGAGGATATGCTGAAGGAGAAGATGGAAGACGAAGAATAG

Protein sequence

MTLRPQLPKDCLPPLLLQSPLLGLATESPLLKELKENCGRSSARVHAVMIRHFSKCGCLGDAVDLFNEMKKLGCSPNVYVLNALMSRMGPLEDLLLSKPTNDLSGGYLSRELMHQLARMSSHGSMEDMLKEKMEDEE

Homology

[Close]

BLAST of Spg034369 vs. NCBI nr
Match: KAG7018336.1 (Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 101.3 bits (251), Expect = 6.9e-18
Identity = 48/59 (81.36%), Postives = 52/59 (88.14%), Query Frame = 0


Query: 30  LLKELKENCGRSSARVHAVMIRHFSKCGCLGDAVDLFNEMKKLGCSPNVYVLNALMSRM 89
           L +ELKENCGRSSARV+AVMI+HF KCG L DAVDLFNEMKKLGCSP+VY  NALMS M
Sbjct: 498 LFQELKENCGRSSARVYAVMIKHFGKCGRLSDAVDLFNEMKKLGCSPDVYTYNALMSGM 556

[Close]

BLAST of Spg034369 vs. NCBI nr
Match: XP_022955569.1 (pentatricopeptide repeat-containing protein At3g16010 [Cucurbita moschata])

HSP 1 Score: 101.3 bits (251), Expect = 6.9e-18
Identity = 48/59 (81.36%), Postives = 52/59 (88.14%), Query Frame = 0


Query: 30  LLKELKENCGRSSARVHAVMIRHFSKCGCLGDAVDLFNEMKKLGCSPNVYVLNALMSRM 89
           L +ELKENCGRSSARV+AVMI+HF KCG L DAVDLFNEMKKLGCSP+VY  NALMS M
Sbjct: 463 LFQELKENCGRSSARVYAVMIKHFGKCGRLSDAVDLFNEMKKLGCSPDVYTYNALMSGM 521

[Close]

BLAST of Spg034369 vs. NCBI nr
Match: KAG6581902.1 (Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 101.3 bits (251), Expect = 6.9e-18
Identity = 48/59 (81.36%), Postives = 52/59 (88.14%), Query Frame = 0


Query: 30  LLKELKENCGRSSARVHAVMIRHFSKCGCLGDAVDLFNEMKKLGCSPNVYVLNALMSRM 89
           L +ELKENCGRSSARV+AVMI+HF KCG L DAVDLFNEMKKLGCSP+VY  NALMS M
Sbjct: 463 LFQELKENCGRSSARVYAVMIKHFGKCGRLSDAVDLFNEMKKLGCSPDVYTYNALMSGM 521

[Close]

BLAST of Spg034369 vs. NCBI nr
Match: XP_038900614.1 (pentatricopeptide repeat-containing protein At3g16010 [Benincasa hispida])

HSP 1 Score: 101.3 bits (251), Expect = 6.9e-18
Identity = 48/59 (81.36%), Postives = 52/59 (88.14%), Query Frame = 0


Query: 30  LLKELKENCGRSSARVHAVMIRHFSKCGCLGDAVDLFNEMKKLGCSPNVYVLNALMSRM 89
           L +ELKENCGRSSARV+AVMI+HF KCG L DAVDLFNEMKKLGCSP+VY  NALMS M
Sbjct: 464 LFQELKENCGRSSARVYAVMIKHFGKCGRLSDAVDLFNEMKKLGCSPDVYTYNALMSGM 522

[Close]

BLAST of Spg034369 vs. NCBI nr
Match: XP_023528001.1 (pentatricopeptide repeat-containing protein At3g16010 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 101.3 bits (251), Expect = 6.9e-18
Identity = 48/59 (81.36%), Postives = 52/59 (88.14%), Query Frame = 0


Query: 30  LLKELKENCGRSSARVHAVMIRHFSKCGCLGDAVDLFNEMKKLGCSPNVYVLNALMSRM 89
           L +ELKENCGRSSARV+AVMI+HF KCG L DAVDLFNEMKKLGCSP+VY  NALMS M
Sbjct: 463 LFQELKENCGRSSARVYAVMIKHFGKCGRLSDAVDLFNEMKKLGCSPDVYTYNALMSGM 521

[Close]

BLAST of Spg034369 vs. ExPASy Swiss-Prot
Match: Q9LW84 (Pentatricopeptide repeat-containing protein At3g16010 OS=Arabidopsis thaliana OX=3702 GN=At3g16010 PE=2 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 5.6e-15
Identity = 40/59 (67.80%), Postives = 45/59 (76.27%), Query Frame = 0


Query: 30  LLKELKENCGRSSARVHAVMIRHFSKCGCLGDAVDLFNEMKKLGCSPNVYVLNALMSRM 89
           L KELKEN G  S+RV+AVMI+HF KCG L +AVDLFNEMK  G  P+VY  NALMS M
Sbjct: 466 LFKELKENFGNVSSRVYAVMIKHFGKCGKLSEAVDLFNEMKNQGSGPDVYAYNALMSGM 524

[Close]

BLAST of Spg034369 vs. ExPASy TrEMBL
Match: A0A6J1GWN2 (pentatricopeptide repeat-containing protein At3g16010 OS=Cucurbita moschata OX=3662 GN=LOC111457547 PE=4 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 3.3e-18
Identity = 48/59 (81.36%), Postives = 52/59 (88.14%), Query Frame = 0


Query: 30  LLKELKENCGRSSARVHAVMIRHFSKCGCLGDAVDLFNEMKKLGCSPNVYVLNALMSRM 89
           L +ELKENCGRSSARV+AVMI+HF KCG L DAVDLFNEMKKLGCSP+VY  NALMS M
Sbjct: 463 LFQELKENCGRSSARVYAVMIKHFGKCGRLSDAVDLFNEMKKLGCSPDVYTYNALMSGM 521

[Close]

BLAST of Spg034369 vs. ExPASy TrEMBL
Match: A0A7C9A1B6 (Uncharacterized protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 4.3e-18
Identity = 48/67 (71.64%), Postives = 54/67 (80.60%), Query Frame = 0


Query: 30  LLKELKENCGRSSARVHAVMIRHFSKCGCLGDAVDLFNEMKKLGCSPNVYVLNALMS--- 89
           L +EL+ENCG SSARV+AVMI+HF KCGCL DAVDLFNEMKKLGC P+VY  NALMS   
Sbjct: 457 LFQELRENCGTSSARVYAVMIKHFGKCGCLNDAVDLFNEMKKLGCKPDVYAYNALMSALV 516

Query: 90  RMGPLED 94
           R G + D
Sbjct: 517 RAGMIHD 523

[Close]

BLAST of Spg034369 vs. ExPASy TrEMBL
Match: A0A498HHU8 (Uncharacterized protein OS=Malus domestica OX=3750 GN=DVH24_031418 PE=4 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 4.3e-18
Identity = 48/59 (81.36%), Postives = 52/59 (88.14%), Query Frame = 0


Query: 30  LLKELKENCGRSSARVHAVMIRHFSKCGCLGDAVDLFNEMKKLGCSPNVYVLNALMSRM 89
           L +ELKENCGRSSARV+AVMI+HF KCG L DAVDLFNEMKKLGCSP+VY  NALMS M
Sbjct: 467 LFQELKENCGRSSARVYAVMIKHFGKCGRLDDAVDLFNEMKKLGCSPDVYAYNALMSGM 525

[Close]

BLAST of Spg034369 vs. ExPASy TrEMBL
Match: A0A7J7HYV2 (Uncharacterized protein OS=Camellia sinensis OX=4442 GN=HYC85_004313 PE=4 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 4.3e-18
Identity = 46/59 (77.97%), Postives = 52/59 (88.14%), Query Frame = 0


Query: 30  LLKELKENCGRSSARVHAVMIRHFSKCGCLGDAVDLFNEMKKLGCSPNVYVLNALMSRM 89
           L +ELKENCG SSARV+AVMI+HF KCGCL +A+DLFNEMKKLGCSP+VY  NALMS M
Sbjct: 424 LFQELKENCGSSSARVYAVMIKHFGKCGCLTEAIDLFNEMKKLGCSPDVYAYNALMSGM 482

[Close]

BLAST of Spg034369 vs. ExPASy TrEMBL
Match: A0A4V6RY92 (Uncharacterized protein OS=Camellia sinensis var. sinensis OX=542762 GN=TEA_017300 PE=4 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 4.3e-18
Identity = 46/59 (77.97%), Postives = 52/59 (88.14%), Query Frame = 0


Query: 30  LLKELKENCGRSSARVHAVMIRHFSKCGCLGDAVDLFNEMKKLGCSPNVYVLNALMSRM 89
           L +ELKENCG SSARV+AVMI+HF KCGCL +A+DLFNEMKKLGCSP+VY  NALMS M
Sbjct: 432 LFQELKENCGSSSARVYAVMIKHFGKCGCLTEAIDLFNEMKKLGCSPDVYAYNALMSGM 490

[Close]

BLAST of Spg034369 vs. TAIR 10
Match: AT3G16010.1 (Pentatricopeptide repeat (PPR-like) superfamily protein )

HSP 1 Score: 82.0 bits (201), Expect = 4.0e-16
Identity = 40/59 (67.80%), Postives = 45/59 (76.27%), Query Frame = 0


Query: 30  LLKELKENCGRSSARVHAVMIRHFSKCGCLGDAVDLFNEMKKLGCSPNVYVLNALMSRM 89
           L KELKEN G  S+RV+AVMI+HF KCG L +AVDLFNEMK  G  P+VY  NALMS M
Sbjct: 466 LFKELKENFGNVSSRVYAVMIKHFGKCGKLSEAVDLFNEMKNQGSGPDVYAYNALMSGM 524

[Close]

BLAST of Spg034369 vs. TAIR 10
Match: AT1G73710.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 41.6 bits (96), Expect = 6.0e-04
Identity = 19/57 (33.33%), Postives = 33/57 (57.89%), Query Frame = 0


Query: 30  LLKELKENCGRSSARVHAVMIRHFSKCGCLGDAVDLFNEMKKLGCSPNVYVLNALMS 87
           +L E+ ++  +   + +A MI  + + G L DAVDL+  M+K G  PN  V  +L++
Sbjct: 572 ILAEMLDSGCKPGCKTYAAMIASYVRLGLLSDAVDLYEAMEKTGVKPNEVVYGSLIN 628

[Close]

BLAST of Spg034369 vs. TAIR 10
Match: AT1G06710.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 41.6 bits (96), Expect = 6.0e-04
Identity = 19/56 (33.93%), Postives = 31/56 (55.36%), Query Frame = 0


Query: 30  LLKELKENCGRSSARVHAVMIRHFSKCGCLGDAVDLFNEMKKLGCSPNVYVLNALM 86
           L +E+K     +    + +M+  F K G +  A   FNEM+++GC+PNV    AL+
Sbjct: 505 LFEEMKRGGLVADVYTYTIMVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALI 560

The following BLAST results are available for this feature:

BLAST of Spg034369 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7018336.1	6.9e-18	81.36	Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma sub...	[more]
XP_022955569.1	6.9e-18	81.36	pentatricopeptide repeat-containing protein At3g16010 [Cucurbita moschata]	[more]
KAG6581902.1	6.9e-18	81.36	Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma sub...	[more]
XP_038900614.1	6.9e-18	81.36	pentatricopeptide repeat-containing protein At3g16010 [Benincasa hispida]	[more]
XP_023528001.1	6.9e-18	81.36	pentatricopeptide repeat-containing protein At3g16010 [Cucurbita pepo subsp. pep...	[more]

BLAST of Spg034369 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LW84	5.6e-15	67.80	Pentatricopeptide repeat-containing protein At3g16010 OS=Arabidopsis thaliana OX...	[more]

BLAST of Spg034369 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GWN2	3.3e-18	81.36	pentatricopeptide repeat-containing protein At3g16010 OS=Cucurbita moschata OX=3...	[more]
A0A7C9A1B6	4.3e-18	71.64	Uncharacterized protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1	[more]
A0A498HHU8	4.3e-18	81.36	Uncharacterized protein OS=Malus domestica OX=3750 GN=DVH24_031418 PE=4 SV=1	[more]
A0A7J7HYV2	4.3e-18	77.97	Uncharacterized protein OS=Camellia sinensis OX=4442 GN=HYC85_004313 PE=4 SV=1	[more]
A0A4V6RY92	4.3e-18	77.97	Uncharacterized protein OS=Camellia sinensis var. sinensis OX=542762 GN=TEA_0173...	[more]

BLAST of Spg034369 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G16010.1	4.0e-16	67.80	Pentatricopeptide repeat (PPR-like) superfamily protein	[more]
AT1G73710.1	6.0e-04	33.33	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT1G06710.1	6.0e-04	33.93	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 29..135 e-value: 1.8E-10 score: 42.4
IPR002885	Pentatricopeptide repeat	PFAM	PF13041	PPR_2	coord: 48..85 e-value: 6.1E-9 score: 36.0
IPR002885	Pentatricopeptide repeat	TIGRFAM	TIGR00756	TIGR00756	coord: 45..78 e-value: 7.2E-9 score: 33.3
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 42..76 score: 10.764054

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg034369.1	Spg034369.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding