Spg028666 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg028666
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRNA-dependent RNA polymerase
Locationscaffold7: 12066203 .. 12072326 (-)
RNA-Seq ExpressionSpg028666
SyntenySpg028666
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATTTGCCTTCATTCCTGCATTTTCGTTTCTACGTTTGCCCACTGTGGTATTTTGCAGTCTAGTACTACATTCTGTGTACTGGGTGTTTGCTCTTTGTATGAAAATTCTTCTTGGAATTGACCTAAACTTTCTTTACCATTGTTGATGGTTTCTTTACCATTGTTGATGGATTGTTGATTTGTTTTTGCTTTGGTGAGGCTAATCTTCTTTATCTTTGTTTTTCTTCATCTGGGTTCTTTTCTGATCGTTGTTTTCTTCACTTTTTTTTTCTCTCTGTTTTGTCTGTGGTTGTAACAATATATCCCCTTCTCGTCCCTTTGATGATTCTTACTGTTTCTGGGTTGTTTATGATCTACGGATGTTCCCTGTCTTCCATTTTTAGCTATCGCTTTGTGGGTGATGTTCTATTTTATTTAAATCTTGTAGTTGTTTTGGGGAAGATACAGAGTTTGGCTTTAATGTGTTCAAGAAGAACACATGAGGAAAACGCAAGTGATGAGAACTATTTATTTTTTAAGTTTTGTGCAATGGCTTTGAGAAACTCTTCCTTTTAGCTTCTTGAGTTTAGGCTATCTTTCTCTTGGATAGAAATCTGATTTTTTTTTATACATTTATTCTCAGTTTTTCTTCATTCTGTAATGATCATAGCACTTTTGAGCAATGGGATTGAGCTTAAATCTTTACTTGAGCATTACTTGATTCTTGGTCCTGTATAAACTACCGTTGTTATGCATTCATGTTCTTCCCCAAATATGTATAATGTGATAGAACTTTCTCTATGAATTGACATTGGTTGGACTTGGATCCTCTATTTCTTGATCGCATCACATGTATGCAACTTAATCAAGATGATAATGTTTTTGTATTGGGAATGAAGTAAGAAATTGATATCTATGAGGAAAGGGTTAAATATTTATCTAATCTCATTGGAATGTACGAGTACTTTCTCTTAGAGTGACCACTGACTTCCTTATTTTGAGGCTTAATGATATGCATTATAAATTTATAGTCGATTTGTTTGGTATGACAGAAGTTGCAGTCAATTCTCCTTGGATTGAATGGGTAAAACAATTCAGCTTTATGGATTCCCTCCTGGTGTATTACAAGAAGCGGTTAAAGCGTTTGTAGAGAGATTTACAGGTGAAGGAACTATTGATGCCATAAAGATCAAACGTTCGAAGGGAAGAGGAAGGCGAGTGTATGCTACAATCCAATTTACTGATGATGAAGGTGCCAAGTTAATTATATCATTGGCTAATAGACGCCTCTGCTATGATACTTCTTATCTGAAGGCAAGGGAGTGGAAACAGGATATTCTACCAGATCCACTAGTCTTTGAATACAACTTCAAAGGTCTAAGACTCCATCTTGGCTGTCAGATATCAAAGGAGAGGTTTTCTGTGTTATGGACGGAGTCGACTGTTTCTGTGGATTTCGGGTTTGAACGGCGTGAACTTAAGTTCTTCATATCCCATCCTCATGTTGACTACATGCTCGTACTGCGCTATGAGAACATTTGGCAGGTTGAGCTACACAAGCCACAAGGCCAATCTGTAGATTATCTTCTGATTCAGGTTCATCCATTAACTTTGAACAATATTATGTAATTAGTCTGCTGTTTTCTTTTCTCTGCATTATTGGCAAATATCATGAATGCATCCAAGCACATTTGACTGACAATTTTCACTTAACTAATGCCTGCATTATTCGCTGATTAGGGGATCGGATGATGAGCTCATGTACACGCTCATAGGCCTGATTTCTAACAGAGGACAGTGGAAGGACAGAAAAGGATAACTGGAAAATGGAATTTAGTAAACCACCAAATTCACAATTTCTTCCCAAGAAGCTGAGAGAAAATATATATACTGAACACTTTATGGGACAAAAGAATTAAGTCATTTGGAATATGAATGCTGAAAACTATTTAGAAGTAAGAGAATTTGTTGATATCTTCAATGTGAAGAAGAAAAGAGAAATGGCCACGATTTTTCTCAAAAGATGGTCAGAGCATTAATGGAACTCAGCTATAGATAGAATCTAGTGCTTCCAATGGATCAAAGAAGCTATATAATTTTATTTAGAAATTTTTTGGGACCTTTGATCCTTGCTAATTATTCACGTCAAATGGCTGTATTCAAGAGCACGTATAACAAGGCTAAATGGAGCAAATGGTTTACATTGTATATATTTGGCATGGCTAATAGAATTAAACTTTATTGGTAGTTCACACTTTCTCATTTTAGAAGATGATACCTAGAGATAAAATATGTGTTAACACATCTTCTTTATCCCGGCCTAATTTTGCTTTTTTTTTTTCCCATTTTTTATCCAATCTGATAGCTTCAAGACTGTTTGAAGGTTTTGCGTCTAATGAGACTTTGAGCCAATGTTAATGTTCTTTAGTCATTTCAGTCTGACAGAATATGCTTTCTTTGGAAGGAGCTAAAAGAGTTTCTCTAAAAGGTGTCTTATGGAAATGATACAATCAAGTTCTATGTACTTTCTAAAAAAAAAAATATATGCTGTCTTCATATTGATGTTGAAATAAGCAAGTTAAAGTTTTATAGCAAAGAATTTGAGCACAGATGTACTTGGAATAGATTTATATACATTTAATGTTGCATACAATTCTAACCATGACCTGTTTGGATTATCAGTTATTTGGTGCTCCGCGGATTTATGAGAGAGATACAAAGTCTTATAGACCTATTACTGAAGACCCTTTCTTTACCTTTTCTGAGGAAATTGACACCAAATGGTTTCGAGCAACCGATTTCACTCCATCATGCTGTATTGGACAATCTGCAGCTTTATGCTTGGAGATTCCTTACGGTCGCCAGCTCCCTAATTTTCACGATAATTTTGCTTACTACAAAGAAATCAAGGGCAAACTTACATTGGTCAGTGGTTCTACTTATTCCTCCAATGTTAACTTGGTACCTGTAGTTAGACCTCCTCTAAACATCAACTTACCATATGCAATTTTGTTCAAGATCAATTTGTTGGTACAACAGGGGTGTCTTCCAGGCCCAGCTCTTGATATTAGTTTCTATCAGATGGTAGATCCTCAGATACACAATATTGCCTTCATAGACCATGCATTAAAGAAACTTTACCACTTGAAAGAGTGTTGCTATAACCCTTCAAAATGGTTAGATGACGAGTACAGAAAGTACTTCAGATTAAAGAATCCCCCCCTGCCACCTATTTTTACCTTAAATGAAGGGTTAGTCTATGTACACAGGGTTCAAGTAACACCTTGTAAAGTGTACTTTTGTGGTCCGGAGGTTAATGTTTCAAATCGTGTATTACGCGGTTACCCTAAATACCTTGACAACTTTTTGCGTGTTTCATTTGTTGACGAGGAATTGGATAAGATGTATTCAACTGAATTGTCTCCACGAGAATCCTCTTCGTTGGAGGATGGAAAGACTAAAATATTTAAAAGGATCCTTTCAGTTCTAAAAGATGGCATTACCATTGGTGATAAGAAGTTCGAGTTTCTAGCCTATTCGTCTAGTCAATTACGGGAAAATGCTGTGTGGATGTTTGCTCCAAGAGATGGACTTACTGCAGCTAAAATAAGGAAAGGGATGGGAGATTTTCATAGTATACGAAATGTAGCCAAGTATGCTGCCAGACTAGGCCAATCCTTTGGTTCATCCACAGAAACTTTAAGTGTCAGCAGACGTGAAGTTGAAGTTATTCCTGATATCGAGGTTGAATCAGGTTCTGGTGTTAATTATGTCTTCTCTGATGGGATTGGGAAAATATCAGCTAGTTTTGCTAGAAAAGTAGCTCAAAAATGTGGCATCAGGCATACACCATCTGCTTTTCAGATTCGTTATGCTGGTTTTAAAGGTGTTATTTCTATTGATCCAACCTCATCAGTTAAATTATCACTTAGGAACAGCATGCTCAAGTATGAATCGGCAGACACAAAGCTCGATGTTTTATCTTGGAGTAAATATCATCCCTGTTTTCTAAATCGTCAGTTGATTACTCTTTTGTCTACACTTGGTGTTCAGGACCATGTCTTTGAGAGTAAACAAAAGGAATTGATAGAACAATTGGACACCATTTTTACAGATCCAATGAAGGCTCAGCAGGCCCTTGAGCTAATGTCTCCAGGAGAGAATACCAACATTCTGAAGGAAATGATCTTGTGTGGTTACAGACCTGATTCCGAGCCTTTCTTATCTATGATGTTGCATACATTCCGAGAATCGAAGTTGTTGGAATTGCGGAGAAAATCTAGGATCTTCATTCCAAATGGAAGAGCAATGATGGGATGTCTCGACGAAACTGGAAACTTGGATTATGGAGAGGTATTTGTGCAGTGTTCTGCACACCAGAAGCTACATAATGATCACATAATCTTTAGGAGAAGCAAATCAAACCGGCATTTCATTGTAACAGGAACAGTAGTAGTGGCGAAAAATCCATGTTTGCACCCAGGTGACGTGCGCGTCTTAACGGCCGTGGATGTACCATCTCTGCATCACATGGTAGATTGCGTGGTTTTTCCACAAAGAGGATCAAGGTAAATGATCTAGTTTTACATCAAAATTTACATCTCAATTCAAGTTCAAAGAAATATATTTATATATAGATCTTAGTCTTCGATAATTTTCGGTTAAAACTAATTCATATGAGCTAGTTGTTCTCCTTTGCAGCTTTAGATATATGTTTACGTTTGAACAAAACAGACTTTCTGTATTCTTGATCCTGTAGCTAAGCACCATCTAATGTTGTTTATGATTCAAGTCATATCTGCTGGTAATTTTGCTGATCTTAGAAACTTTCTTTCTGTGTAAGACCTCATCCAAATGAATGCTCGGGAAGCGATTTAGATGGCGATATATACTTTGTATGCTGGGACCCTGACTTGATTCCACCTCAACAAGTTGAACCAATGGATTATACCCCTGTACCTAGCAAATTACTAGATCATGATGTCACAATGGAGGTATTTTTTATAAGTGAATTTCGAACCATCGTTGTCAACAAACTCTTTTTGGAGGAAAAGTTGTTATTAAATGTTGTGTACTGTATATCTTGTGTTGCAGGAAGTTCAGGAGTATTTTGCAAATTATATGGTCAATGACAGTTTAGGAATCATTGCCAATGCTCATACAGCATTTGCAGATAGGGAGCCAGAGAAGGCAATGAGCAAGACTTGTATAAAGCTTGCAAAACTATTCTCAATTGCGGTCGACTTTCCGAAAACTGGCGTCCCTGCTTTAATATCTGCTGATCTAAGAGTACAAGCATATCCTGATTTCATGGATAAAGCTGACAAAGTGAGCTACAAGTCAGATAATGTACTGGGGAAACTGTTCAGAATGTTGGATAACGTTGGACCAAAGATTAAAATCAGGTCCTTGACCTTCACTCGGGAGGAGGCTCAGCAAGCTTATGATCCTGATATGGAAGTTGAAGGTTTCGAGGAGTACCTCGACGACGCCTTTTATCACAAGAACAACTATGACATGAGGTTGGGAAATTTGATGAACTATTATAAGATCAAAACTGAGGCAGAACTAATCAGCGGGGGTAGTTTGACAAAATCACTATCTTTTACGAAGAAAAACGAAGCGGAGTCGATCACCATGGCTGTGAAGTCCCTGCGAAAGGAGGCAAGGGGCTGGTTCAATGAGAATGCAGAGTTACATTTTGGACATGATAAGAATGTATATGCAAGAGCTTCAGCATGGTATTTTGTAACATATCATCACAGCTACTGGGGCTGGTATGATGATGGAAAGAAGCATGGCCATTTTCTTAGCTTTCCATGGTGTGTTCATGACAAACTCATCCGTATCAAGAAGCGAAAAATGAATGCTAGAGCTCGCTATCGATAAGCGCGTCATGAATTTTCATGAAGTTTGAATACAAATCTAGAAATTTAGCCAGCCTTTTTTGTCCATGTTTCAACAATTTTAAGACTCTTTGATGTTATCAGAAGTTATATGAATTGGAGAAATCCATTGCTTTGGTTTCTCCAAGAATGTACATGGCACTTGAGTTGAGAACAACAATCAACTTTGGTATAATAGTGGCAGAGATCAGGTTAATTTTTACTAATCACTTTTAGTCTTCTTGTCTATTTATCAACCCT

mRNA sequence

ATGGGTAAAACAATTCAGCTTTATGGATTCCCTCCTGGTGTATTACAAGAAGCGGTTAAAGCGTTTGTAGAGAGATTTACAGGTGAAGGAACTATTGATGCCATAAAGATCAAACGTTCGAAGGGAAGAGGAAGGCGAGTGTATGCTACAATCCAATTTACTGATGATGAAGGTGCCAAGTTAATTATATCATTGGCTAATAGACGCCTCTGCTATGATACTTCTTATCTGAAGGCAAGGGAGTGGAAACAGGATATTCTACCAGATCCACTAGTCTTTGAATACAACTTCAAAGGTCTAAGACTCCATCTTGGCTGTCAGATATCAAAGGAGAGGTTTTCTGTGTTATGGACGGAGTCGACTGTTTCTGTGGATTTCGGGTTTGAACGGCGTGAACTTAAGTTCTTCATATCCCATCCTCATGTTGACTACATGCTCGTACTGCGCTATGAGAACATTTGGCAGGTTGAGCTACACAAGCCACAAGGCCAATCTGTAGATTATCTTCTGATTCAGTTATTTGGTGCTCCGCGGATTTATGAGAGAGATACAAAGTCTTATAGACCTATTACTGAAGACCCTTTCTTTACCTTTTCTGAGGAAATTGACACCAAATGGTTTCGAGCAACCGATTTCACTCCATCATGCTGTATTGGACAATCTGCAGCTTTATGCTTGGAGATTCCTTACGGTCGCCAGCTCCCTAATTTTCACGATAATTTTGCTTACTACAAAGAAATCAAGGGCAAACTTACATTGGTCAGTGGTTCTACTTATTCCTCCAATGTTAACTTGGTACCTGTAGTTAGACCTCCTCTAAACATCAACTTACCATATGCAATTTTGTTCAAGATCAATTTGTTGGTACAACAGGGGTGTCTTCCAGGCCCAGCTCTTGATATTAGTTTCTATCAGATGGTAGATCCTCAGATACACAATATTGCCTTCATAGACCATGCATTAAAGAAACTTTACCACTTGAAAGAGTGTTGCTATAACCCTTCAAAATGGTTAGATGACGAGTACAGAAAGTACTTCAGATTAAAGAATCCCCCCCTGCCACCTATTTTTACCTTAAATGAAGGGTTAGTCTATGTACACAGGGTTCAAGTAACACCTTGTAAAGTGTACTTTTGTGGTCCGGAGGTTAATGTTTCAAATCGTGTATTACGCGGTTACCCTAAATACCTTGACAACTTTTTGCGTGTTTCATTTGTTGACGAGGAATTGGATAAGATGTATTCAACTGAATTGTCTCCACGAGAATCCTCTTCGTTGGAGGATGGAAAGACTAAAATATTTAAAAGGATCCTTTCAGTTCTAAAAGATGGCATTACCATTGGTGATAAGAAGTTCGAGTTTCTAGCCTATTCGTCTAGTCAATTACGGGAAAATGCTGTGTGGATGTTTGCTCCAAGAGATGGACTTACTGCAGCTAAAATAAGGAAAGGGATGGGAGATTTTCATAGTATACGAAATGTAGCCAAGTATGCTGCCAGACTAGGCCAATCCTTTGGTTCATCCACAGAAACTTTAAGTGTCAGCAGACGTGAAGTTGAAGTTATTCCTGATATCGAGGTTGAATCAGGTTCTGGTGTTAATTATGTCTTCTCTGATGGGATTGGGAAAATATCAGCTAGTTTTGCTAGAAAAGTAGCTCAAAAATGTGGCATCAGGCATACACCATCTGCTTTTCAGATTCGTTATGCTGGTTTTAAAGGTGTTATTTCTATTGATCCAACCTCATCAGTTAAATTATCACTTAGGAACAGCATGCTCAAGTATGAATCGGCAGACACAAAGCTCGATGTTTTATCTTGGAGTAAATATCATCCCTGTTTTCTAAATCGTCAGTTGATTACTCTTTTGTCTACACTTGGTGTTCAGGACCATGTCTTTGAGAGTAAACAAAAGGAATTGATAGAACAATTGGACACCATTTTTACAGATCCAATGAAGGCTCAGCAGGCCCTTGAGCTAATGTCTCCAGGAGAGAATACCAACATTCTGAAGGAAATGATCTTGTGTGGTTACAGACCTGATTCCGAGCCTTTCTTATCTATGATGTTGCATACATTCCGAGAATCGAAGTTGTTGGAATTGCGGAGAAAATCTAGGATCTTCATTCCAAATGGAAGAGCAATGATGGGATGTCTCGACGAAACTGGAAACTTGGATTATGGAGAGGTATTTGTGCAGTGTTCTGCACACCAGAAGCTACATAATGATCACATAATCTTTAGGAGAAGCAAATCAAACCGGCATTTCATTGTAACAGGAACAGTAGTAGTGGCGAAAAATCCATGTTTGCACCCAGGTGACGTGCGCGTCTTAACGGCCGTGGATGTACCATCTCTGCATCACATGGTAGATTGCGTGGTTTTTCCACAAAGAGGATCAAGACCTCATCCAAATGAATGCTCGGGAAGCGATTTAGATGGCGATATATACTTTGTATGCTGGGACCCTGACTTGATTCCACCTCAACAAGTTGAACCAATGGATTATACCCCTGTACCTAGCAAATTACTAGATCATGATGTCACAATGGAGGAAGTTCAGGAGTATTTTGCAAATTATATGGTCAATGACAGTTTAGGAATCATTGCCAATGCTCATACAGCATTTGCAGATAGGGAGCCAGAGAAGGCAATGAGCAAGACTTGTATAAAGCTTGCAAAACTATTCTCAATTGCGGTCGACTTTCCGAAAACTGGCGTCCCTGCTTTAATATCTGCTGATCTAAGAGTACAAGCATATCCTGATTTCATGGATAAAGCTGACAAAGTGAGCTACAAGTCAGATAATGTACTGGGGAAACTGTTCAGAATGTTGGATAACGTTGGACCAAAGATTAAAATCAGGTCCTTGACCTTCACTCGGGAGGAGGCTCAGCAAGCTTATGATCCTGATATGGAAGTTGAAGGTTTCGAGGAGTACCTCGACGACGCCTTTTATCACAAGAACAACTATGACATGAGGTTGGGAAATTTGATGAACTATTATAAGATCAAAACTGAGGCAGAACTAATCAGCGGGGGTAGTTTGACAAAATCACTATCTTTTACGAAGAAAAACGAAGCGGAGTCGATCACCATGGCTGTGAAGTCCCTGCGAAAGGAGGCAAGGGGCTGGTTCAATGAGAATGCAGAGTTACATTTTGGACATGATAAGAATGTATATGCAAGAGCTTCAGCATGGTATTTTGTAACATATCATCACAGCTACTGGGGCTGGTATGATGATGGAAAGAAGCATGGCCATTTTCTTAGCTTTCCATGGTGTGTTCATGACAAACTCATCCGTATCAAGAAGCGAAAAATGAATGCTAGAGCTCGCTATCGATAA

Coding sequence (CDS)

ATGGGTAAAACAATTCAGCTTTATGGATTCCCTCCTGGTGTATTACAAGAAGCGGTTAAAGCGTTTGTAGAGAGATTTACAGGTGAAGGAACTATTGATGCCATAAAGATCAAACGTTCGAAGGGAAGAGGAAGGCGAGTGTATGCTACAATCCAATTTACTGATGATGAAGGTGCCAAGTTAATTATATCATTGGCTAATAGACGCCTCTGCTATGATACTTCTTATCTGAAGGCAAGGGAGTGGAAACAGGATATTCTACCAGATCCACTAGTCTTTGAATACAACTTCAAAGGTCTAAGACTCCATCTTGGCTGTCAGATATCAAAGGAGAGGTTTTCTGTGTTATGGACGGAGTCGACTGTTTCTGTGGATTTCGGGTTTGAACGGCGTGAACTTAAGTTCTTCATATCCCATCCTCATGTTGACTACATGCTCGTACTGCGCTATGAGAACATTTGGCAGGTTGAGCTACACAAGCCACAAGGCCAATCTGTAGATTATCTTCTGATTCAGTTATTTGGTGCTCCGCGGATTTATGAGAGAGATACAAAGTCTTATAGACCTATTACTGAAGACCCTTTCTTTACCTTTTCTGAGGAAATTGACACCAAATGGTTTCGAGCAACCGATTTCACTCCATCATGCTGTATTGGACAATCTGCAGCTTTATGCTTGGAGATTCCTTACGGTCGCCAGCTCCCTAATTTTCACGATAATTTTGCTTACTACAAAGAAATCAAGGGCAAACTTACATTGGTCAGTGGTTCTACTTATTCCTCCAATGTTAACTTGGTACCTGTAGTTAGACCTCCTCTAAACATCAACTTACCATATGCAATTTTGTTCAAGATCAATTTGTTGGTACAACAGGGGTGTCTTCCAGGCCCAGCTCTTGATATTAGTTTCTATCAGATGGTAGATCCTCAGATACACAATATTGCCTTCATAGACCATGCATTAAAGAAACTTTACCACTTGAAAGAGTGTTGCTATAACCCTTCAAAATGGTTAGATGACGAGTACAGAAAGTACTTCAGATTAAAGAATCCCCCCCTGCCACCTATTTTTACCTTAAATGAAGGGTTAGTCTATGTACACAGGGTTCAAGTAACACCTTGTAAAGTGTACTTTTGTGGTCCGGAGGTTAATGTTTCAAATCGTGTATTACGCGGTTACCCTAAATACCTTGACAACTTTTTGCGTGTTTCATTTGTTGACGAGGAATTGGATAAGATGTATTCAACTGAATTGTCTCCACGAGAATCCTCTTCGTTGGAGGATGGAAAGACTAAAATATTTAAAAGGATCCTTTCAGTTCTAAAAGATGGCATTACCATTGGTGATAAGAAGTTCGAGTTTCTAGCCTATTCGTCTAGTCAATTACGGGAAAATGCTGTGTGGATGTTTGCTCCAAGAGATGGACTTACTGCAGCTAAAATAAGGAAAGGGATGGGAGATTTTCATAGTATACGAAATGTAGCCAAGTATGCTGCCAGACTAGGCCAATCCTTTGGTTCATCCACAGAAACTTTAAGTGTCAGCAGACGTGAAGTTGAAGTTATTCCTGATATCGAGGTTGAATCAGGTTCTGGTGTTAATTATGTCTTCTCTGATGGGATTGGGAAAATATCAGCTAGTTTTGCTAGAAAAGTAGCTCAAAAATGTGGCATCAGGCATACACCATCTGCTTTTCAGATTCGTTATGCTGGTTTTAAAGGTGTTATTTCTATTGATCCAACCTCATCAGTTAAATTATCACTTAGGAACAGCATGCTCAAGTATGAATCGGCAGACACAAAGCTCGATGTTTTATCTTGGAGTAAATATCATCCCTGTTTTCTAAATCGTCAGTTGATTACTCTTTTGTCTACACTTGGTGTTCAGGACCATGTCTTTGAGAGTAAACAAAAGGAATTGATAGAACAATTGGACACCATTTTTACAGATCCAATGAAGGCTCAGCAGGCCCTTGAGCTAATGTCTCCAGGAGAGAATACCAACATTCTGAAGGAAATGATCTTGTGTGGTTACAGACCTGATTCCGAGCCTTTCTTATCTATGATGTTGCATACATTCCGAGAATCGAAGTTGTTGGAATTGCGGAGAAAATCTAGGATCTTCATTCCAAATGGAAGAGCAATGATGGGATGTCTCGACGAAACTGGAAACTTGGATTATGGAGAGGTATTTGTGCAGTGTTCTGCACACCAGAAGCTACATAATGATCACATAATCTTTAGGAGAAGCAAATCAAACCGGCATTTCATTGTAACAGGAACAGTAGTAGTGGCGAAAAATCCATGTTTGCACCCAGGTGACGTGCGCGTCTTAACGGCCGTGGATGTACCATCTCTGCATCACATGGTAGATTGCGTGGTTTTTCCACAAAGAGGATCAAGACCTCATCCAAATGAATGCTCGGGAAGCGATTTAGATGGCGATATATACTTTGTATGCTGGGACCCTGACTTGATTCCACCTCAACAAGTTGAACCAATGGATTATACCCCTGTACCTAGCAAATTACTAGATCATGATGTCACAATGGAGGAAGTTCAGGAGTATTTTGCAAATTATATGGTCAATGACAGTTTAGGAATCATTGCCAATGCTCATACAGCATTTGCAGATAGGGAGCCAGAGAAGGCAATGAGCAAGACTTGTATAAAGCTTGCAAAACTATTCTCAATTGCGGTCGACTTTCCGAAAACTGGCGTCCCTGCTTTAATATCTGCTGATCTAAGAGTACAAGCATATCCTGATTTCATGGATAAAGCTGACAAAGTGAGCTACAAGTCAGATAATGTACTGGGGAAACTGTTCAGAATGTTGGATAACGTTGGACCAAAGATTAAAATCAGGTCCTTGACCTTCACTCGGGAGGAGGCTCAGCAAGCTTATGATCCTGATATGGAAGTTGAAGGTTTCGAGGAGTACCTCGACGACGCCTTTTATCACAAGAACAACTATGACATGAGGTTGGGAAATTTGATGAACTATTATAAGATCAAAACTGAGGCAGAACTAATCAGCGGGGGTAGTTTGACAAAATCACTATCTTTTACGAAGAAAAACGAAGCGGAGTCGATCACCATGGCTGTGAAGTCCCTGCGAAAGGAGGCAAGGGGCTGGTTCAATGAGAATGCAGAGTTACATTTTGGACATGATAAGAATGTATATGCAAGAGCTTCAGCATGGTATTTTGTAACATATCATCACAGCTACTGGGGCTGGTATGATGATGGAAAGAAGCATGGCCATTTTCTTAGCTTTCCATGGTGTGTTCATGACAAACTCATCCGTATCAAGAAGCGAAAAATGAATGCTAGAGCTCGCTATCGATAA

Protein sequence

MGKTIQLYGFPPGVLQEAVKAFVERFTGEGTIDAIKIKRSKGRGRRVYATIQFTDDEGAKLIISLANRRLCYDTSYLKAREWKQDILPDPLVFEYNFKGLRLHLGCQISKERFSVLWTESTVSVDFGFERRELKFFISHPHVDYMLVLRYENIWQVELHKPQGQSVDYLLIQLFGAPRIYERDTKSYRPITEDPFFTFSEEIDTKWFRATDFTPSCCIGQSAALCLEIPYGRQLPNFHDNFAYYKEIKGKLTLVSGSTYSSNVNLVPVVRPPLNINLPYAILFKINLLVQQGCLPGPALDISFYQMVDPQIHNIAFIDHALKKLYHLKECCYNPSKWLDDEYRKYFRLKNPPLPPIFTLNEGLVYVHRVQVTPCKVYFCGPEVNVSNRVLRGYPKYLDNFLRVSFVDEELDKMYSTELSPRESSSLEDGKTKIFKRILSVLKDGITIGDKKFEFLAYSSSQLRENAVWMFAPRDGLTAAKIRKGMGDFHSIRNVAKYAARLGQSFGSSTETLSVSRREVEVIPDIEVESGSGVNYVFSDGIGKISASFARKVAQKCGIRHTPSAFQIRYAGFKGVISIDPTSSVKLSLRNSMLKYESADTKLDVLSWSKYHPCFLNRQLITLLSTLGVQDHVFESKQKELIEQLDTIFTDPMKAQQALELMSPGENTNILKEMILCGYRPDSEPFLSMMLHTFRESKLLELRRKSRIFIPNGRAMMGCLDETGNLDYGEVFVQCSAHQKLHNDHIIFRRSKSNRHFIVTGTVVVAKNPCLHPGDVRVLTAVDVPSLHHMVDCVVFPQRGSRPHPNECSGSDLDGDIYFVCWDPDLIPPQQVEPMDYTPVPSKLLDHDVTMEEVQEYFANYMVNDSLGIIANAHTAFADREPEKAMSKTCIKLAKLFSIAVDFPKTGVPALISADLRVQAYPDFMDKADKVSYKSDNVLGKLFRMLDNVGPKIKIRSLTFTREEAQQAYDPDMEVEGFEEYLDDAFYHKNNYDMRLGNLMNYYKIKTEAELISGGSLTKSLSFTKKNEAESITMAVKSLRKEARGWFNENAELHFGHDKNVYARASAWYFVTYHHSYWGWYDDGKKHGHFLSFPWCVHDKLIRIKKRKMNARARYR
Homology
[Close]
BLAST of Spg028666 vs. NCBI nr
Match: XP_038877934.1 (RNA-dependent RNA polymerase 1-like isoform X1 [Benincasa hispida] >XP_038877936.1 RNA-dependent RNA polymerase 1-like isoform X1 [Benincasa hispida] >XP_038877937.1 RNA-dependent RNA polymerase 1-like isoform X1 [Benincasa hispida] >XP_038877938.1 RNA-dependent RNA polymerase 1-like isoform X1 [Benincasa hispida])

HSP 1 Score: 2032.7 bits (5265), Expect = 0.0e+00
Identity = 983/1115 (88.16%), Postives = 1042/1115 (93.45%), Query Frame = 0 

Query: 1    MGKTIQLYGFPPGVLQEAVKAFVERFTGEGTIDAIKIKRSKGRGRRVYATIQFTDDEGAK 60
            MGKTIQL+GFP GVLQE+VK FVERFTG+GTIDAI  KRSKGRGRR+YA IQFTD+EGAK
Sbjct: 1    MGKTIQLFGFPSGVLQESVKTFVERFTGKGTIDAINTKRSKGRGRRMYAIIQFTDEEGAK 60

Query: 61   LIISLANRRLCYDTSYLKAREWKQDILPDPLVFEYNFKGLRLHLGCQISKERFSVLWTES 120
             IIS A   L Y TSYLKAREWK DILPDP VFEYNFKGLRLHLGCQISKE FS+LWTES
Sbjct: 61   SIISKATEGLFYGTSYLKAREWKHDILPDPPVFEYNFKGLRLHLGCQISKESFSMLWTES 120

Query: 121  TVSVDFGFERRELKFFISHPHVDYMLVLRYENIWQVELHKPQGQSVDYLLIQLFGAPRIY 180
             VSVDFGFE+R+L FFIS+PHVDYMLVLRYENIWQVELHKPQGQSVDYLLIQLFGAPRIY
Sbjct: 121  NVSVDFGFEQRKLYFFISYPHVDYMLVLRYENIWQVELHKPQGQSVDYLLIQLFGAPRIY 180

Query: 181  ERDTKSYRPITEDPFFTFSEEIDTKWFRATDFTPSCCIGQSAALCLEIPYGRQLPNFHDN 240
            ERD  S   I  DPF  FS E+DT+WFRATDFTPSCCIGQSAA+CLEIPYGRQLPNFHD 
Sbjct: 181  ERDAISLGHIIGDPFLNFSMEVDTQWFRATDFTPSCCIGQSAAICLEIPYGRQLPNFHDK 240

Query: 241  FAYYKEIKGKLTLVSGSTYSSNVNLVPVVRPPLNINLPYAILFKINLLVQQGCLPGPALD 300
            FAY+KE  GK +LVSGSTYSSNVNLVPVVRPPL INLPYAILFKINLLVQQGCLPGPALD
Sbjct: 241  FAYFKEFNGKFSLVSGSTYSSNVNLVPVVRPPLTINLPYAILFKINLLVQQGCLPGPALD 300

Query: 301  ISFYQMVDPQIHNIAFIDHALKKLYHLKECCYNPSKWLDDEYRKYFRLKNPPLPPIFTLN 360
            I+FYQMVDP+I+NIAFIDHALKKL HLKECCYNPSKWLD+EYRKYF+ KNPP PPI +L+
Sbjct: 301  INFYQMVDPRIYNIAFIDHALKKLLHLKECCYNPSKWLDEEYRKYFKSKNPPQPPILSLS 360

Query: 361  EGLVYVHRVQVTPCKVYFCGPEVNVSNRVLRGYPKYLDNFLRVSFVDEELDKMYSTELSP 420
            EGLVYVHRVQVTPCKVYFCGPEVNVSNRVLR YP YLDNFLRVSFVDEELDKMYSTELSP
Sbjct: 361  EGLVYVHRVQVTPCKVYFCGPEVNVSNRVLRRYPDYLDNFLRVSFVDEELDKMYSTELSP 420

Query: 421  RESSSLEDGKTKIFKRILSVLKDGITIGDKKFEFLAYSSSQLRENAVWMFAPRDGLTAAK 480
            R SSSLEDGKTKIFKRILSVL+DGITIGDKKFEFLAYSSSQLRENA WMFAPRDGLTAA+
Sbjct: 421  RASSSLEDGKTKIFKRILSVLRDGITIGDKKFEFLAYSSSQLRENAAWMFAPRDGLTAAR 480

Query: 481  IRKGMGDFHSIRNVAKYAARLGQSFGSSTETLSVSRREVEVIPDIEVESGSGVNYVFSDG 540
            IR+ MGDFH IRNVAKYAARLGQSFGSSTETLSVSRREV +IPDIEVESG GVNYVFSDG
Sbjct: 481  IRRWMGDFHCIRNVAKYAARLGQSFGSSTETLSVSRREVNLIPDIEVESGGGVNYVFSDG 540

Query: 541  IGKISASFARKVAQKCGIRHTPSAFQIRYAGFKGVISIDPTSSVKLSLRNSMLKYESADT 600
            IGKIS SFA+KVA+KCGIRH PSAFQIRYAGFKGVIS+DPTSSVKLSLRNSMLKYES DT
Sbjct: 541  IGKISVSFAKKVAKKCGIRHMPSAFQIRYAGFKGVISVDPTSSVKLSLRNSMLKYESTDT 600

Query: 601  KLDVLSWSKYHPCFLNRQLITLLSTLGVQDHVFESKQKELIEQLDTIFTDPMKAQQALEL 660
            KLDVLSWSKYHPCFLNRQLITLLSTLGVQDHVFESKQ+ELI++LDTIF+DPMKAQ+ALEL
Sbjct: 601  KLDVLSWSKYHPCFLNRQLITLLSTLGVQDHVFESKQRELIDELDTIFSDPMKAQRALEL 660

Query: 661  MSPGENTNILKEMILCGYRPDSEPFLSMMLHTFRESKLLELRRKSRIFIPNGRAMMGCLD 720
            MSPGENT ILKEM+LCGYRPDSEPFL MMLHTFRESKLLELRRKSRIFIPNGRAM+GCLD
Sbjct: 661  MSPGENTKILKEMMLCGYRPDSEPFLWMMLHTFRESKLLELRRKSRIFIPNGRAMLGCLD 720

Query: 721  ETGNLDYGEVFVQCSAHQKLHNDHIIFRRSKSNRHFIVTGTVVVAKNPCLHPGDVRVLTA 780
            ET NL+YGEVFVQCSAHQ+L +DHIIF+R KSNRHFIVTGTVVVAKNPCLHPGDVRVLTA
Sbjct: 721  ETRNLEYGEVFVQCSAHQQLRDDHIIFKRRKSNRHFIVTGTVVVAKNPCLHPGDVRVLTA 780

Query: 781  VDVPSLHHMVDCVVFPQRGSRPHPNECSGSDLDGDIYFVCWDPDLIPPQQVEPMDYTPVP 840
            VDVP+LHHMVDCVVFPQ+GSRPHPNECSGSDLDGDIYFVCWDPDLIPP QVEPMDYTPVP
Sbjct: 781  VDVPALHHMVDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWDPDLIPPLQVEPMDYTPVP 840

Query: 841  SKLLDHDVTMEEVQEYFANYMVNDSLGIIANAHTAFADREPEKAMSKTCIKLAKLFSIAV 900
            SKLLDHDVTMEEVQEYFANYMVNDSLGIIANAHTAFAD+EPEKAMS  CI+LAKLFSIAV
Sbjct: 841  SKLLDHDVTMEEVQEYFANYMVNDSLGIIANAHTAFADKEPEKAMSNPCIELAKLFSIAV 900

Query: 901  DFPKTGVPALISADLRVQAYPDFMDKADKVSYKSDNVLGKLFRMLDNVGPKIK-IRSLTF 960
            DFPKTG+PALI A+LRVQ YPDFMDKADKV+Y+S NVLGKLFRMLDN+GP IK IRS  +
Sbjct: 901  DFPKTGIPALIPANLRVQEYPDFMDKADKVTYESKNVLGKLFRMLDNIGPNIKNIRSFAY 960

Query: 961  TREEAQQAYDPDMEVEGFEEYLDDAFYHKNNYDMRLGNLMNYYKIKTEAELISGGSLTKS 1020
            T + A++AYDPDMEVEGFEEYLDDA YHKNNYDMRLGNLM+YYKIKTEAELISGGSLT S
Sbjct: 961  TPDVAREAYDPDMEVEGFEEYLDDAIYHKNNYDMRLGNLMHYYKIKTEAELISGGSLTSS 1020

Query: 1021 LSFTKKNEAESITMAVKSLRKEARGWFNENAELHFGHDKNVYARASAWYFVTYHHSYWGW 1080
            LSFTKKNEAESITMAVKSLRKEARGWFNENA+LH+GHD NVYARASAWYFVTYHH+YWGW
Sbjct: 1021 LSFTKKNEAESITMAVKSLRKEARGWFNENADLHYGHDTNVYARASAWYFVTYHHTYWGW 1080

Query: 1081 YDDGKKHGHFLSFPWCVHDKLIRIKKRKMNARARY 1115
             D  K HGHFLSFPWC++DKLIRIK RK N+RARY
Sbjct: 1081 SDGRKNHGHFLSFPWCIYDKLIRIKNRKTNSRARY 1115

[Close]
BLAST of Spg028666 vs. NCBI nr
Match: XP_022943176.1 (RNA-dependent RNA polymerase 1-like [Cucurbita moschata])

HSP 1 Score: 2018.8 bits (5229), Expect = 0.0e+00
Identity = 980/1115 (87.89%), Postives = 1042/1115 (93.45%), Query Frame = 0 

Query: 1    MGKTIQLYGFPPGVLQEAVKAFVERFTGEGTIDAIKIKRSKGRGRRVYATIQFTDDEGAK 60
            MGKTIQLYGFP GVLQE+VKAFVERFTGEG+IDAI +KRS+GRG+R+YA IQF DD GAK
Sbjct: 1    MGKTIQLYGFPSGVLQESVKAFVERFTGEGSIDAINVKRSRGRGKRLYAIIQFIDDVGAK 60

Query: 61   LIISLANRRLCYDTSYLKAREWKQDILPDPLVFEYNFKGLRLHLGCQISKERFSVLWTES 120
            LIISLAN  L Y TSYLKAREWKQDIL DPLVFEYNFKGL LHLGCQIS+E F VLW ES
Sbjct: 61   LIISLANASLRYGTSYLKAREWKQDILQDPLVFEYNFKGLELHLGCQISREEFFVLWRES 120

Query: 121  TVSVDFGFERRELKFFISHPHVDYMLVLRYENIWQVELHKPQGQSVDYLLIQLFGAPRIY 180
             VSV+F FERR+LKFFISHP VDYMLVLRYENIWQVELHKPQGQS+DYLLIQL GAPRIY
Sbjct: 121  NVSVNFEFERRDLKFFISHPRVDYMLVLRYENIWQVELHKPQGQSIDYLLIQLVGAPRIY 180

Query: 181  ERDTKSYRPITEDPFFTFSEEIDTKWFRATDFTPSCCIGQSAALCLEIPYGRQLPNFHDN 240
            ERDTK +  I+EDPF +FS+E+DTKWFRATDFTPSCCIGQS ALCLEIPYGR LPNFHD 
Sbjct: 181  ERDTKLFGHISEDPFLSFSKEMDTKWFRATDFTPSCCIGQSGALCLEIPYGRLLPNFHDK 240

Query: 241  FAYYKEIKGKLTLVSGSTYSSNVNLVPVVRPPLNINLPYAILFKINLLVQQGCLPGPALD 300
            FAY+ EIKGK TL SGSTYSSNVNLVPVVRPPL+I+LPYAILFKINLLVQQGCLPGP+LD
Sbjct: 241  FAYFNEIKGKFTLASGSTYSSNVNLVPVVRPPLSIHLPYAILFKINLLVQQGCLPGPSLD 300

Query: 301  ISFYQMVDPQIHNIAFIDHALKKLYHLKECCYNPSKWLDDEYRKYFRLKNPPLPPIFTLN 360
            ISFY+MVDPQIHNIAFID AL+KLY LKECCYNPSKWL +EYRKY +L NPP PP  +L+
Sbjct: 301  ISFYEMVDPQIHNIAFIDRALRKLYDLKECCYNPSKWLGEEYRKYSKLTNPPQPPNLSLD 360

Query: 361  EGLVYVHRVQVTPCKVYFCGPEVNVSNRVLRGYPKYLDNFLRVSFVDEELDKMYSTELSP 420
            EGLVYVHRVQVTPC+VYFCGPEVNVSNRVLR YP+YLDNFLRVSFVDEELDK+YSTELSP
Sbjct: 361  EGLVYVHRVQVTPCRVYFCGPEVNVSNRVLRRYPEYLDNFLRVSFVDEELDKLYSTELSP 420

Query: 421  RESSSLEDGKTKIFKRILSVLKDGITIGDKKFEFLAYSSSQLRENAVWMFAPRDGLTAAK 480
            RESSSLEDGKTKIFKRILSVLKDGITIGDKKFEFLAYSSSQLRENAVWMFAPRDG+TAAK
Sbjct: 421  RESSSLEDGKTKIFKRILSVLKDGITIGDKKFEFLAYSSSQLRENAVWMFAPRDGITAAK 480

Query: 481  IRKGMGDFHSIRNVAKYAARLGQSFGSSTETLSVSRREVEVIPDIEVESGSGVNYVFSDG 540
            IRK MGDFHSIRNVAKYAARLGQSFGSSTET SVSRREV+VIPDIEV+S +G+NYVFSDG
Sbjct: 481  IRKWMGDFHSIRNVAKYAARLGQSFGSSTETASVSRREVKVIPDIEVKSDAGINYVFSDG 540

Query: 541  IGKISASFARKVAQKCGIRHTPSAFQIRYAGFKGVISIDPTSSVKLSLRNSMLKYESADT 600
            IGKISASFAR+VA+KC IRHTPSAFQIRYAGFKGVIS+DPTS VKLSLRNSMLKYES DT
Sbjct: 541  IGKISASFAREVARKCHIRHTPSAFQIRYAGFKGVISVDPTSFVKLSLRNSMLKYESTDT 600

Query: 601  KLDVLSWSKYHPCFLNRQLITLLSTLGVQDHVFESKQKELIEQLDTIFTDPMKAQQALEL 660
            KLDVLSWS+YHPC+LNRQLITLLSTLGVQD +FESKQKELI+QLDTIF DP+KAQQALEL
Sbjct: 601  KLDVLSWSRYHPCYLNRQLITLLSTLGVQDDIFESKQKELIDQLDTIFMDPLKAQQALEL 660

Query: 661  MSPGENTNILKEMILCGYRPDSEPFLSMMLHTFRESKLLELRRKSRIFIPNGRAMMGCLD 720
            MSPGENTNILKE+I CGYRPDSEPFL MMLHTFRESKLLELRRKSRIFIPNGRAMMGCLD
Sbjct: 661  MSPGENTNILKEIISCGYRPDSEPFLYMMLHTFRESKLLELRRKSRIFIPNGRAMMGCLD 720

Query: 721  ETGNLDYGEVFVQCSAHQKLHNDHIIFRRSKSNRHFIVTGTVVVAKNPCLHPGDVRVLTA 780
            ETGNL+YGEVFVQCSAHQ+LHNDHIIF+RSKSN+HFIVTGTVVVAKNPCLHPGDVRVLTA
Sbjct: 721  ETGNLEYGEVFVQCSAHQQLHNDHIIFKRSKSNQHFIVTGTVVVAKNPCLHPGDVRVLTA 780

Query: 781  VDVPSLHHMVDCVVFPQRGSRPHPNECSGSDLDGDIYFVCWDPDLIPPQQVEPMDYTPVP 840
            VDVPSLHHMVDC+VFPQ+G RPHPNECSGSDLDGDIYFVCWDPDLIPPQQVEPMDYTPVP
Sbjct: 781  VDVPSLHHMVDCLVFPQKGPRPHPNECSGSDLDGDIYFVCWDPDLIPPQQVEPMDYTPVP 840

Query: 841  SKLLDHDVTMEEVQEYFANYMVNDSLGIIANAHTAFADREPEKAMSKTCIKLAKLFSIAV 900
            S+LLDHDVTMEEVQEYFANYMVNDSLGIIANAHTAFAD  PEKAMS+ CIKLAKLFSIAV
Sbjct: 841  SRLLDHDVTMEEVQEYFANYMVNDSLGIIANAHTAFADSRPEKAMSEPCIKLAKLFSIAV 900

Query: 901  DFPKTGVPALISADLRVQAYPDFMDKADKVSYKSDNVLGKLFRMLDNVGPKIKIRSLTFT 960
            DFPKTGVPALISADLRVQ YPDFMDK DK SYKS NVLGKLFRMLD++ P+I I+S+ FT
Sbjct: 901  DFPKTGVPALISADLRVQVYPDFMDKPDKQSYKSHNVLGKLFRMLDDIEPRISIKSVKFT 960

Query: 961  REEAQQAYDPDMEVEGFEEYLDDAFYHKNNYDMRLGNLMNYYKIKTEAELISGGSLTKSL 1020
            RE A+QAYDPDMEV+GFEEYLDDA YHKNNYDMRLGNLM YYKIKTEAELISG SLTKS 
Sbjct: 961  REIARQAYDPDMEVKGFEEYLDDALYHKNNYDMRLGNLMKYYKIKTEAELISGVSLTKSS 1020

Query: 1021 SFTKKNEAESITMAVKSLRKEARGWFNENAELHFGHDKNVYARASAWYFVTYHHSYWGWY 1080
            SFTKKNEAESI MAVKSLRKEARGWFNENA LHFGHD N YARASAWYFVTYH+SYWGWY
Sbjct: 1021 SFTKKNEAESIIMAVKSLRKEARGWFNENAGLHFGHDNNAYARASAWYFVTYHYSYWGWY 1080

Query: 1081 DDGKKHGHFLSFPWCVHDKLIRIKKRKMNARARYR 1116
             + K   HFLSFPWCV+DKLIRIKKRK+ ARAR+R
Sbjct: 1081 GE-KNESHFLSFPWCVYDKLIRIKKRKIGARARHR 1114

[Close]
BLAST of Spg028666 vs. NCBI nr
Match: XP_023539816.1 (RNA-dependent RNA polymerase 1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 2016.9 bits (5224), Expect = 0.0e+00
Identity = 980/1115 (87.89%), Postives = 1041/1115 (93.36%), Query Frame = 0 

Query: 1    MGKTIQLYGFPPGVLQEAVKAFVERFTGEGTIDAIKIKRSKGRGRRVYATIQFTDDEGAK 60
            MGKTIQLYGFP GVLQE+VKAFVERFTGEG+IDAI +KRS+GRG+R+YA IQF DD GAK
Sbjct: 1    MGKTIQLYGFPSGVLQESVKAFVERFTGEGSIDAINVKRSRGRGKRLYAIIQFIDDVGAK 60

Query: 61   LIISLANRRLCYDTSYLKAREWKQDILPDPLVFEYNFKGLRLHLGCQISKERFSVLWTES 120
            LIISLAN  L Y TSYLKAREWKQDIL DPLVFEYNFKGL LHLGCQIS+E F VLW ES
Sbjct: 61   LIISLANASLRYGTSYLKAREWKQDILQDPLVFEYNFKGLELHLGCQISREEFFVLWRES 120

Query: 121  TVSVDFGFERRELKFFISHPHVDYMLVLRYENIWQVELHKPQGQSVDYLLIQLFGAPRIY 180
             VSV+F FERR+LKFFISH H DYMLVLRYENIWQVELHKP GQS+DYLLIQL GAPRIY
Sbjct: 121  NVSVNFEFERRDLKFFISHSHADYMLVLRYENIWQVELHKPPGQSIDYLLIQLVGAPRIY 180

Query: 181  ERDTKSYRPITEDPFFTFSEEIDTKWFRATDFTPSCCIGQSAALCLEIPYGRQLPNFHDN 240
            ERDTK +  I+EDPF +FS+E+DT+WFRATDFTPSCCIGQS ALCLEIPYGR LPNFHD 
Sbjct: 181  ERDTKLFGHISEDPFLSFSKEMDTEWFRATDFTPSCCIGQSGALCLEIPYGRLLPNFHDK 240

Query: 241  FAYYKEIKGKLTLVSGSTYSSNVNLVPVVRPPLNINLPYAILFKINLLVQQGCLPGPALD 300
            FAY+KEIKGK TL SGSTYSSNVNLVPVVRPPL+I+LPYAILFKINLLVQQGCLPGPALD
Sbjct: 241  FAYFKEIKGKFTLASGSTYSSNVNLVPVVRPPLSIHLPYAILFKINLLVQQGCLPGPALD 300

Query: 301  ISFYQMVDPQIHNIAFIDHALKKLYHLKECCYNPSKWLDDEYRKYFRLKNPPLPPIFTLN 360
            ISFY+MVDPQIHNIAFID AL+KLY LKECCYNPSKWL +EYRKY +L NPP PP  +L+
Sbjct: 301  ISFYEMVDPQIHNIAFIDRALRKLYDLKECCYNPSKWLGEEYRKYSKLTNPPQPPNLSLD 360

Query: 361  EGLVYVHRVQVTPCKVYFCGPEVNVSNRVLRGYPKYLDNFLRVSFVDEELDKMYSTELSP 420
            EGLVYVHRVQVTPC+VYFCGPEVNVSNRVLR YP+YLDNFLRVSFVDEELDK+YSTELSP
Sbjct: 361  EGLVYVHRVQVTPCRVYFCGPEVNVSNRVLRRYPEYLDNFLRVSFVDEELDKLYSTELSP 420

Query: 421  RESSSLEDGKTKIFKRILSVLKDGITIGDKKFEFLAYSSSQLRENAVWMFAPRDGLTAAK 480
            RESSSLEDGKTKIFKRILSVLKDGITIGDKKFEFLAYSSSQLRENAVWMFAPRDG+TAAK
Sbjct: 421  RESSSLEDGKTKIFKRILSVLKDGITIGDKKFEFLAYSSSQLRENAVWMFAPRDGITAAK 480

Query: 481  IRKGMGDFHSIRNVAKYAARLGQSFGSSTETLSVSRREVEVIPDIEVESGSGVNYVFSDG 540
            IRK MGDFHSIRNVAKYAARLGQSFGSSTET SVSRREVEVIPDIEV+S +G+NYVFSDG
Sbjct: 481  IRKWMGDFHSIRNVAKYAARLGQSFGSSTETASVSRREVEVIPDIEVKSDAGINYVFSDG 540

Query: 541  IGKISASFARKVAQKCGIRHTPSAFQIRYAGFKGVISIDPTSSVKLSLRNSMLKYESADT 600
            IGKISASFAR+VA+KC IRHTPSAFQIRYAGFKGVIS+DPTS VKLSLRNSMLKYES DT
Sbjct: 541  IGKISASFAREVARKCRIRHTPSAFQIRYAGFKGVISVDPTSFVKLSLRNSMLKYESTDT 600

Query: 601  KLDVLSWSKYHPCFLNRQLITLLSTLGVQDHVFESKQKELIEQLDTIFTDPMKAQQALEL 660
            KLDVLSWS+YHPC+LNRQLITLLSTLGVQD +FESKQKELI+QLDTIF DP+KAQQALEL
Sbjct: 601  KLDVLSWSRYHPCYLNRQLITLLSTLGVQDDIFESKQKELIDQLDTIFMDPLKAQQALEL 660

Query: 661  MSPGENTNILKEMILCGYRPDSEPFLSMMLHTFRESKLLELRRKSRIFIPNGRAMMGCLD 720
            MSPGENTNILKE+I CGYRPDSEPFLSMMLHTFRESKLLELRRKSRIFIPNGRAMMGCLD
Sbjct: 661  MSPGENTNILKEIISCGYRPDSEPFLSMMLHTFRESKLLELRRKSRIFIPNGRAMMGCLD 720

Query: 721  ETGNLDYGEVFVQCSAHQKLHNDHIIFRRSKSNRHFIVTGTVVVAKNPCLHPGDVRVLTA 780
            ETGNL+YGEVFVQCSAHQ+LHNDHIIF+RSKSN+HFIVTGTVVVAKNPCLHPGDVRVLTA
Sbjct: 721  ETGNLEYGEVFVQCSAHQQLHNDHIIFKRSKSNQHFIVTGTVVVAKNPCLHPGDVRVLTA 780

Query: 781  VDVPSLHHMVDCVVFPQRGSRPHPNECSGSDLDGDIYFVCWDPDLIPPQQVEPMDYTPVP 840
            VDVPSLHHMVDC+VFPQ+G RPHPNECSGSDLDGDIYFVCWDPDLIPPQQVEPMDYTPV 
Sbjct: 781  VDVPSLHHMVDCLVFPQKGPRPHPNECSGSDLDGDIYFVCWDPDLIPPQQVEPMDYTPVL 840

Query: 841  SKLLDHDVTMEEVQEYFANYMVNDSLGIIANAHTAFADREPEKAMSKTCIKLAKLFSIAV 900
            S+LLDHDVTMEEVQEYFANYMVNDSLGIIANAHTAFAD  PEKAMS+ CIKLAKLFSIAV
Sbjct: 841  SRLLDHDVTMEEVQEYFANYMVNDSLGIIANAHTAFADSRPEKAMSEPCIKLAKLFSIAV 900

Query: 901  DFPKTGVPALISADLRVQAYPDFMDKADKVSYKSDNVLGKLFRMLDNVGPKIKIRSLTFT 960
            DFPKTGVPALISADLRVQ YPDFMDK DK SYKS NVLGKLFRMLD++ P+I I+S+ FT
Sbjct: 901  DFPKTGVPALISADLRVQVYPDFMDKPDKQSYKSHNVLGKLFRMLDDIEPRISIKSVKFT 960

Query: 961  REEAQQAYDPDMEVEGFEEYLDDAFYHKNNYDMRLGNLMNYYKIKTEAELISGGSLTKSL 1020
            RE A+QAYDPDMEV+GFEEYLDDA YHKNNYDMRLGNLM YYKIKTEAELISG SLTKS 
Sbjct: 961  REIARQAYDPDMEVDGFEEYLDDALYHKNNYDMRLGNLMKYYKIKTEAELISGVSLTKSS 1020

Query: 1021 SFTKKNEAESITMAVKSLRKEARGWFNENAELHFGHDKNVYARASAWYFVTYHHSYWGWY 1080
            SFTKKNEAESI MAVKSLRKEARGWFNENA LHFGHD N YARASAWYFVTYH+SYWGWY
Sbjct: 1021 SFTKKNEAESIIMAVKSLRKEARGWFNENAGLHFGHDNNAYARASAWYFVTYHYSYWGWY 1080

Query: 1081 DDGKKHGHFLSFPWCVHDKLIRIKKRKMNARARYR 1116
             + K   HFLSFPWCV+DKLIRIKKRK+ ARAR+R
Sbjct: 1081 GE-KNESHFLSFPWCVYDKLIRIKKRKIGARARHR 1114

[Close]
BLAST of Spg028666 vs. NCBI nr
Match: KAG6599932.1 (RNA-dependent RNA polymerase 1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 2016.9 bits (5224), Expect = 0.0e+00
Identity = 980/1115 (87.89%), Postives = 1043/1115 (93.54%), Query Frame = 0 

Query: 1    MGKTIQLYGFPPGVLQEAVKAFVERFTGEGTIDAIKIKRSKGRGRRVYATIQFTDDEGAK 60
            MGKTIQLYGFP GVLQE+VKAFVERFTGEG+IDAI +KRS+GRG+R+YA IQF DD GAK
Sbjct: 1    MGKTIQLYGFPSGVLQESVKAFVERFTGEGSIDAINVKRSRGRGKRLYAIIQFIDDVGAK 60

Query: 61   LIISLANRRLCYDTSYLKAREWKQDILPDPLVFEYNFKGLRLHLGCQISKERFSVLWTES 120
            LIISLAN  L Y TSYLKAREWKQDIL DPLVFEYNFKGL LHLGCQIS+E F VLW ES
Sbjct: 61   LIISLANASLRYGTSYLKAREWKQDILQDPLVFEYNFKGLELHLGCQISREEFFVLWRES 120

Query: 121  TVSVDFGFERRELKFFISHPHVDYMLVLRYENIWQVELHKPQGQSVDYLLIQLFGAPRIY 180
             VSV+F FERR+LKFFISHP VDYMLVLRYENIWQVELHKPQGQS+DYLLIQL GAPRIY
Sbjct: 121  NVSVNFEFERRDLKFFISHPRVDYMLVLRYENIWQVELHKPQGQSIDYLLIQLVGAPRIY 180

Query: 181  ERDTKSYRPITEDPFFTFSEEIDTKWFRATDFTPSCCIGQSAALCLEIPYGRQLPNFHDN 240
            ERDTK +  I+EDPF +FS+E+DTKWFRATDFTPSCCIGQS ALCLEIPYGR LPNFHD 
Sbjct: 181  ERDTKLFGHISEDPFLSFSKEMDTKWFRATDFTPSCCIGQSGALCLEIPYGRLLPNFHDK 240

Query: 241  FAYYKEIKGKLTLVSGSTYSSNVNLVPVVRPPLNINLPYAILFKINLLVQQGCLPGPALD 300
            FAY+KEIKGK TL SGSTYSSNVNLVPVVRPPL+I+LPYAILFKINLLVQQGCLPGP+LD
Sbjct: 241  FAYFKEIKGKFTLASGSTYSSNVNLVPVVRPPLSIHLPYAILFKINLLVQQGCLPGPSLD 300

Query: 301  ISFYQMVDPQIHNIAFIDHALKKLYHLKECCYNPSKWLDDEYRKYFRLKNPPLPPIFTLN 360
            ISFY+MVDPQIHNIAFID AL+KLY LKECCYNPSKWL +EYRKY +L+NPP PP  +L+
Sbjct: 301  ISFYEMVDPQIHNIAFIDRALRKLYDLKECCYNPSKWLGEEYRKYSKLRNPPQPPNLSLD 360

Query: 361  EGLVYVHRVQVTPCKVYFCGPEVNVSNRVLRGYPKYLDNFLRVSFVDEELDKMYSTELSP 420
            EGLVYVHRVQVTPC+VYFCGPEVNVSNRVLR YP+YLDNFLRVSFVDEELDK+YSTELSP
Sbjct: 361  EGLVYVHRVQVTPCRVYFCGPEVNVSNRVLRRYPEYLDNFLRVSFVDEELDKLYSTELSP 420

Query: 421  RESSSLEDGKTKIFKRILSVLKDGITIGDKKFEFLAYSSSQLRENAVWMFAPRDGLTAAK 480
            RESSSLEDGKTKIFKRILSVLKDGITIGDKKFEFLAYSSSQLRENAVWMFAPR+G+TAAK
Sbjct: 421  RESSSLEDGKTKIFKRILSVLKDGITIGDKKFEFLAYSSSQLRENAVWMFAPRNGITAAK 480

Query: 481  IRKGMGDFHSIRNVAKYAARLGQSFGSSTETLSVSRREVEVIPDIEVESGSGVNYVFSDG 540
            IRK MGDFHSIRNVAKYAARLGQSFGSSTET SVSRREVEVIPDIEV+S +G+NYVFSDG
Sbjct: 481  IRKWMGDFHSIRNVAKYAARLGQSFGSSTETASVSRREVEVIPDIEVKSDAGINYVFSDG 540

Query: 541  IGKISASFARKVAQKCGIRHTPSAFQIRYAGFKGVISIDPTSSVKLSLRNSMLKYESADT 600
            IGKISASFAR+VA+KC IRHTPSAFQIRYAGFKGVIS+DPTS VKLSLRNSMLKYES DT
Sbjct: 541  IGKISASFAREVARKCRIRHTPSAFQIRYAGFKGVISVDPTSFVKLSLRNSMLKYESTDT 600

Query: 601  KLDVLSWSKYHPCFLNRQLITLLSTLGVQDHVFESKQKELIEQLDTIFTDPMKAQQALEL 660
            KLDVLSWS+YHPC+LNRQLITLLSTLGVQD +FESKQKELI+QLDTIF DP+KAQQALEL
Sbjct: 601  KLDVLSWSRYHPCYLNRQLITLLSTLGVQDDIFESKQKELIDQLDTIFMDPLKAQQALEL 660

Query: 661  MSPGENTNILKEMILCGYRPDSEPFLSMMLHTFRESKLLELRRKSRIFIPNGRAMMGCLD 720
            MSPGENTNILKE+I CGYRPDSEPFL MML+TFRESKLLELRRKSRIFIPNGRAMMGCLD
Sbjct: 661  MSPGENTNILKEIISCGYRPDSEPFLYMMLYTFRESKLLELRRKSRIFIPNGRAMMGCLD 720

Query: 721  ETGNLDYGEVFVQCSAHQKLHNDHIIFRRSKSNRHFIVTGTVVVAKNPCLHPGDVRVLTA 780
            ETGNL+YGEVFVQCSAHQ+LHNDHIIF+RSKSN+HFIVTGTVVVAKNPCLHPGDVRVLTA
Sbjct: 721  ETGNLEYGEVFVQCSAHQQLHNDHIIFKRSKSNQHFIVTGTVVVAKNPCLHPGDVRVLTA 780

Query: 781  VDVPSLHHMVDCVVFPQRGSRPHPNECSGSDLDGDIYFVCWDPDLIPPQQVEPMDYTPVP 840
            VDVPSLHHMVDC+VFPQ+G RPHPNECSGSDLDGDIYFVCWDPDLIPPQQVEPMDYTPV 
Sbjct: 781  VDVPSLHHMVDCLVFPQKGPRPHPNECSGSDLDGDIYFVCWDPDLIPPQQVEPMDYTPVL 840

Query: 841  SKLLDHDVTMEEVQEYFANYMVNDSLGIIANAHTAFADREPEKAMSKTCIKLAKLFSIAV 900
            S+LLDHDVTMEEVQEYFANYMVNDSLGIIANAHTAFAD  PEKAMS+ CIKLAKLFSIAV
Sbjct: 841  SRLLDHDVTMEEVQEYFANYMVNDSLGIIANAHTAFADSRPEKAMSEPCIKLAKLFSIAV 900

Query: 901  DFPKTGVPALISADLRVQAYPDFMDKADKVSYKSDNVLGKLFRMLDNVGPKIKIRSLTFT 960
            DFPKTGVPALISADLRVQ YPDFMDK DK SYKS NVLGKLFRMLD++ P+I I+S+ FT
Sbjct: 901  DFPKTGVPALISADLRVQVYPDFMDKPDKQSYKSHNVLGKLFRMLDDIEPRISIKSVKFT 960

Query: 961  REEAQQAYDPDMEVEGFEEYLDDAFYHKNNYDMRLGNLMNYYKIKTEAELISGGSLTKSL 1020
            RE A+QAYDPDMEVEGFEEYLDDA YHKNNYDMRLGNLM YYKIKTEAELISG SLTKS 
Sbjct: 961  REIARQAYDPDMEVEGFEEYLDDALYHKNNYDMRLGNLMKYYKIKTEAELISGVSLTKSS 1020

Query: 1021 SFTKKNEAESITMAVKSLRKEARGWFNENAELHFGHDKNVYARASAWYFVTYHHSYWGWY 1080
            SFTKKNEAESI MAVKSLRKEARGWFNENA LHFGHD N YARASAWYFVTYH+SYWGWY
Sbjct: 1021 SFTKKNEAESIIMAVKSLRKEARGWFNENAGLHFGHDNNAYARASAWYFVTYHYSYWGWY 1080

Query: 1081 DDGKKHGHFLSFPWCVHDKLIRIKKRKMNARARYR 1116
             + K   HFLSFPWCV+DKLIRIKKRK+ ARAR+R
Sbjct: 1081 GE-KNESHFLSFPWCVYDKLIRIKKRKIGARARHR 1114

[Close]
BLAST of Spg028666 vs. NCBI nr
Match: NP_001267682.1 (RNA-dependent RNA polymerase 1-like [Cucumis sativus] >XP_011654424.1 RNA-dependent RNA polymerase 1-like isoform X1 [Cucumis sativus] >ADU77016.1 RNA-dependent RNA polymerase 1b [Cucumis sativus] >KGN50762.1 hypothetical protein Csa_005874 [Cucumis sativus])

HSP 1 Score: 2007.6 bits (5200), Expect = 0.0e+00
Identity = 974/1115 (87.35%), Postives = 1035/1115 (92.83%), Query Frame = 0 

Query: 1    MGKTIQLYGFPPGVLQEAVKAFVERFTGEGTIDAIKIKRSKGRGRRVYATIQFTDDEGAK 60
            MGKTIQL+GFP GVLQE+VK FVE  TG GTIDAI  KRSKG GRRVYA IQFTD+EGAK
Sbjct: 1    MGKTIQLFGFPSGVLQESVKTFVEGITGTGTIDAINTKRSKGGGRRVYAIIQFTDEEGAK 60

Query: 61   LIISLANRRLCYDTSYLKAREWKQDILPDPLVFEYNFKGLRLHLGCQISKERFSVLWTES 120
             IIS A  RLCY TSYLKARE K DILPDPLVF+YNFK LRLHLGCQISKE FSVLWTES
Sbjct: 61   SIISKATERLCYGTSYLKAREMKHDILPDPLVFDYNFKALRLHLGCQISKESFSVLWTES 120

Query: 121  TVSVDFGFERRELKFFISHPHVDYMLVLRYENIWQVELHKPQGQSVDYLLIQLFGAPRIY 180
             VSVDFGFE R+L FFIS+P VDYMLVLRYENIWQVELHKP GQSVDYLLIQLFGAPRIY
Sbjct: 121  NVSVDFGFELRKLYFFISYPRVDYMLVLRYENIWQVELHKPHGQSVDYLLIQLFGAPRIY 180

Query: 181  ERDTKSYRPITEDPFFTFSEEIDTKWFRATDFTPSCCIGQSAALCLEIPYGRQLPNFHDN 240
            ERD +S+  ITEDPF  FS EIDT+WFRATDFTPSC IGQSAALCLEIPYGRQLPNFHD 
Sbjct: 181  ERDARSFGLITEDPFLNFSTEIDTQWFRATDFTPSCSIGQSAALCLEIPYGRQLPNFHDK 240

Query: 241  FAYYKEIKGKLTLVSGSTYSSNVNLVPVVRPPLNINLPYAILFKINLLVQQGCLPGPALD 300
            FAY+KEIKGK TLVSGSTYSSNVNLVPVV PP  INLPY ILFKINLLVQQGCLPGPALD
Sbjct: 241  FAYFKEIKGKFTLVSGSTYSSNVNLVPVVTPPRTINLPYTILFKINLLVQQGCLPGPALD 300

Query: 301  ISFYQMVDPQIHNIAFIDHALKKLYHLKECCYNPSKWLDDEYRKYFRLKNPPLPPIFTLN 360
            ISFYQMVD QI+N A IDHALKKL HLKECCYNPSKWLD+EYRKYF+LKNPP PPI TLN
Sbjct: 301  ISFYQMVDSQIYNTAVIDHALKKLLHLKECCYNPSKWLDEEYRKYFKLKNPPQPPILTLN 360

Query: 361  EGLVYVHRVQVTPCKVYFCGPEVNVSNRVLRGYPKYLDNFLRVSFVDEELDKMYSTELSP 420
            EGLVYVHRVQVTPCKVYFCGPEVN+SNRVLR YP Y+DNFLRVSFVDEEL KMYSTELSP
Sbjct: 361  EGLVYVHRVQVTPCKVYFCGPEVNISNRVLRRYPDYIDNFLRVSFVDEELGKMYSTELSP 420

Query: 421  RESSSLEDGKTKIFKRILSVLKDGITIGDKKFEFLAYSSSQLRENAVWMFAPRDGLTAAK 480
            R SSSLEDGKTKIFKRILSVL+DGITIGDKKFEFLAYSSSQLRENA WMFAP++ LTAAK
Sbjct: 421  RASSSLEDGKTKIFKRILSVLRDGITIGDKKFEFLAYSSSQLRENAAWMFAPKNELTAAK 480

Query: 481  IRKGMGDFHSIRNVAKYAARLGQSFGSSTETLSVSRREVEVIPDIEVESGSGVNYVFSDG 540
            IR+ MGDFH+IRNVAKYAARLGQSFGSSTETLSVSRREV+VIPDIEVESGSGVNYVFSDG
Sbjct: 481  IRQWMGDFHNIRNVAKYAARLGQSFGSSTETLSVSRREVKVIPDIEVESGSGVNYVFSDG 540

Query: 541  IGKISASFARKVAQKCGIRHTPSAFQIRYAGFKGVISIDPTSSVKLSLRNSMLKYESADT 600
            IGKI+ASFARKVA+KCGIRHTPSAFQIRYAGFKGVIS+DPTSSVKLSLRNSMLKYES DT
Sbjct: 541  IGKIAASFARKVAKKCGIRHTPSAFQIRYAGFKGVISVDPTSSVKLSLRNSMLKYESTDT 600

Query: 601  KLDVLSWSKYHPCFLNRQLITLLSTLGVQDHVFESKQKELIEQLDTIFTDPMKAQQALEL 660
            KLDVLSWSKYHPCFLNRQLITLLSTLGVQDHVFESKQ+ELI++LDTIF+DP+KAQQALEL
Sbjct: 601  KLDVLSWSKYHPCFLNRQLITLLSTLGVQDHVFESKQQELIDELDTIFSDPLKAQQALEL 660

Query: 661  MSPGENTNILKEMILCGYRPDSEPFLSMMLHTFRESKLLELRRKSRIFIPNGRAMMGCLD 720
            MSPGENT ILKEM+LCGY+PDSEPFL MMLHTFRESKL+ELR KSRIFIPNGRAMMGCLD
Sbjct: 661  MSPGENTKILKEMMLCGYKPDSEPFLRMMLHTFRESKLMELRMKSRIFIPNGRAMMGCLD 720

Query: 721  ETGNLDYGEVFVQCSAHQKLHNDHIIFRRSKSNRHFIVTGTVVVAKNPCLHPGDVRVLTA 780
            ET NL+YGEVFVQCSAHQ+LH+D +IF+R KSNRHFIVTGTVVVAKNPCLHPGDVRVLTA
Sbjct: 721  ETRNLEYGEVFVQCSAHQQLHDDRVIFKRIKSNRHFIVTGTVVVAKNPCLHPGDVRVLTA 780

Query: 781  VDVPSLHHMVDCVVFPQRGSRPHPNECSGSDLDGDIYFVCWDPDLIPPQQVEPMDYTPVP 840
            VDVPSLHHM+DCVVFPQ+GSRPHPNECSGSDLDGDIYFVCWDPDLIPPQQVEPMDYTPVP
Sbjct: 781  VDVPSLHHMIDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWDPDLIPPQQVEPMDYTPVP 840

Query: 841  SKLLDHDVTMEEVQEYFANYMVNDSLGIIANAHTAFADREPEKAMSKTCIKLAKLFSIAV 900
            S++LDHDVTMEEVQEYFANYMVNDSLGIIANAHTAFAD+EP+KAMS  CI+LAKLFSIAV
Sbjct: 841  SQVLDHDVTMEEVQEYFANYMVNDSLGIIANAHTAFADKEPKKAMSNPCIQLAKLFSIAV 900

Query: 901  DFPKTGVPALISADLRVQAYPDFMDKADKVSYKSDNVLGKLFRMLDNVGPKIK-IRSLTF 960
            DFPKTGVPALI A+LRV+ YPDFMDKADKV+Y+S+NVLGKLFRMLD++GP IK IRS  +
Sbjct: 901  DFPKTGVPALIPANLRVKEYPDFMDKADKVTYESENVLGKLFRMLDSIGPNIKNIRSFNY 960

Query: 961  TREEAQQAYDPDMEVEGFEEYLDDAFYHKNNYDMRLGNLMNYYKIKTEAELISGGSLTKS 1020
            T E A+Q YDPDMEVEGFEEYLDDA YHKNNYDMRLGNLM+Y+KIKTEAELISGGSLT S
Sbjct: 961  TPEMARQDYDPDMEVEGFEEYLDDAIYHKNNYDMRLGNLMHYHKIKTEAELISGGSLTSS 1020

Query: 1021 LSFTKKNEAESITMAVKSLRKEARGWFNENAELHFGHDKNVYARASAWYFVTYHHSYWGW 1080
            LSFT KNEAESI +AVKSLRKEARGWFNE A+LH+GH  NVYARASAWYFVTYHH+YWGW
Sbjct: 1021 LSFTMKNEAESIILAVKSLRKEARGWFNEKADLHYGHHTNVYARASAWYFVTYHHTYWGW 1080

Query: 1081 YDDGKKHGHFLSFPWCVHDKLIRIKKRKMNARARY 1115
             D  K HGHFLSFPWCV+DKLIRIK RK+N RARY
Sbjct: 1081 SDGRKNHGHFLSFPWCVYDKLIRIKHRKINCRARY 1115

[Close]
BLAST of Spg028666 vs. ExPASy Swiss-Prot
Match: Q9LQV2 (RNA-dependent RNA polymerase 1 OS=Arabidopsis thaliana OX=3702 GN=RDR1 PE=2 SV=1)

HSP 1 Score: 1355.5 bits (3507), Expect = 0.0e+00
Identity = 680/1117 (60.88%), Postives = 841/1117 (75.29%), Query Frame = 0 

Query: 1    MGKTIQLYGFPPGVLQEAVKAFVERFTGEGTIDAIKIKRSKGRGRRVYATIQFTDDEGAK 60
            MGKTIQ++GFP GV  E VK F+ER TG GT+ AIK+++ K  G RVYA +QFT +   +
Sbjct: 1    MGKTIQVFGFPNGVSAEEVKKFLERLTGSGTVYAIKVRQPKKGGPRVYAIVQFTSERHTR 60

Query: 61   LIISLANRRLCYDTSYLKAREWKQDILPDPLVFEYNFKGLRLHLGCQISKERFSVLWTES 120
            LII+ A  RL Y  SYLKA E +QDI+P P    +   GL++  GCQ+S ++F  LW+  
Sbjct: 61   LIITAAAERLYYGRSYLKAFEVEQDIVPKPRASLHTISGLKMFFGCQVSTKKFLTLWSAQ 120

Query: 121  TVSVDFGFERRELKFFISHPHVDYMLVLRYENIWQVELHKPQGQSVDYLLIQLFGAPRIY 180
             V V FG   R+L F  S    DY L L YENIWQ++LH PQG+S  +L+IQ+ GAP+I+
Sbjct: 121  DVCVSFGIGMRKLHFSFSWYQKDYRLELSYENIWQIDLHSPQGRSSKFLVIQVIGAPKIF 180

Query: 181  ERDTKSYRPITEDPFFTFSEEIDTKWFRATDFTPSCCIGQSAALCLEIPYGRQLPNFHDN 240
            E++ +    +     F +S+  D +W R TDFT S CIGQS A CLE+P    +P+F +N
Sbjct: 181  EKEDQPINLLFGIMDF-YSDGSDEQWIRTTDFTSSSCIGQSTAFCLELPVHLNVPDFREN 240

Query: 241  FAYYKEIKGKLTLV-SGSTYSSNVN-LVPVVRPPLNINLPYAILFKINLLVQQGCLPGPA 300
            FA Y E +    L+ SGS+YSSN N LVPVV PP   +LP+ ILFK+N LVQ  CL GPA
Sbjct: 241  FANYAEHRASSFLIESGSSYSSNANTLVPVVDPPPGFSLPFEILFKLNTLVQNACLSGPA 300

Query: 301  LDISFYQMVDPQIHNIAFIDHALKKLYHLKECCYNPSKWLDDEYRKYFRLKNPPLPPIFT 360
            LD+ FY++++ + ++ A IDH L+KL+HL ECCY P+ WL DEY+K+      PL P  +
Sbjct: 301  LDLDFYRLLNQKKYDRALIDHCLEKLFHLGECCYEPAHWLRDEYKKWISKGKLPLSPTIS 360

Query: 361  LNEGLVYVHRVQVTPCKVYFCGPEVNVSNRVLRGYPKYLDNFLRVSFVDEELDKMYSTEL 420
            L++GLVY++RVQVTP +VYF GPEVNVSNRVLR Y KY++NFLRVSFVDE+L+K+ S +L
Sbjct: 361  LDDGLVYMYRVQVTPARVYFSGPEVNVSNRVLRHYSKYINNFLRVSFVDEDLEKVRSMDL 420

Query: 421  SPRESSSLEDGKTKIFKRILSVLKDGITIGDKKFEFLAYSSSQLRENAVWMFAPRDGLTA 480
            SPR S+     +TK++ RI SVL+DGI IGDKKFEFLA+SSSQLREN+ WMFAP D +TA
Sbjct: 421  SPRSST---QRRTKLYDRIYSVLRDGIVIGDKKFEFLAFSSSQLRENSAWMFAPIDRITA 480

Query: 481  AKIRKGMGDFHSIRNVAKYAARLGQSFGSSTETLSVSRREVEVIPDIEVESGSGVNYVFS 540
            A IR  MGDF  IRNVAKYAARLGQSF SS ETL+V   E+EVIPD+E+ S  G  YVFS
Sbjct: 481  AHIRAWMGDFDHIRNVAKYAARLGQSFSSSRETLNVRSDEIEVIPDVEIIS-LGTRYVFS 540

Query: 541  DGIGKISASFARKVAQKCGI-RHTPSAFQIRYAGFKGVISIDPTSSVKLSLRNSMLKYES 600
            DGIGKISA FARKVA+KCG+   +PSAFQIRY G+KGV+++DP SS KLSLR SM K+ES
Sbjct: 541  DGIGKISAEFARKVARKCGLTEFSPSAFQIRYGGYKGVVAVDPNSSKKLSLRKSMSKFES 600

Query: 601  ADTKLDVLSWSKYHPCFLNRQLITLLSTLGVQDHVFESKQKELIEQLDTIFTDPMKAQQA 660
             +TKLDVL+WSKY PC++NRQLITLLSTLGV D VFE KQ+E++++LD I T P++A +A
Sbjct: 601  ENTKLDVLAWSKYQPCYMNRQLITLLSTLGVTDSVFEKKQREVVDRLDAILTHPLEAHEA 660

Query: 661  LELMSPGENTNILKEMILCGYRPDSEPFLSMMLHTFRESKLLELRRKSRIFIPNGRAMMG 720
            L LM+PGENTNILK +ILCGY+PD+EPFLSMML  FR SKLLELR K+RIFI  GR+MMG
Sbjct: 661  LGLMAPGENTNILKALILCGYKPDAEPFLSMMLQNFRASKLLELRTKTRIFISGGRSMMG 720

Query: 721  CLDETGNLDYGEVFVQCSAHQKLHNDHIIFRRSKSNRHFIVTGTVVVAKNPCLHPGDVRV 780
            CLDET  L+YG+V VQ S               +  R FI+TG VVVAKNPCLHPGDVRV
Sbjct: 721  CLDETRTLEYGQVVVQYSDPM------------RPGRRFIITGPVVVAKNPCLHPGDVRV 780

Query: 781  LTAVDVPSLHHMVDCVVFPQRGSRPHPNECSGSDLDGDIYFVCWDPDLIPPQQVEPMDYT 840
            L AV+VP+L+HMVDCVVFPQ+G RPHPNECSGSDLDGDIYFVCWD +L+PP+  EPMDYT
Sbjct: 781  LQAVNVPALNHMVDCVVFPQKGLRPHPNECSGSDLDGDIYFVCWDQELVPPRTSEPMDYT 840

Query: 841  PVPSKLLDHDVTMEEVQEYFANYMVNDSLGIIANAHTAFADREPEKAMSKTCIKLAKLFS 900
            P P+++LDHDVT+EEV+EYFANY+VNDSLGIIANAHTAFAD+EP KA S  CI+LAK FS
Sbjct: 841  PEPTQILDHDVTIEEVEEYFANYIVNDSLGIIANAHTAFADKEPLKAFSDPCIELAKKFS 900

Query: 901  IAVDFPKTGVPALISADLRVQAYPDFMDKADKVSYKSDNVLGKLFR-MLDNVGPKIKIRS 960
             AVDFPKTGV A+I   L V+ YPDFM+K DK +Y+S NV+GKLFR + +   P I I+S
Sbjct: 901  TAVDFPKTGVAAVIPQHLYVKEYPDFMEKPDKPTYESKNVIGKLFREVKERAPPLISIKS 960

Query: 961  LTFTREEAQQAYDPDMEVEGFEEYLDDAFYHKNNYDMRLGNLMNYYKIKTEAELISGGSL 1020
              FT + A ++YD DMEV+GFEEY+D+AFY K NYD +LGNLM+YY IKTEAE++SGG +
Sbjct: 961  --FTLDVASKSYDKDMEVDGFEEYVDEAFYQKANYDFKLGNLMDYYGIKTEAEILSGGIM 1020

Query: 1021 TKSLSFTKKNEAESITMAVKSLRKEARGWFNENAELHFGHDKNVYARASAWYFVTYHHSY 1080
              S SFTK+ +AESI  AV++LRKE    FN + E     ++N  A+ASAWY VTYH SY
Sbjct: 1021 RMSKSFTKRRDAESIGRAVRALRKETLSLFNASEE-----EENESAKASAWYHVTYHSSY 1080

Query: 1081 WGWYDDGKKHGHFLSFPWCVHDKLIRIKKRKMNARAR 1114
            WG Y++G    HFLSF WCV+DKL+RIKK  +  R R
Sbjct: 1081 WGLYNEGLNRDHFLSFAWCVYDKLVRIKKTNLGRRQR 1093

[Close]
BLAST of Spg028666 vs. ExPASy Swiss-Prot
Match: Q0DXS3 (Probable RNA-dependent RNA polymerase 1 OS=Oryza sativa subsp. japonica OX=39947 GN=RDR1 PE=2 SV=2)

HSP 1 Score: 904.8 bits (2337), Expect = 9.5e-262
Identity = 454/739 (61.43%), Postives = 574/739 (77.67%), Query Frame = 0 

Query: 376  VYFCGPEVNVSNRVLRGYPKYLDNFLRVSFVDEELDKMYSTELSPRESSSLEDGKTKIFK 435
            VYF GPE+NVSNRV+R +   ++NFLR+SFVDE+ +K+ +T+LSPR +S  +  +T ++K
Sbjct: 9    VYFYGPEINVSNRVVRNFSSDIENFLRISFVDEDCEKLRATDLSPRSASGHDANRTALYK 68

Query: 436  RILSVLKDGITIGDKKFEFLAYSSSQLRENAVWMFAPRDGLTAAKIRKGMGDFHSIRNVA 495
            R+LSVL DGITIG K FEFLA+SSSQLR+N+ WMFA R GL A+ IR  MGDF +IRNVA
Sbjct: 69   RVLSVLSDGITIGGKNFEFLAFSSSQLRDNSAWMFASRQGLAASDIRTWMGDFRNIRNVA 128

Query: 496  KYAARLGQSFGSSTETLSVSRREVEVIPDIEVESGSGVNYVFSDGIGKISASFARKVAQK 555
            KYAARLGQSF SSTETL V + EVE I DI+    +G  +VFSDGIGKIS++FA +VA K
Sbjct: 129  KYAARLGQSFSSSTETLKVQKYEVEEISDIK----NGTQHVFSDGIGKISSAFANEVAMK 188

Query: 556  CGI-RHTPSAFQIRYAGFKGVISIDPTSSVKLSLRNSMLKYESADTKLDVLSWSKYHPCF 615
            C + R  PSAFQIRY G+KGV+++DPTS  KLSLR SMLK++S +  +DVL++SKY P F
Sbjct: 189  CNLKRFAPSAFQIRYGGYKGVVAVDPTSRWKLSLRKSMLKFQSDNITVDVLAYSKYQPGF 248

Query: 616  LNRQLITLLSTLGVQDHVFESKQKELIEQLDTIFTDPMKAQQALELMSPGENTNILKEMI 675
            LNRQLITLLSTLGV+D VFE KQ+E + QL+ + TDP  A +A+ELM  GE TN +KE++
Sbjct: 249  LNRQLITLLSTLGVRDSVFEQKQEEAVNQLNKMVTDPQAAIEAIELMPMGEITNAVKELL 308

Query: 676  LCGYRPDSEPFLSMMLHTFRESKLLELRRKSRIFIPNGRAMMGCLDETGNLDYGEVFVQC 735
            LCGY+PD EP+LSM+L TFR SKLLEL+ KSRI IP GRAMMGCLDET  L YG+VF++ 
Sbjct: 309  LCGYQPDDEPYLSMLLQTFRASKLLELKTKSRILIPKGRAMMGCLDETRTLKYGQVFIRA 368

Query: 736  SAHQKLHNDHIIFRRSKSNRHFIVTGTVVVAKNPCLHPGDVRVLTAVDVPSLHHMVDCVV 795
            ++     ND         N  F VTG VV+AKNPCLHPGD+R+L AVDVP LHHM +CVV
Sbjct: 369  TSGV---ND---------NDRFTVTGKVVIAKNPCLHPGDIRILHAVDVPVLHHMFNCVV 428

Query: 796  FPQRGSRPHPNECSGSDLDGDIYFVCWDPDLIPPQQVEPMDYTPVPSKLLDHDVTMEEVQ 855
            FPQ+G RPHPNECSGSDLDGDIYFV WDP LIPP+ V PMDYTP P++ LDHDVT+EEV+
Sbjct: 429  FPQQGPRPHPNECSGSDLDGDIYFVSWDPSLIPPRMVTPMDYTPAPTETLDHDVTIEEVE 488

Query: 856  EYFANYMVNDSLGIIANAHTAFADREPEKAMSKTCIKLAKLFSIAVDFPKTGVPALISAD 915
            EYF NY+VN+SLG+IANAH  FAD+E  KA S  CI+LAKLFSIAVDFPKTGVPALI  +
Sbjct: 489  EYFTNYIVNESLGMIANAHVVFADKEDLKAESSPCIELAKLFSIAVDFPKTGVPALIPPE 548

Query: 916  LRVQAYPDFMDKADKVSYKSDNVLGKLFRMLDNVGPKIKIRSLTFTREEAQQAYDPDMEV 975
            L V+ YPDFM+K DKV+Y+S  V+GKL+R +    P IK     FTRE A+++YD DM V
Sbjct: 549  LHVKEYPDFMEKLDKVTYESKGVIGKLYREIKKHTPHIK----HFTREVARRSYDTDMIV 608

Query: 976  EGFEEYLDDAFYHKNNYDMRLGNLMNYYKIKTEAELISGGSLTKSLSFTKKNEAESITMA 1035
            +G+E+Y+ +A   K+ YD +LGNLM++Y IK+EAE+ISG  L  + +FTKK++A++I +A
Sbjct: 609  DGYEDYITEAMALKDEYDFKLGNLMDHYGIKSEAEIISGCILKMAKNFTKKSDADAIRLA 668

Query: 1036 VKSLRKEARGWFNENA--ELHFGHDKNVYARASAWYFVTYHHSYWGWYDDGKKHGHFLSF 1095
            V+SLRKEAR  F+E +  +   GHD +  A+ASAWY VTYH  +WG Y++G +  HF+SF
Sbjct: 669  VRSLRKEARSRFSEMSLDDNGHGHDAS-EAKASAWYHVTYHPEFWGCYNEGYERPHFISF 726

Query: 1096 PWCVHDKLIRIKKRKMNAR 1112
            PWC+++KL+RIK+R+   R
Sbjct: 729  PWCIYEKLLRIKQRRKFVR 726

[Close]
BLAST of Spg028666 vs. ExPASy Swiss-Prot
Match: O82504 (RNA-dependent RNA polymerase 2 OS=Arabidopsis thaliana OX=3702 GN=RDR2 PE=1 SV=1)

HSP 1 Score: 761.1 bits (1964), Expect = 1.7e-218
Identity = 435/1125 (38.67%), Postives = 666/1125 (59.20%), Query Frame = 0 

Query: 4    TIQLYGFPPGVLQEAVKAFVERFTGEGTIDAIKIKRSKGRGR-RVYATIQFTDDE-GAKL 63
            T+++   P  ++ + +  F+E   GE T+ A++I  ++   + R +A +QFT  E  ++ 
Sbjct: 11   TVKISNVPQTIVADELLRFLELHLGEDTVFALEIPTTRDNWKPRDFARVQFTTLEVKSRA 70

Query: 64   IISLANRRLCYDTSYLKAREWKQDILPDPLVFEYNFKGLRLHLGCQISKE-RFSVLWTES 123
             +  +  +L + T  L+  E   DI+P P+        + L +G   S E RF  L    
Sbjct: 71   QLLSSQSKLLFKTHNLRLSEAYDDIIPRPVDPRKRLDDIVLTVGFPESDEKRFCALEKWD 130

Query: 124  TVSVDFGFERRELKFFISHPHVDYMLVLRYENIWQVELHKPQGQS--VDYLLIQLFGAPR 183
             V      E+R ++F++      Y + +R+E+I +       G +  +D  L++L   P+
Sbjct: 131  GVRCWILTEKRRVEFWVWESGDCYKIEVRFEDIIETLSCCVNGDASEIDAFLLKLKYGPK 190

Query: 184  IYERDTKSYRPITEDPFFTF-SEEIDTKWFRATDFTPSCCIGQSAALCLEIPYGRQLPNF 243
            +++R T       +   + F  E+ D  W R TDF+ S  IG S   CLE+  G  + + 
Sbjct: 191  VFKRVTVHIATKFKSDRYRFCKEDFDFMWIRTTDFSGSKSIGTSTCFCLEVHNGSTMLDI 250

Query: 244  HDNFAYYKEIKGKLTLVSGSTYSSNVNLVPVVRPP-LNINLPYAILFKINLLVQ-QGCLP 303
                 YY+E    LT V G T++S   +VP++    L +  PY ILF++N LV  Q    
Sbjct: 251  FSGLPYYREDTLSLTYVDGKTFASAAQIVPLLNAAILGLEFPYEILFQLNALVHAQKISL 310

Query: 304  GPALDISFYQMVDPQIHNIAFIDHALKKLYHLKECCYNPSKWLDDEYRKYF-RLKNPPLP 363
              A D+   +++       A +   LKKL+     CY+P  ++  + +    ++K+ P  
Sbjct: 311  FAASDMELIKILRGMSLETALV--ILKKLHQQSSICYDPVFFVKTQMQSVVKKMKHSPAS 370

Query: 364  PIFTLNE-GLVYVHRVQVTPCKVYFCGPEVNVSNRVLRGYPKYLDNFLRVSFVDEELDKM 423
                L E  ++   R  VTP K+Y  GPE+  +N V++ + +++ +F+RV+FV+E+  K+
Sbjct: 371  AYKRLTEQNIMSCQRAYVTPSKIYLLGPELETANYVVKNFAEHVSDFMRVTFVEEDWSKL 430

Query: 424  YSTELS--PRESSSLEDGKTKIFKRILSVLKDGITIGDKKFEFLAYSSSQLRENAVWMFA 483
             +  LS   +E   ++  +T I+ R+LS+L +GIT+G K+FEFLA+S+SQLR N+VWMFA
Sbjct: 431  PANALSVNSKEGYFVKPSRTNIYNRVLSILGEGITVGPKRFEFLAFSASQLRGNSVWMFA 490

Query: 484  PRDGLTAAKIRKGMGDFHSIRNVAKYAARLGQSFGSSTETLSVSRREVEVIPDIEVESGS 543
              + + A  IR+ MG F  IR+++K AAR+GQ F +S +TL V  ++VE IPDIEV +  
Sbjct: 491  SNEKVKAEDIREWMGCFRKIRSISKCAARMGQLFSASRQTLIVRAQDVEQIPDIEVTT-D 550

Query: 544  GVNYVFSDGIGKISASFARKVAQKCGIRHTPSAFQIRYAGFKGVISIDPTSSVKLSLRNS 603
            G +Y FSDGIGKIS +FA++VAQKCG+ H PSAFQIRY G+KGVI++D +S  KLSLR+S
Sbjct: 551  GADYCFSDGIGKISLAFAKQVAQKCGLSHVPSAFQIRYGGYKGVIAVDRSSFRKLSLRDS 610

Query: 604  MLKYESADTKLDVLSWSKYHPCFLNRQLITLLSTLGVQDHVFESKQKELIEQLDTIFTDP 663
            MLK++S +  L+V  W++  PCFLNR++I LLSTLG++D +FE+ Q   +  L  +  D 
Sbjct: 611  MLKFDSNNRMLNVTRWTESMPCFLNREIICLLSTLGIEDAMFEAMQAVHLSMLGNMLEDR 670

Query: 664  MKAQQALELMSPGENTNILKEMILCGYRPDSEPFLSMMLHTFRESKLLELRRKSRIFIPN 723
              A   L+ +S   + N+L +M+L GY P SEP+LSMML    ES+L EL+ + RI +P 
Sbjct: 671  DAALNVLQKLSGENSKNLLVKMLLQGYAPSSEPYLSMMLRVHHESQLSELKSRCRILVPK 730

Query: 724  GRAMMGCLDETGNLDYGEVFVQCS-AHQKLHNDHIIFRRSKSNRHFIVTGTVVVAKNPCL 783
            GR ++GC+DE G L+YG+V+V+ +    +L +    + R       +V G VVV KNPCL
Sbjct: 731  GRILIGCMDEMGILEYGQVYVRVTLTKAELKSRDQSYFRKIDEETSVVIGKVVVTKNPCL 790

Query: 784  HPGDVRVLTAVDVPSLHH--MVDCVVFPQRGSRPHPNECSGSDLDGDIYFVCWDPDLIPP 843
            HPGD+RVL A+          +DC++FPQ+G RPHPNECSG DLDGD +FV WD  +IP 
Sbjct: 791  HPGDIRVLDAIYEVHFEEKGYLDCIIFPQKGERPHPNECSGGDLDGDQFFVSWDEKIIPS 850

Query: 844  QQVEPMDYTPVPSKLLDHDVTMEEVQEYFANYMVNDSLGIIANAHTAFADREPEKAMSKT 903
            +   PMDY     +L+DHDVT+EE+ ++F +YM++D+LG+I+ AH   ADR+PEKA S+ 
Sbjct: 851  EMDPPMDYAGSRPRLMDHDVTLEEIHKFFVDYMISDTLGVISTAHLVHADRDPEKARSQK 910

Query: 904  CIKLAKLFSIAVDFPKTGVPALISADLRVQAYPDFMDKADKVSYKSDNVLGKLFRMLDNV 963
            C++LA L S AVDF KTG PA +   L+ + +PDF+++ +K +Y S++V GKL+R + + 
Sbjct: 911  CLELANLHSRAVDFAKTGAPAEMPYALKPREFPDFLERFEKPTYISESVFGKLYRAVKS- 970

Query: 964  GPKIKIRSLTFTREEAQQ----AYDPDMEVEGFEEYLDDAFYHKNNYDMRLGNLMNYYKI 1023
                   SL   + EA+     AYD  +E  GFE +++ A  H++ Y  +L +LM YY  
Sbjct: 971  -------SLAQRKPEAESEDTVAYDVTLEEAGFESFIETAKAHRDMYGEKLTSLMIYYGA 1030

Query: 1024 KTEAELISGGSLTKSLSFTKKNE-----AESITMAVKSLRKEARGWFNENAELHFGHDKN 1083
              E E+++G   TK +   + N       + IT++VK L KEA GWF ++ E     ++ 
Sbjct: 1031 ANEEEILTGILKTKEMYLARDNRRYGDMKDRITLSVKDLHKEAMGWFEKSCE----DEQQ 1090

Query: 1084 VYARASAWYFVTYHHSYWGWYDDGKKHGHFLSFPWCVHDKLIRIK 1105
                ASAWY+VTY+ +    + D K    FLSFPW V D L+ IK
Sbjct: 1091 KKKLASAWYYVTYNPN----HRDEKL--TFLSFPWIVGDVLLDIK 1114

[Close]
BLAST of Spg028666 vs. ExPASy Swiss-Prot
Match: Q7XM31 (Probable RNA-dependent RNA polymerase 2 OS=Oryza sativa subsp. japonica OX=39947 GN=RDR2 PE=2 SV=1)

HSP 1 Score: 724.2 bits (1868), Expect = 2.3e-207
Identity = 424/1136 (37.32%), Postives = 640/1136 (56.34%), Query Frame = 0 

Query: 4    TIQLYGFPPGVLQEAVKAFVERFTG-EGTIDAIKIKRS-KGRGRRVYATIQFTDDEGAKL 63
            ++++   PP  +   + AF +      G   A +I  + +G   R + T+QF     A  
Sbjct: 11   SLRVSNIPPSAVAAELLAFFDSAVAVAGGAFACEIAAAHRGWLSRGHGTVQFGSAAAAAA 70

Query: 64   IISLAN--RRLCYDTSYLKAREWKQDILPDPLVFEYNFKGLRLHLGCQISKERFSVLWTE 123
               LA+  R   +  + L       D+LP          G  L +G ++++  F      
Sbjct: 71   AAGLASSGRLPRFLGALLSVSPSPVDLLPRASDLSLRAAGAGLVVGDRVAERVFEAADAW 130

Query: 124  STVSVDFGFERRELKFFISHPHVDYMLVLRYENIWQVELHKPQGQSVDYLLIQLFGAPRI 183
              V  +    +R +  ++ H    Y L + +E++         G     +L+QL  APRI
Sbjct: 131  DGVRAEVIPGKRRVDLYLEHDSQRYKLEVLFEDMKDCLGCTLDGMGA--ILLQLNYAPRI 190

Query: 184  YE--RDTKSYRPITEDPFFTFSEEIDTKWFRATDFTPSCCIGQSAALCLEIPYGRQLPNF 243
            +             +D F    E+    W RA DFTP+   G+ + L L++     + + 
Sbjct: 191  HTAISGPAVNSRFMDDRFHACKEDAKFSWVRALDFTPNYSFGRCSTLVLKLGKSALVSDI 250

Query: 244  HDNFAYYKEIKGKLTLVSGSTYSSNVNLVPVVRPPLNINLPYAILFKINLLVQQGCLPGP 303
              +  +   + G+LT+ S     ++ N+VP+V  P + ++PY +LF++N L+  G +   
Sbjct: 251  LKSLPFSGNL-GELTMNSMDGVGASSNVVPLVHCPRDYSVPYEVLFRLNSLMHMGKIVAK 310

Query: 304  ALDISFYQMVDPQIHNIAFIDHALKKLYHLKECCYNPSKWLDDEYRKYFRLKNPPLPPIF 363
             ++   ++ +     +++      +K++ L+  CY P +++  E     R  N     + 
Sbjct: 311  HVNADLFKALQELPVDVS--RRIFEKMHKLESTCYGPLQFIQQEAYSMKRSHN-----VL 370

Query: 364  TLNEG-------LVYVHRVQVTPCKVYFCGPEVNVSNRVLRGYPKYLDNFLRVSFVDEEL 423
              NEG       L+  +RV +TP K++  GPE  V+N V++ +  Y  +F+RV+FVDE+ 
Sbjct: 371  LSNEGEGEGERKLMKCYRVNITPSKIFCFGPEEEVTNYVVKHHSAYASDFVRVTFVDEDW 430

Query: 424  DKMYSTELSPRESSSL--EDGKTKIFKRILSVLKDGITIGDKKFEFLAYSSSQLRENAVW 483
             K+ S  +S R       +  KT ++ RILS+LK G +IG K FEFLA+S+SQLR N+VW
Sbjct: 431  SKLSSNAISARIEQGFFSKPFKTGLYYRILSILKKGFSIGPKNFEFLAFSASQLRGNSVW 490

Query: 484  MFAPRDGLTAAKIRKGMGDFHSIRNVAKYAARLGQSFGSSTETLSVSRREVEVIPDIEVE 543
            MFA    L A  IR+ MG F +IR+V+K AAR+GQ F SS +T  V R +VEVIPDIE+ 
Sbjct: 491  MFASNASLNAGGIRRWMGHFENIRSVSKCAARMGQLFSSSRQTFEVLRWDVEVIPDIEIT 550

Query: 544  SGSGVNYVFSDGIGKISASFARKVAQKCGIRHT--PSAFQIRYAGFKGVISIDPTSSVKL 603
            +  G  Y+FSDGIGKIS  FA++VA   G+  T  PSAFQIRY G+KGVI+IDP SS+ L
Sbjct: 551  T-DGSKYIFSDGIGKISLRFAKRVAHHVGLDPTNLPSAFQIRYGGYKGVIAIDPMSSIDL 610

Query: 604  SLRNSMLKYESADTKLDVLSWSKYHPCFLNRQLITLLSTLGVQDHVFESKQKELIEQLDT 663
            SLR SM K+ES    L++ SWSK  PC++NR++I+LLSTLG++D +F + Q++ + + + 
Sbjct: 611  SLRPSMKKFESESRMLNITSWSKSQPCYVNREIISLLSTLGIRDEIFVAMQQDEMRETEE 670

Query: 664  IFTDPMKAQQALELMSPGENTNILKEMILCGYRPDSEPFLSMMLHTFRESKLLELRRKSR 723
            + T+   A   L  +  G  T    +M+L GY P SEP+LSM+L   +E++L ++R + +
Sbjct: 671  MLTNKEVALSVLGKLG-GSETKTAVKMLLQGYEPSSEPYLSMILKAHQENRLTDIRTRCK 730

Query: 724  IFIPNGRAMMGCLDETGNLDYGEVFVQCSAHQKLHND-HIIFRRSKSNRHFIVTGTVVVA 783
            I +P GR ++GCLDETG L+YG+V+++ + + K   D +  +  +   +   V G V + 
Sbjct: 731  IHVPKGRVLIGCLDETGVLEYGQVYIRITKNSKEQKDSNQSYFYNDDGKTATVVGKVAIT 790

Query: 784  KNPCLHPGDVRVLTAVDVPSLHHMVDCVVFPQRGSRPHPNECSGSDLDGDIYFVCWDPDL 843
            KNPCLHPGD+RVL A+  P L  MVDC+VFPQRG RPHPNECSG DLDGD+YF+ WD  L
Sbjct: 791  KNPCLHPGDIRVLEAIYDPDLVGMVDCLVFPQRGERPHPNECSGGDLDGDLYFITWDDKL 850

Query: 844  IPPQQVEPMDYTPVPSKLLDHDVTMEEVQEYFANYMVNDSLGIIANAHTAFADREPEKAM 903
            IP +   PMDYT    +++DH VT+EE+Q++F +YM+NDSLG I+ AH   ADR P KA 
Sbjct: 851  IPEKVDTPMDYTATRPRIMDHVVTLEEIQKHFVDYMINDSLGAISTAHLIHADRSPLKAR 910

Query: 904  SKTCIKLAKLFSIAVDFPKTGVPALISADLRVQAYPDFMDKADKVSYKSDNVLGKLFR-M 963
            S  C++LA L S+AVDF KTG PA +   LR + YPDFM++ +K  Y S+ VLGKL+R  
Sbjct: 911  SPECLQLATLHSMAVDFAKTGAPAEMPRTLRPREYPDFMERWEKPMYISNGVLGKLYRSA 970

Query: 964  LDNVGPKIKIRSLTFTREEAQQAYDPDMEVEGFEEYLDDAFYHKNNYDMRLGNLMNYYKI 1023
            + ++       +L+ +  +    YDPD+EV G +E+L  A  +   Y+ +L  LMNYY+ 
Sbjct: 971  MGHMEKSGDSGALSSSSAQPSPTYDPDLEVPGSDEFLQAAEEYYELYEEKLTTLMNYYRA 1030

Query: 1024 KTEAELISGGSLTKSLSFTKKNE-----AESITMAVKSLRKEARGWFNENAELHFGHDKN 1083
            + E E+++G    K L   + N+      + I  AV +L +EARGW      L    +++
Sbjct: 1031 ELEDEILTGNIRNKMLYLKRDNKRYFEMKDRIVAAVDALHREARGWL-----LSSRKEED 1090

Query: 1084 VYARASAWYFVTYHHSYWGWYDDGKKHGHFLSFPWCVHDKLIRIKKRKMNARARYR 1116
                ASAWY VTYH        D ++   F SFPW   D L+ IK      R R +
Sbjct: 1091 ASRMASAWYRVTYH-------PDRRRGKRFWSFPWIACDNLLAIKASSQLRRRRQK 1122

[Close]
BLAST of Spg028666 vs. ExPASy Swiss-Prot
Match: Q9SG02 (RNA-dependent RNA polymerase 6 OS=Arabidopsis thaliana OX=3702 GN=RDR6 PE=1 SV=1)

HSP 1 Score: 572.8 bits (1475), Expect = 8.6e-162
Identity = 386/1074 (35.94%), Postives = 570/1074 (53.07%), Query Frame = 0 

Query: 95   YNFKGLRLHLGCQISKERFSVLWTESTV---------SVDFGFERR---ELKFFISHP-- 154
            Y   G+ L +G  +S++ F V W    V         +  F F +      K  + H   
Sbjct: 130  YKLAGITLEIGTLVSRDDFFVSWRAEGVDFLVDPFDNTCKFCFRKSTAFSFKDAVMHAVI 189

Query: 155  HVDYMLVLRYENIWQVELHKPQGQSVDYLLIQLFGAPRIYERDTKSYRPITEDPFFTFSE 214
            + DY L L   +I  V  +K     V  L++QL  +PR++      YR   +D + T   
Sbjct: 190  NCDYKLELLVRDIQTVRQYKTLHGFV--LILQLASSPRVW------YRTADDDIYDTVPG 249

Query: 215  EI---DTKWFRATDFTPSCCIGQ--SAALCLEIPYGRQLPNFHDNFAYYKEIKGKLTLVS 274
            ++   D  W R TDFT    IG+  S  + +   Y  +L    D F   +  + ++    
Sbjct: 250  DLLDDDDPWIRTTDFTQVGAIGRCHSYRVLISPRYENKLRTALDYFRMRRVQEERV---- 309

Query: 275  GSTYSSNVNLVPVVRPPLNIN---------LPYAILFKINLLVQQGCLPGPALDISFYQM 334
               +   +   P    P++ +         + + I+F +N ++ +G      L   F+ +
Sbjct: 310  --RWPPRIRNEPCFGEPVSDHFFCIHHKEGISFEIMFLVNSVLHRGVFNQFQLTERFFDL 369

Query: 335  V--DPQIHNIAFIDHALKKLYHLKECCYNPSKWLDDEYRKYFRLKNPPLPPIFTLNEGLV 394
            +   P+  NIA    +LK L   K   ++  K L  +  + +  KNP L      +E + 
Sbjct: 370  LRNQPKDVNIA----SLKHLCTYKRPVFDAYKRL--KLVQEWIQKNPKLLGSHEQSEDIS 429

Query: 395  YVHRVQVTPCKVYFCGPEVNVSNRVLRGYPKYLDNFLRVSFVDEELDKMYSTELS----- 454
             + R+ +TP + Y   PEV +SNRVLR Y    + FLRV+F+DE +  + S  LS     
Sbjct: 430  EIRRLVITPTRAYCLPPEVELSNRVLRRYKAVAERFLRVTFMDESMQTINSNVLSYFVAP 489

Query: 455  --PRESSSLEDGKTKIFKRILSVLKDGITIGDKKFEFLAYSSSQLRENAVWMFAPRDGLT 514
                 +SS    KT +FKR+ S+L DG  +  +K+ FLA+S++QLR+ + W FA      
Sbjct: 490  IVKDLTSSSFSQKTYVFKRVKSILTDGFKLCGRKYSFLAFSANQLRDRSAWFFAEDGKTR 549

Query: 515  AAKIRKGMGDFHSIRNVAKYAARLGQSFGSSTETLSVSRREVEV-IPDIEVESGSGVNYV 574
             + I+  MG F   +NVAK AAR+G  F S+  T+ V   EV+  +PDIE        YV
Sbjct: 550  VSDIKTWMGKFKD-KNVAKCAARMGLCFSSTYATVDVMPHEVDTEVPDIERN-----GYV 609

Query: 575  FSDGIGKISASFARKVAQ--KCGIRHTPSAFQIRYAGFKGVISIDPTSS--VKLSLRNSM 634
            FSDGIG I+   A +V +  K  + ++P A+QIRYAGFKGV++  P+ S  ++L+LR+SM
Sbjct: 610  FSDGIGTITPDLADEVMEKLKLDVHYSPCAYQIRYAGFKGVVARWPSKSDGIRLALRDSM 669

Query: 635  LKYESADTKLDVLSWSKYHPCFLNRQLITLLSTLGVQDHVFESKQKELIEQLDTIFTDPM 694
             K+ S  T L++ SW+++ P FLNRQ+ITLLS LGV D +F   Q+ ++ +L+ I  D  
Sbjct: 670  KKFFSKHTILEICSWTRFQPGFLNRQIITLLSVLGVPDEIFWDMQESMLYKLNRILDDTD 729

Query: 695  KAQQALELMSPGENTNILKEMILCGYRPDSEPFLSMMLHTFRESKLLELRRKSRIFIPNG 754
             A + L   S  E  N    M+  G++P +EP L  ML + R ++L  LR KSRIF+ +G
Sbjct: 730  VAFEVL-TASCAEQGNTAAIMLSAGFKPKTEPHLRGMLSSVRIAQLWGLREKSRIFVTSG 789

Query: 755  RAMMGCLDETGNLDYGEVFVQCS--AHQKLHNDH-IIFRRSKSNRHFIVTGTVVVAKNPC 814
            R +MGCLDE G L++G+ F+Q S  + +   + H   F+ +K++   +V G V +AKNPC
Sbjct: 790  RWLMGCLDEAGILEHGQCFIQVSKPSIENCFSKHGSRFKETKTDLE-VVKGYVAIAKNPC 849

Query: 815  LHPGDVRVLTAVDVPSLHHMVDCVVFPQRGSRPHPNECSGSDLDGDIYFVCWDPDLIPP- 874
            LHPGDVR+L AVDVP LHHM DC++FPQ+G RPH NE SGSDLDGD+YFV WD  LIPP 
Sbjct: 850  LHPGDVRILEAVDVPQLHHMYDCLIFPQKGDRPHTNEASGSDLDGDLYFVAWDQKLIPPN 909

Query: 875  -QQVEPMDYTPVPSKLLDHDVTMEEVQEYFANYMVNDSLGIIANAHTAFADREPEKAMSK 934
             +    M Y     K L   V  +++ ++FA  + N+ LG I NAH   ADR    AM +
Sbjct: 910  RKSYPAMHYDAAEEKSLGRAVNHQDIIDFFARNLANEQLGTICNAHVVHADRSEYGAMDE 969

Query: 935  TCIKLAKLFSIAVDFPKTGVPALISADLRVQAYPDFMDKADKVSYKSDNVLGKLFRMLDN 994
             C+ LA+L + AVDFPKTG    +   L+ + YPDFM K D  +YKS+ +LG+L+R +  
Sbjct: 970  ECLLLAELAATAVDFPKTGKIVSMPFHLKPKLYPDFMGKEDYQTYKSNKILGRLYRRVKE 1029

Query: 995  VGPKIKIRSLTFTREEAQQAYDPDMEVEGFEEYLDDAFYHKNNYDMRLGNLMNYYKIKTE 1054
            V  +    S   + + +   YD  +E+ GFE+ + +A+ HK  YD +L  L+  YK++ E
Sbjct: 1030 VYDEDAEASSEESTDPSAIPYDAVLEIPGFEDLIPEAWGHKCLYDGQLIGLLGQYKVQKE 1089

Query: 1055 AELISG--GSLTKSLSFTKKNEAESITMAVKSLRKEARGWFNENAELHFG---HDKNVY- 1107
             E+++G   S+ K  S  +    E +  +  SL+KE R  F E    H      +KN+  
Sbjct: 1090 EEIVTGHIWSMPKYTSKKQGELKERLKHSYNSLKKEFRKVFEETIPDHENLSEEEKNILY 1149

[Close]
BLAST of Spg028666 vs. ExPASy TrEMBL
Match: A0A6J1FR02 (RNA-dependent RNA polymerase OS=Cucurbita moschata OX=3662 GN=LOC111447986 PE=3 SV=1)

HSP 1 Score: 2018.8 bits (5229), Expect = 0.0e+00
Identity = 980/1115 (87.89%), Postives = 1042/1115 (93.45%), Query Frame = 0 

Query: 1    MGKTIQLYGFPPGVLQEAVKAFVERFTGEGTIDAIKIKRSKGRGRRVYATIQFTDDEGAK 60
            MGKTIQLYGFP GVLQE+VKAFVERFTGEG+IDAI +KRS+GRG+R+YA IQF DD GAK
Sbjct: 1    MGKTIQLYGFPSGVLQESVKAFVERFTGEGSIDAINVKRSRGRGKRLYAIIQFIDDVGAK 60

Query: 61   LIISLANRRLCYDTSYLKAREWKQDILPDPLVFEYNFKGLRLHLGCQISKERFSVLWTES 120
            LIISLAN  L Y TSYLKAREWKQDIL DPLVFEYNFKGL LHLGCQIS+E F VLW ES
Sbjct: 61   LIISLANASLRYGTSYLKAREWKQDILQDPLVFEYNFKGLELHLGCQISREEFFVLWRES 120

Query: 121  TVSVDFGFERRELKFFISHPHVDYMLVLRYENIWQVELHKPQGQSVDYLLIQLFGAPRIY 180
             VSV+F FERR+LKFFISHP VDYMLVLRYENIWQVELHKPQGQS+DYLLIQL GAPRIY
Sbjct: 121  NVSVNFEFERRDLKFFISHPRVDYMLVLRYENIWQVELHKPQGQSIDYLLIQLVGAPRIY 180

Query: 181  ERDTKSYRPITEDPFFTFSEEIDTKWFRATDFTPSCCIGQSAALCLEIPYGRQLPNFHDN 240
            ERDTK +  I+EDPF +FS+E+DTKWFRATDFTPSCCIGQS ALCLEIPYGR LPNFHD 
Sbjct: 181  ERDTKLFGHISEDPFLSFSKEMDTKWFRATDFTPSCCIGQSGALCLEIPYGRLLPNFHDK 240

Query: 241  FAYYKEIKGKLTLVSGSTYSSNVNLVPVVRPPLNINLPYAILFKINLLVQQGCLPGPALD 300
            FAY+ EIKGK TL SGSTYSSNVNLVPVVRPPL+I+LPYAILFKINLLVQQGCLPGP+LD
Sbjct: 241  FAYFNEIKGKFTLASGSTYSSNVNLVPVVRPPLSIHLPYAILFKINLLVQQGCLPGPSLD 300

Query: 301  ISFYQMVDPQIHNIAFIDHALKKLYHLKECCYNPSKWLDDEYRKYFRLKNPPLPPIFTLN 360
            ISFY+MVDPQIHNIAFID AL+KLY LKECCYNPSKWL +EYRKY +L NPP PP  +L+
Sbjct: 301  ISFYEMVDPQIHNIAFIDRALRKLYDLKECCYNPSKWLGEEYRKYSKLTNPPQPPNLSLD 360

Query: 361  EGLVYVHRVQVTPCKVYFCGPEVNVSNRVLRGYPKYLDNFLRVSFVDEELDKMYSTELSP 420
            EGLVYVHRVQVTPC+VYFCGPEVNVSNRVLR YP+YLDNFLRVSFVDEELDK+YSTELSP
Sbjct: 361  EGLVYVHRVQVTPCRVYFCGPEVNVSNRVLRRYPEYLDNFLRVSFVDEELDKLYSTELSP 420

Query: 421  RESSSLEDGKTKIFKRILSVLKDGITIGDKKFEFLAYSSSQLRENAVWMFAPRDGLTAAK 480
            RESSSLEDGKTKIFKRILSVLKDGITIGDKKFEFLAYSSSQLRENAVWMFAPRDG+TAAK
Sbjct: 421  RESSSLEDGKTKIFKRILSVLKDGITIGDKKFEFLAYSSSQLRENAVWMFAPRDGITAAK 480

Query: 481  IRKGMGDFHSIRNVAKYAARLGQSFGSSTETLSVSRREVEVIPDIEVESGSGVNYVFSDG 540
            IRK MGDFHSIRNVAKYAARLGQSFGSSTET SVSRREV+VIPDIEV+S +G+NYVFSDG
Sbjct: 481  IRKWMGDFHSIRNVAKYAARLGQSFGSSTETASVSRREVKVIPDIEVKSDAGINYVFSDG 540

Query: 541  IGKISASFARKVAQKCGIRHTPSAFQIRYAGFKGVISIDPTSSVKLSLRNSMLKYESADT 600
            IGKISASFAR+VA+KC IRHTPSAFQIRYAGFKGVIS+DPTS VKLSLRNSMLKYES DT
Sbjct: 541  IGKISASFAREVARKCHIRHTPSAFQIRYAGFKGVISVDPTSFVKLSLRNSMLKYESTDT 600

Query: 601  KLDVLSWSKYHPCFLNRQLITLLSTLGVQDHVFESKQKELIEQLDTIFTDPMKAQQALEL 660
            KLDVLSWS+YHPC+LNRQLITLLSTLGVQD +FESKQKELI+QLDTIF DP+KAQQALEL
Sbjct: 601  KLDVLSWSRYHPCYLNRQLITLLSTLGVQDDIFESKQKELIDQLDTIFMDPLKAQQALEL 660

Query: 661  MSPGENTNILKEMILCGYRPDSEPFLSMMLHTFRESKLLELRRKSRIFIPNGRAMMGCLD 720
            MSPGENTNILKE+I CGYRPDSEPFL MMLHTFRESKLLELRRKSRIFIPNGRAMMGCLD
Sbjct: 661  MSPGENTNILKEIISCGYRPDSEPFLYMMLHTFRESKLLELRRKSRIFIPNGRAMMGCLD 720

Query: 721  ETGNLDYGEVFVQCSAHQKLHNDHIIFRRSKSNRHFIVTGTVVVAKNPCLHPGDVRVLTA 780
            ETGNL+YGEVFVQCSAHQ+LHNDHIIF+RSKSN+HFIVTGTVVVAKNPCLHPGDVRVLTA
Sbjct: 721  ETGNLEYGEVFVQCSAHQQLHNDHIIFKRSKSNQHFIVTGTVVVAKNPCLHPGDVRVLTA 780

Query: 781  VDVPSLHHMVDCVVFPQRGSRPHPNECSGSDLDGDIYFVCWDPDLIPPQQVEPMDYTPVP 840
            VDVPSLHHMVDC+VFPQ+G RPHPNECSGSDLDGDIYFVCWDPDLIPPQQVEPMDYTPVP
Sbjct: 781  VDVPSLHHMVDCLVFPQKGPRPHPNECSGSDLDGDIYFVCWDPDLIPPQQVEPMDYTPVP 840

Query: 841  SKLLDHDVTMEEVQEYFANYMVNDSLGIIANAHTAFADREPEKAMSKTCIKLAKLFSIAV 900
            S+LLDHDVTMEEVQEYFANYMVNDSLGIIANAHTAFAD  PEKAMS+ CIKLAKLFSIAV
Sbjct: 841  SRLLDHDVTMEEVQEYFANYMVNDSLGIIANAHTAFADSRPEKAMSEPCIKLAKLFSIAV 900

Query: 901  DFPKTGVPALISADLRVQAYPDFMDKADKVSYKSDNVLGKLFRMLDNVGPKIKIRSLTFT 960
            DFPKTGVPALISADLRVQ YPDFMDK DK SYKS NVLGKLFRMLD++ P+I I+S+ FT
Sbjct: 901  DFPKTGVPALISADLRVQVYPDFMDKPDKQSYKSHNVLGKLFRMLDDIEPRISIKSVKFT 960

Query: 961  REEAQQAYDPDMEVEGFEEYLDDAFYHKNNYDMRLGNLMNYYKIKTEAELISGGSLTKSL 1020
            RE A+QAYDPDMEV+GFEEYLDDA YHKNNYDMRLGNLM YYKIKTEAELISG SLTKS 
Sbjct: 961  REIARQAYDPDMEVKGFEEYLDDALYHKNNYDMRLGNLMKYYKIKTEAELISGVSLTKSS 1020

Query: 1021 SFTKKNEAESITMAVKSLRKEARGWFNENAELHFGHDKNVYARASAWYFVTYHHSYWGWY 1080
            SFTKKNEAESI MAVKSLRKEARGWFNENA LHFGHD N YARASAWYFVTYH+SYWGWY
Sbjct: 1021 SFTKKNEAESIIMAVKSLRKEARGWFNENAGLHFGHDNNAYARASAWYFVTYHYSYWGWY 1080

Query: 1081 DDGKKHGHFLSFPWCVHDKLIRIKKRKMNARARYR 1116
             + K   HFLSFPWCV+DKLIRIKKRK+ ARAR+R
Sbjct: 1081 GE-KNESHFLSFPWCVYDKLIRIKKRKIGARARHR 1114

[Close]
BLAST of Spg028666 vs. ExPASy TrEMBL
Match: E9NWK7 (RNA-dependent RNA polymerase OS=Cucumis sativus OX=3659 GN=Csa_5G239640 PE=2 SV=1)

HSP 1 Score: 2007.6 bits (5200), Expect = 0.0e+00
Identity = 974/1115 (87.35%), Postives = 1035/1115 (92.83%), Query Frame = 0 

Query: 1    MGKTIQLYGFPPGVLQEAVKAFVERFTGEGTIDAIKIKRSKGRGRRVYATIQFTDDEGAK 60
            MGKTIQL+GFP GVLQE+VK FVE  TG GTIDAI  KRSKG GRRVYA IQFTD+EGAK
Sbjct: 1    MGKTIQLFGFPSGVLQESVKTFVEGITGTGTIDAINTKRSKGGGRRVYAIIQFTDEEGAK 60

Query: 61   LIISLANRRLCYDTSYLKAREWKQDILPDPLVFEYNFKGLRLHLGCQISKERFSVLWTES 120
             IIS A  RLCY TSYLKARE K DILPDPLVF+YNFK LRLHLGCQISKE FSVLWTES
Sbjct: 61   SIISKATERLCYGTSYLKAREMKHDILPDPLVFDYNFKALRLHLGCQISKESFSVLWTES 120

Query: 121  TVSVDFGFERRELKFFISHPHVDYMLVLRYENIWQVELHKPQGQSVDYLLIQLFGAPRIY 180
             VSVDFGFE R+L FFIS+P VDYMLVLRYENIWQVELHKP GQSVDYLLIQLFGAPRIY
Sbjct: 121  NVSVDFGFELRKLYFFISYPRVDYMLVLRYENIWQVELHKPHGQSVDYLLIQLFGAPRIY 180

Query: 181  ERDTKSYRPITEDPFFTFSEEIDTKWFRATDFTPSCCIGQSAALCLEIPYGRQLPNFHDN 240
            ERD +S+  ITEDPF  FS EIDT+WFRATDFTPSC IGQSAALCLEIPYGRQLPNFHD 
Sbjct: 181  ERDARSFGLITEDPFLNFSTEIDTQWFRATDFTPSCSIGQSAALCLEIPYGRQLPNFHDK 240

Query: 241  FAYYKEIKGKLTLVSGSTYSSNVNLVPVVRPPLNINLPYAILFKINLLVQQGCLPGPALD 300
            FAY+KEIKGK TLVSGSTYSSNVNLVPVV PP  INLPY ILFKINLLVQQGCLPGPALD
Sbjct: 241  FAYFKEIKGKFTLVSGSTYSSNVNLVPVVTPPRTINLPYTILFKINLLVQQGCLPGPALD 300

Query: 301  ISFYQMVDPQIHNIAFIDHALKKLYHLKECCYNPSKWLDDEYRKYFRLKNPPLPPIFTLN 360
            ISFYQMVD QI+N A IDHALKKL HLKECCYNPSKWLD+EYRKYF+LKNPP PPI TLN
Sbjct: 301  ISFYQMVDSQIYNTAVIDHALKKLLHLKECCYNPSKWLDEEYRKYFKLKNPPQPPILTLN 360

Query: 361  EGLVYVHRVQVTPCKVYFCGPEVNVSNRVLRGYPKYLDNFLRVSFVDEELDKMYSTELSP 420
            EGLVYVHRVQVTPCKVYFCGPEVN+SNRVLR YP Y+DNFLRVSFVDEEL KMYSTELSP
Sbjct: 361  EGLVYVHRVQVTPCKVYFCGPEVNISNRVLRRYPDYIDNFLRVSFVDEELGKMYSTELSP 420

Query: 421  RESSSLEDGKTKIFKRILSVLKDGITIGDKKFEFLAYSSSQLRENAVWMFAPRDGLTAAK 480
            R SSSLEDGKTKIFKRILSVL+DGITIGDKKFEFLAYSSSQLRENA WMFAP++ LTAAK
Sbjct: 421  RASSSLEDGKTKIFKRILSVLRDGITIGDKKFEFLAYSSSQLRENAAWMFAPKNELTAAK 480

Query: 481  IRKGMGDFHSIRNVAKYAARLGQSFGSSTETLSVSRREVEVIPDIEVESGSGVNYVFSDG 540
            IR+ MGDFH+IRNVAKYAARLGQSFGSSTETLSVSRREV+VIPDIEVESGSGVNYVFSDG
Sbjct: 481  IRQWMGDFHNIRNVAKYAARLGQSFGSSTETLSVSRREVKVIPDIEVESGSGVNYVFSDG 540

Query: 541  IGKISASFARKVAQKCGIRHTPSAFQIRYAGFKGVISIDPTSSVKLSLRNSMLKYESADT 600
            IGKI+ASFARKVA+KCGIRHTPSAFQIRYAGFKGVIS+DPTSSVKLSLRNSMLKYES DT
Sbjct: 541  IGKIAASFARKVAKKCGIRHTPSAFQIRYAGFKGVISVDPTSSVKLSLRNSMLKYESTDT 600

Query: 601  KLDVLSWSKYHPCFLNRQLITLLSTLGVQDHVFESKQKELIEQLDTIFTDPMKAQQALEL 660
            KLDVLSWSKYHPCFLNRQLITLLSTLGVQDHVFESKQ+ELI++LDTIF+DP+KAQQALEL
Sbjct: 601  KLDVLSWSKYHPCFLNRQLITLLSTLGVQDHVFESKQQELIDELDTIFSDPLKAQQALEL 660

Query: 661  MSPGENTNILKEMILCGYRPDSEPFLSMMLHTFRESKLLELRRKSRIFIPNGRAMMGCLD 720
            MSPGENT ILKEM+LCGY+PDSEPFL MMLHTFRESKL+ELR KSRIFIPNGRAMMGCLD
Sbjct: 661  MSPGENTKILKEMMLCGYKPDSEPFLRMMLHTFRESKLMELRMKSRIFIPNGRAMMGCLD 720

Query: 721  ETGNLDYGEVFVQCSAHQKLHNDHIIFRRSKSNRHFIVTGTVVVAKNPCLHPGDVRVLTA 780
            ET NL+YGEVFVQCSAHQ+LH+D +IF+R KSNRHFIVTGTVVVAKNPCLHPGDVRVLTA
Sbjct: 721  ETRNLEYGEVFVQCSAHQQLHDDRVIFKRIKSNRHFIVTGTVVVAKNPCLHPGDVRVLTA 780

Query: 781  VDVPSLHHMVDCVVFPQRGSRPHPNECSGSDLDGDIYFVCWDPDLIPPQQVEPMDYTPVP 840
            VDVPSLHHM+DCVVFPQ+GSRPHPNECSGSDLDGDIYFVCWDPDLIPPQQVEPMDYTPVP
Sbjct: 781  VDVPSLHHMIDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWDPDLIPPQQVEPMDYTPVP 840

Query: 841  SKLLDHDVTMEEVQEYFANYMVNDSLGIIANAHTAFADREPEKAMSKTCIKLAKLFSIAV 900
            S++LDHDVTMEEVQEYFANYMVNDSLGIIANAHTAFAD+EP+KAMS  CI+LAKLFSIAV
Sbjct: 841  SQVLDHDVTMEEVQEYFANYMVNDSLGIIANAHTAFADKEPKKAMSNPCIQLAKLFSIAV 900

Query: 901  DFPKTGVPALISADLRVQAYPDFMDKADKVSYKSDNVLGKLFRMLDNVGPKIK-IRSLTF 960
            DFPKTGVPALI A+LRV+ YPDFMDKADKV+Y+S+NVLGKLFRMLD++GP IK IRS  +
Sbjct: 901  DFPKTGVPALIPANLRVKEYPDFMDKADKVTYESENVLGKLFRMLDSIGPNIKNIRSFNY 960

Query: 961  TREEAQQAYDPDMEVEGFEEYLDDAFYHKNNYDMRLGNLMNYYKIKTEAELISGGSLTKS 1020
            T E A+Q YDPDMEVEGFEEYLDDA YHKNNYDMRLGNLM+Y+KIKTEAELISGGSLT S
Sbjct: 961  TPEMARQDYDPDMEVEGFEEYLDDAIYHKNNYDMRLGNLMHYHKIKTEAELISGGSLTSS 1020

Query: 1021 LSFTKKNEAESITMAVKSLRKEARGWFNENAELHFGHDKNVYARASAWYFVTYHHSYWGW 1080
            LSFT KNEAESI +AVKSLRKEARGWFNE A+LH+GH  NVYARASAWYFVTYHH+YWGW
Sbjct: 1021 LSFTMKNEAESIILAVKSLRKEARGWFNEKADLHYGHHTNVYARASAWYFVTYHHTYWGW 1080

Query: 1081 YDDGKKHGHFLSFPWCVHDKLIRIKKRKMNARARY 1115
             D  K HGHFLSFPWCV+DKLIRIK RK+N RARY
Sbjct: 1081 SDGRKNHGHFLSFPWCVYDKLIRIKHRKINCRARY 1115

[Close]
BLAST of Spg028666 vs. ExPASy TrEMBL
Match: A0A6J1K2Q9 (RNA-dependent RNA polymerase OS=Cucurbita maxima OX=3661 GN=LOC111490531 PE=3 SV=1)

HSP 1 Score: 1998.8 bits (5177), Expect = 0.0e+00
Identity = 973/1115 (87.26%), Postives = 1037/1115 (93.00%), Query Frame = 0 

Query: 1    MGKTIQLYGFPPGVLQEAVKAFVERFTGEGTIDAIKIKRSKGRGRRVYATIQFTDDEGAK 60
            MGKTIQLYGFP GVLQE+VKAFVERFTGEG+IDAI +KRS+GRG+R+YA IQF DD GAK
Sbjct: 1    MGKTIQLYGFPSGVLQESVKAFVERFTGEGSIDAINVKRSRGRGKRLYAIIQFIDDVGAK 60

Query: 61   LIISLANRRLCYDTSYLKAREWKQDILPDPLVFEYNFKGLRLHLGCQISKERFSVLWTES 120
            LIISLAN  L Y TS LKAREWKQDIL DPLVFEYNFKGL LHLGCQIS+E F VLWTES
Sbjct: 61   LIISLANASLRYGTSSLKAREWKQDILQDPLVFEYNFKGLELHLGCQISREEFFVLWTES 120

Query: 121  TVSVDFGFERRELKFFISHPHVDYMLVLRYENIWQVELHKPQGQSVDYLLIQLFGAPRIY 180
             VSV+F FERR+LKFFISHP VDYMLVLRYENIWQVELHKP GQS+DYLLIQL GAPRIY
Sbjct: 121  NVSVNFEFERRDLKFFISHPLVDYMLVLRYENIWQVELHKPPGQSIDYLLIQLVGAPRIY 180

Query: 181  ERDTKSYRPITEDPFFTFSEEIDTKWFRATDFTPSCCIGQSAALCLEIPYGRQLPNFHDN 240
            ERDTK +  I+EDPF +FS+E+DT+WFRATDFTPSCCIGQS ALCLEIPYGRQLPNFHD 
Sbjct: 181  ERDTKLFGHISEDPFLSFSKEMDTEWFRATDFTPSCCIGQSGALCLEIPYGRQLPNFHDK 240

Query: 241  FAYYKEIKGKLTLVSGSTYSSNVNLVPVVRPPLNINLPYAILFKINLLVQQGCLPGPALD 300
            FAY+KEIKGK TL +GSTYSSNVNLVPVVRPPL+I+LPYAILFKINLLVQQGCLPGPALD
Sbjct: 241  FAYFKEIKGKFTLATGSTYSSNVNLVPVVRPPLSIHLPYAILFKINLLVQQGCLPGPALD 300

Query: 301  ISFYQMVDPQIHNIAFIDHALKKLYHLKECCYNPSKWLDDEYRKYFRLKNPPLPPIFTLN 360
            ISFY+MVDPQIHNIAFID AL+KLY LKECCYNPSKWL +EYRKY +L NPP PP  +L+
Sbjct: 301  ISFYEMVDPQIHNIAFIDRALRKLYDLKECCYNPSKWLGEEYRKYSKLTNPPQPPNLSLD 360

Query: 361  EGLVYVHRVQVTPCKVYFCGPEVNVSNRVLRGYPKYLDNFLRVSFVDEELDKMYSTELSP 420
            EGLVYVHRVQVTPC+VYFCGPEVNVSNRVLR YP+YLDNFLRVSFVDEELD++YSTELSP
Sbjct: 361  EGLVYVHRVQVTPCRVYFCGPEVNVSNRVLRRYPEYLDNFLRVSFVDEELDRLYSTELSP 420

Query: 421  RESSSLEDGKTKIFKRILSVLKDGITIGDKKFEFLAYSSSQLRENAVWMFAPRDGLTAAK 480
            RESSSL DGKTKIFKRILSVLKDGITIGDKKFEFLAYSSSQLRENAVWMFAPRDG+TAAK
Sbjct: 421  RESSSLGDGKTKIFKRILSVLKDGITIGDKKFEFLAYSSSQLRENAVWMFAPRDGITAAK 480

Query: 481  IRKGMGDFHSIRNVAKYAARLGQSFGSSTETLSVSRREVEVIPDIEVESGSGVNYVFSDG 540
            IRK MGDFHSIRNVAKYAARLGQSFGSSTET SVSRREVEVIPDIEVES +G+NYVFSDG
Sbjct: 481  IRKWMGDFHSIRNVAKYAARLGQSFGSSTETASVSRREVEVIPDIEVESDAGINYVFSDG 540

Query: 541  IGKISASFARKVAQKCGIRHTPSAFQIRYAGFKGVISIDPTSSVKLSLRNSMLKYESADT 600
            IGKISASFAR+VA+KC IRHTPSAFQIRYAGFKGVIS+DPTS VKLSLRNSMLKYES D 
Sbjct: 541  IGKISASFAREVARKCRIRHTPSAFQIRYAGFKGVISVDPTSFVKLSLRNSMLKYESTDM 600

Query: 601  KLDVLSWSKYHPCFLNRQLITLLSTLGVQDHVFESKQKELIEQLDTIFTDPMKAQQALEL 660
            KLDVLSWS+YHPC+LNRQLITLLSTLGVQD +FESKQKELI+QLDTIF +P+KAQQALEL
Sbjct: 601  KLDVLSWSRYHPCYLNRQLITLLSTLGVQDDIFESKQKELIDQLDTIFMNPLKAQQALEL 660

Query: 661  MSPGENTNILKEMILCGYRPDSEPFLSMMLHTFRESKLLELRRKSRIFIPNGRAMMGCLD 720
            MSPGENTNILKE+I CGYRPDSEPFL MMLHTFRESKLLELRRKSRIFIPNGRAMMGCLD
Sbjct: 661  MSPGENTNILKEIISCGYRPDSEPFLYMMLHTFRESKLLELRRKSRIFIPNGRAMMGCLD 720

Query: 721  ETGNLDYGEVFVQCSAHQKLHNDHIIFRRSKSNRHFIVTGTVVVAKNPCLHPGDVRVLTA 780
            ETGNL+YGEVFVQCSAHQ+LHNDHIIF+RSKSN+HFIVTGTVVVAKNPCLHPGDVRVLTA
Sbjct: 721  ETGNLEYGEVFVQCSAHQQLHNDHIIFKRSKSNQHFIVTGTVVVAKNPCLHPGDVRVLTA 780

Query: 781  VDVPSLHHMVDCVVFPQRGSRPHPNECSGSDLDGDIYFVCWDPDLIPPQQVEPMDYTPVP 840
            VDVP+LHHMVDC+VFPQ+G RPHPNECSGSDLDGDIYFVCWDPDLIP QQVEPMDYTPV 
Sbjct: 781  VDVPALHHMVDCLVFPQKGPRPHPNECSGSDLDGDIYFVCWDPDLIPHQQVEPMDYTPVL 840

Query: 841  SKLLDHDVTMEEVQEYFANYMVNDSLGIIANAHTAFADREPEKAMSKTCIKLAKLFSIAV 900
            S+LLDHDVTMEEVQEYFANYMVNDSLGIIANAHTAFAD  PEKAMS+ CIKLAKLFSIAV
Sbjct: 841  SRLLDHDVTMEEVQEYFANYMVNDSLGIIANAHTAFADSWPEKAMSEPCIKLAKLFSIAV 900

Query: 901  DFPKTGVPALISADLRVQAYPDFMDKADKVSYKSDNVLGKLFRMLDNVGPKIKIRSLTFT 960
            DFPKTGVPALISADLRVQ YPDFMDK DK  YKS NVLGKLFRMLD++ P+I I+S+ FT
Sbjct: 901  DFPKTGVPALISADLRVQVYPDFMDKPDKQRYKSHNVLGKLFRMLDDIEPRISIKSVKFT 960

Query: 961  REEAQQAYDPDMEVEGFEEYLDDAFYHKNNYDMRLGNLMNYYKIKTEAELISGGSLTKSL 1020
            RE A+QAYDPDMEVEGFEEYLDDA YHKNNYDMRLGNLM YYKIKTEAELISG SLTKS 
Sbjct: 961  REIARQAYDPDMEVEGFEEYLDDALYHKNNYDMRLGNLMKYYKIKTEAELISGVSLTKSS 1020

Query: 1021 SFTKKNEAESITMAVKSLRKEARGWFNENAELHFGHDKNVYARASAWYFVTYHHSYWGWY 1080
            SFTKKNEAESI MAVKSLRKEARGWFNENA LHFGHD N YARASAWYFVTYH+SYWGW+
Sbjct: 1021 SFTKKNEAESIIMAVKSLRKEARGWFNENAGLHFGHDNNAYARASAWYFVTYHYSYWGWF 1080

Query: 1081 DDGKKHGHFLSFPWCVHDKLIRIKKRKMNARARYR 1116
             + K   HFLSFPWCV+DKLIRIKKRK+  RAR+R
Sbjct: 1081 GE-KNESHFLSFPWCVYDKLIRIKKRKIGPRARHR 1114

[Close]
BLAST of Spg028666 vs. ExPASy TrEMBL
Match: H3K3Y9 (RNA-dependent RNA polymerase OS=Cucumis sativus OX=3659 GN=RDR1 PE=2 SV=1)

HSP 1 Score: 1995.3 bits (5168), Expect = 0.0e+00
Identity = 969/1115 (86.91%), Postives = 1031/1115 (92.47%), Query Frame = 0 

Query: 1    MGKTIQLYGFPPGVLQEAVKAFVERFTGEGTIDAIKIKRSKGRGRRVYATIQFTDDEGAK 60
            MGKTIQL+GFP GVLQE+VK FVE  TG GTIDAI  KRSKG GRRVYA IQFTD+EGAK
Sbjct: 1    MGKTIQLFGFPSGVLQESVKTFVEGITGTGTIDAINTKRSKGGGRRVYAIIQFTDEEGAK 60

Query: 61   LIISLANRRLCYDTSYLKAREWKQDILPDPLVFEYNFKGLRLHLGCQISKERFSVLWTES 120
             IIS A  RLCY TSYLKARE K DILPDPLVF+YNFK LRLHLGCQISKE FSVLWTES
Sbjct: 61   SIISKATERLCYGTSYLKAREMKHDILPDPLVFDYNFKALRLHLGCQISKESFSVLWTES 120

Query: 121  TVSVDFGFERRELKFFISHPHVDYMLVLRYENIWQVELHKPQGQSVDYLLIQLFGAPRIY 180
             VSVDFGF+ R+L FFIS+P VDYMLVLRYENIWQVELHKP GQSVDYLLIQLFGAPRIY
Sbjct: 121  NVSVDFGFDVRKLYFFISYPRVDYMLVLRYENIWQVELHKPHGQSVDYLLIQLFGAPRIY 180

Query: 181  ERDTKSYRPITEDPFFTFSEEIDTKWFRATDFTPSCCIGQSAALCLEIPYGRQLPNFHDN 240
            ERD +S+  ITEDPF  FS EIDT+WFRATDFTPSC IGQSAALCLEI YGRQLPNFHD 
Sbjct: 181  ERDARSFGLITEDPFLNFSTEIDTQWFRATDFTPSCSIGQSAALCLEILYGRQLPNFHDK 240

Query: 241  FAYYKEIKGKLTLVSGSTYSSNVNLVPVVRPPLNINLPYAILFKINLLVQQGCLPGPALD 300
            FAY+KEIKGK TLVSGSTYSSNVNLVPVV PP  INLPY ILFKINLLVQQGCLPGPALD
Sbjct: 241  FAYFKEIKGKFTLVSGSTYSSNVNLVPVVTPPRTINLPYTILFKINLLVQQGCLPGPALD 300

Query: 301  ISFYQMVDPQIHNIAFIDHALKKLYHLKECCYNPSKWLDDEYRKYFRLKNPPLPPIFTLN 360
            ISFYQMVD QI+N A IDHALKKL HLKECCYNPSKWLD+EYRKYF+LKNPP PPI TLN
Sbjct: 301  ISFYQMVDSQIYNTAVIDHALKKLLHLKECCYNPSKWLDEEYRKYFKLKNPPQPPILTLN 360

Query: 361  EGLVYVHRVQVTPCKVYFCGPEVNVSNRVLRGYPKYLDNFLRVSFVDEELDKMYSTELSP 420
            EGLVYVHRVQVTPCKVYFCGPEVN+SNRVLR YP Y+DNFLRVSFVDEEL KMYSTELSP
Sbjct: 361  EGLVYVHRVQVTPCKVYFCGPEVNISNRVLRRYPDYIDNFLRVSFVDEELGKMYSTELSP 420

Query: 421  RESSSLEDGKTKIFKRILSVLKDGITIGDKKFEFLAYSSSQLRENAVWMFAPRDGLTAAK 480
            R SSSLEDGKTKI KRILSVL+DGITIGDKKFEFLAYSSSQLRENA WMFAP++ LTAAK
Sbjct: 421  RASSSLEDGKTKILKRILSVLRDGITIGDKKFEFLAYSSSQLRENAAWMFAPKNELTAAK 480

Query: 481  IRKGMGDFHSIRNVAKYAARLGQSFGSSTETLSVSRREVEVIPDIEVESGSGVNYVFSDG 540
            IR+ MGDFH+IRNVAKYAARLGQ FGSSTETLSVSRREV+VIPDIEVESGSGVNYVFSDG
Sbjct: 481  IRQWMGDFHNIRNVAKYAARLGQPFGSSTETLSVSRREVKVIPDIEVESGSGVNYVFSDG 540

Query: 541  IGKISASFARKVAQKCGIRHTPSAFQIRYAGFKGVISIDPTSSVKLSLRNSMLKYESADT 600
            IGKI+ASFARKVA+KCGIRHTPSAFQIRYAGFKGVIS+DPTSSVKLSLRNSMLKYES DT
Sbjct: 541  IGKIAASFARKVAKKCGIRHTPSAFQIRYAGFKGVISVDPTSSVKLSLRNSMLKYESTDT 600

Query: 601  KLDVLSWSKYHPCFLNRQLITLLSTLGVQDHVFESKQKELIEQLDTIFTDPMKAQQALEL 660
            KLDVLSWSKYHPCFLNRQLITLLSTLGVQDHVFESKQ+ELI++LDTIF+DP+KAQQALEL
Sbjct: 601  KLDVLSWSKYHPCFLNRQLITLLSTLGVQDHVFESKQQELIDELDTIFSDPLKAQQALEL 660

Query: 661  MSPGENTNILKEMILCGYRPDSEPFLSMMLHTFRESKLLELRRKSRIFIPNGRAMMGCLD 720
            MSPGENT ILKEM+LCGY+PDSEPFL MMLHTFRESKL+ELR KSRIFIPNGRAMMGCLD
Sbjct: 661  MSPGENTKILKEMMLCGYKPDSEPFLRMMLHTFRESKLMELRMKSRIFIPNGRAMMGCLD 720

Query: 721  ETGNLDYGEVFVQCSAHQKLHNDHIIFRRSKSNRHFIVTGTVVVAKNPCLHPGDVRVLTA 780
            ET NL+YGEVF QCSAHQ+LH+D +IF+R KSNRHFIVTGTVVVAKNPCLHPGDVRVLTA
Sbjct: 721  ETRNLEYGEVFWQCSAHQQLHDDRVIFKRIKSNRHFIVTGTVVVAKNPCLHPGDVRVLTA 780

Query: 781  VDVPSLHHMVDCVVFPQRGSRPHPNECSGSDLDGDIYFVCWDPDLIPPQQVEPMDYTPVP 840
            VDVPSLHHM+DCVVFPQ+GSRPHPNECSGSDLDGDIYFVCWDPDLIPPQQVEPMDYTPVP
Sbjct: 781  VDVPSLHHMIDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWDPDLIPPQQVEPMDYTPVP 840

Query: 841  SKLLDHDVTMEEVQEYFANYMVNDSLGIIANAHTAFADREPEKAMSKTCIKLAKLFSIAV 900
            S++LDHDVTMEEVQEYFANYMVNDSLGIIANAHTAFAD+EP+KAMS  CI+LAKLFSIAV
Sbjct: 841  SQVLDHDVTMEEVQEYFANYMVNDSLGIIANAHTAFADKEPKKAMSNPCIQLAKLFSIAV 900

Query: 901  DFPKTGVPALISADLRVQAYPDFMDKADKVSYKSDNVLGKLFRMLDNVGPKIK-IRSLTF 960
            DFPKTGVPALI A+LRV+ YPDFMDKADKV+Y+S+NVLGKLFRMLD++GP IK IRS  +
Sbjct: 901  DFPKTGVPALIPANLRVKEYPDFMDKADKVTYESENVLGKLFRMLDSIGPNIKNIRSFNY 960

Query: 961  TREEAQQAYDPDMEVEGFEEYLDDAFYHKNNYDMRLGNLMNYYKIKTEAELISGGSLTKS 1020
            T E A+Q YDPDMEVEGFEEYLDDA YHKNNYDMRLGNLM+Y+KIKTEAELISGGSLT S
Sbjct: 961  TPEMARQDYDPDMEVEGFEEYLDDAIYHKNNYDMRLGNLMHYHKIKTEAELISGGSLTSS 1020

Query: 1021 LSFTKKNEAESITMAVKSLRKEARGWFNENAELHFGHDKNVYARASAWYFVTYHHSYWGW 1080
            LSFT KNEAESI +AVKSLRKEARGWFNE A+LH+GH  NVYARASAWYFVTYHH+YWGW
Sbjct: 1021 LSFTMKNEAESIILAVKSLRKEARGWFNEKADLHYGHHTNVYARASAWYFVTYHHTYWGW 1080

Query: 1081 YDDGKKHGHFLSFPWCVHDKLIRIKKRKMNARARY 1115
             D  K HGHFLSFPWCV+DKLIRIK RK+N RARY
Sbjct: 1081 SDGRKNHGHFLSFPWCVYDKLIRIKHRKINCRARY 1115

[Close]
BLAST of Spg028666 vs. ExPASy TrEMBL
Match: A0A0S1YCZ7 (RNA-dependent RNA polymerase OS=Cucumis sativus OX=3659 GN=RDR1b PE=2 SV=1)

HSP 1 Score: 1994.2 bits (5165), Expect = 0.0e+00
Identity = 970/1115 (87.00%), Postives = 1031/1115 (92.47%), Query Frame = 0 

Query: 1    MGKTIQLYGFPPGVLQEAVKAFVERFTGEGTIDAIKIKRSKGRGRRVYATIQFTDDEGAK 60
            MGKTIQL+GFP GVLQE+VK FVE  TG GTIDAI  KRSKG GRRVYA IQFTD+EGAK
Sbjct: 1    MGKTIQLFGFPSGVLQESVKTFVEGITGTGTIDAINTKRSKGGGRRVYAIIQFTDEEGAK 60

Query: 61   LIISLANRRLCYDTSYLKAREWKQDILPDPLVFEYNFKGLRLHLGCQISKERFSVLWTES 120
             IIS A  RLCY TSYLKARE K DILPDPLVF+YNFK LRLHLGCQISKE FSVLWTES
Sbjct: 61   SIISKATERLCYGTSYLKAREMKHDILPDPLVFDYNFKALRLHLGCQISKESFSVLWTES 120

Query: 121  TVSVDFGFERRELKFFISHPHVDYMLVLRYENIWQVELHKPQGQSVDYLLIQLFGAPRIY 180
             VSVDFGFE R+L FFIS+P VDYMLVLRYENIWQVELHKP GQSVDYLLIQLFGAPRIY
Sbjct: 121  NVSVDFGFELRKLYFFISYPRVDYMLVLRYENIWQVELHKPHGQSVDYLLIQLFGAPRIY 180

Query: 181  ERDTKSYRPITEDPFFTFSEEIDTKWFRATDFTPSCCIGQSAALCLEIPYGRQLPNFHDN 240
            ERD +S+  ITEDPF  FS EIDT+WFRATDFTPSC IGQSAALCLEIPYGRQLPNFHD 
Sbjct: 181  ERDARSFGLITEDPFLNFSTEIDTQWFRATDFTPSCSIGQSAALCLEIPYGRQLPNFHDK 240

Query: 241  FAYYKEIKGKLTLVSGSTYSSNVNLVPVVRPPLNINLPYAILFKINLLVQQGCLPGPALD 300
            FAY+KEIKGK TLVSGSTYSSNVNLVPVV PP  INLPY ILFKINLLVQQGCLPGPALD
Sbjct: 241  FAYFKEIKGKFTLVSGSTYSSNVNLVPVVTPPRTINLPYTILFKINLLVQQGCLPGPALD 300

Query: 301  ISFYQMVDPQIHNIAFIDHALKKLYHLKECCYNPSKWLDDEYRKYFRLKNPPLPPIFTLN 360
            ISFYQMVD QI+N A IDHALKKL HLKECCYNPS WLD+EYRKYF+LKNPP PPI TLN
Sbjct: 301  ISFYQMVDSQIYNTAVIDHALKKLLHLKECCYNPSIWLDEEYRKYFKLKNPPQPPILTLN 360

Query: 361  EGLVYVHRVQVTPCKVYFCGPEVNVSNRVLRGYPKYLDNFLRVSFVDEELDKMYSTELSP 420
            EGLVYVHRVQVTPCKVYFCGPEVN+SNRVLR  P Y+DNFLRVSFVDEEL KMYSTELSP
Sbjct: 361  EGLVYVHRVQVTPCKVYFCGPEVNISNRVLRRCPDYIDNFLRVSFVDEELGKMYSTELSP 420

Query: 421  RESSSLEDGKTKIFKRILSVLKDGITIGDKKFEFLAYSSSQLRENAVWMFAPRDGLTAAK 480
            R SSSLEDGKTKIFKRILSVL+DGITIGDKKFEFLAYSSSQLRENA WMFAP++ LTAAK
Sbjct: 421  RASSSLEDGKTKIFKRILSVLRDGITIGDKKFEFLAYSSSQLRENAAWMFAPKNELTAAK 480

Query: 481  IRKGMGDFHSIRNVAKYAARLGQSFGSSTETLSVSRREVEVIPDIEVESGSGVNYVFSDG 540
            IR+ MGDFH+IRNVAKYAARLGQSFGSSTETLSVSRREV+VIPDIEVESGSGVNYVFSDG
Sbjct: 481  IRQWMGDFHNIRNVAKYAARLGQSFGSSTETLSVSRREVKVIPDIEVESGSGVNYVFSDG 540

Query: 541  IGKISASFARKVAQKCGIRHTPSAFQIRYAGFKGVISIDPTSSVKLSLRNSMLKYESADT 600
            IGKI+ASFARKVA+KCGIRHTPSAFQIRYAGFKGVIS+DPTSSVKLSLRNSMLKYES DT
Sbjct: 541  IGKIAASFARKVAKKCGIRHTPSAFQIRYAGFKGVISVDPTSSVKLSLRNSMLKYESTDT 600

Query: 601  KLDVLSWSKYHPCFLNRQLITLLSTLGVQDHVFESKQKELIEQLDTIFTDPMKAQQALEL 660
            KLDVLSWSKYHPCFLNRQLIT LSTLGVQDHVFESKQ+ELI++LDTIF+DP+KAQQALEL
Sbjct: 601  KLDVLSWSKYHPCFLNRQLITFLSTLGVQDHVFESKQQELIDELDTIFSDPLKAQQALEL 660

Query: 661  MSPGENTNILKEMILCGYRPDSEPFLSMMLHTFRESKLLELRRKSRIFIPNGRAMMGCLD 720
            MSPGENT ILKEM+LCGY+PDSEPFL MMLHTFRESKL+ELR KSRIFIPNGRAMMGCLD
Sbjct: 661  MSPGENTKILKEMMLCGYKPDSEPFLRMMLHTFRESKLMELRMKSRIFIPNGRAMMGCLD 720

Query: 721  ETGNLDYGEVFVQCSAHQKLHNDHIIFRRSKSNRHFIVTGTVVVAKNPCLHPGDVRVLTA 780
            ET NL+YGEVFVQCSAHQ+LH+D +IF+R KSNRHFIVTGTVVVAKNPCLHPGDVRVLTA
Sbjct: 721  ETRNLEYGEVFVQCSAHQQLHDDRVIFKRIKSNRHFIVTGTVVVAKNPCLHPGDVRVLTA 780

Query: 781  VDVPSLHHMVDCVVFPQRGSRPHPNECSGSDLDGDIYFVCWDPDLIPPQQVEPMDYTPVP 840
            VDVPSLHHM+DCVVFPQ+GSRPHPNECSGSDLDGDIYFVCWDPDLIPPQQVEPMDYTPVP
Sbjct: 781  VDVPSLHHMIDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWDPDLIPPQQVEPMDYTPVP 840

Query: 841  SKLLDHDVTMEEVQEYFANYMVNDSLGIIANAHTAFADREPEKAMSKTCIKLAKLFSIAV 900
            S++LDHDVTMEEVQEYFANYMVNDSLGIIANAHTAFAD+EP+KAMS  CI+LAKLFSIAV
Sbjct: 841  SQVLDHDVTMEEVQEYFANYMVNDSLGIIANAHTAFADKEPKKAMSNPCIQLAKLFSIAV 900

Query: 901  DFPKTGVPALISADLRVQAYPDFMDKADKVSYKSDNVLGKLFRMLDNVGPKIK-IRSLTF 960
            DFPKTGVPALI A+LRV+ YPDFMDKADKV+Y+S+NVLGKLFRMLD++GP IK IRS  +
Sbjct: 901  DFPKTGVPALIPANLRVKEYPDFMDKADKVTYESENVLGKLFRMLDSIGPNIKNIRSFNY 960

Query: 961  TREEAQQAYDPDMEVEGFEEYLDDAFYHKNNYDMRLGNLMNYYKIKTEAELISGGSLTKS 1020
            T E A+Q YDPDMEVEGFEEYLDDA YHKNNYDMRLGNLM+Y+KIKTEAELISGGSLT S
Sbjct: 961  TPEMARQDYDPDMEVEGFEEYLDDAIYHKNNYDMRLGNLMHYHKIKTEAELISGGSLTSS 1020

Query: 1021 LSFTKKNEAESITMAVKSLRKEARGWFNENAELHFGHDKNVYARASAWYFVTYHHSYWGW 1080
            LSFT KNEAESI +AVKSLRKEARGWFNE A+LH+GH  NVYARASAWYFVTYHH+YWGW
Sbjct: 1021 LSFTMKNEAESIILAVKSLRKEARGWFNEKADLHYGHHTNVYARASAWYFVTYHHTYWGW 1080

Query: 1081 YDDGKKHGHFLSFPWCVHDKLIRIKKRKMNARARY 1115
             D  K HGHFLSFP CV+DKLIRIK RK+N RARY
Sbjct: 1081 SDGRKNHGHFLSFPRCVYDKLIRIKHRKINCRARY 1115

[Close]
BLAST of Spg028666 vs. TAIR 10
Match: AT1G14790.1 (RNA-dependent RNA polymerase 1 )

HSP 1 Score: 1355.5 bits (3507), Expect = 0.0e+00
Identity = 680/1117 (60.88%), Postives = 841/1117 (75.29%), Query Frame = 0 

Query: 1    MGKTIQLYGFPPGVLQEAVKAFVERFTGEGTIDAIKIKRSKGRGRRVYATIQFTDDEGAK 60
            MGKTIQ++GFP GV  E VK F+ER TG GT+ AIK+++ K  G RVYA +QFT +   +
Sbjct: 1    MGKTIQVFGFPNGVSAEEVKKFLERLTGSGTVYAIKVRQPKKGGPRVYAIVQFTSERHTR 60

Query: 61   LIISLANRRLCYDTSYLKAREWKQDILPDPLVFEYNFKGLRLHLGCQISKERFSVLWTES 120
            LII+ A  RL Y  SYLKA E +QDI+P P    +   GL++  GCQ+S ++F  LW+  
Sbjct: 61   LIITAAAERLYYGRSYLKAFEVEQDIVPKPRASLHTISGLKMFFGCQVSTKKFLTLWSAQ 120

Query: 121  TVSVDFGFERRELKFFISHPHVDYMLVLRYENIWQVELHKPQGQSVDYLLIQLFGAPRIY 180
             V V FG   R+L F  S    DY L L YENIWQ++LH PQG+S  +L+IQ+ GAP+I+
Sbjct: 121  DVCVSFGIGMRKLHFSFSWYQKDYRLELSYENIWQIDLHSPQGRSSKFLVIQVIGAPKIF 180

Query: 181  ERDTKSYRPITEDPFFTFSEEIDTKWFRATDFTPSCCIGQSAALCLEIPYGRQLPNFHDN 240
            E++ +    +     F +S+  D +W R TDFT S CIGQS A CLE+P    +P+F +N
Sbjct: 181  EKEDQPINLLFGIMDF-YSDGSDEQWIRTTDFTSSSCIGQSTAFCLELPVHLNVPDFREN 240

Query: 241  FAYYKEIKGKLTLV-SGSTYSSNVN-LVPVVRPPLNINLPYAILFKINLLVQQGCLPGPA 300
            FA Y E +    L+ SGS+YSSN N LVPVV PP   +LP+ ILFK+N LVQ  CL GPA
Sbjct: 241  FANYAEHRASSFLIESGSSYSSNANTLVPVVDPPPGFSLPFEILFKLNTLVQNACLSGPA 300

Query: 301  LDISFYQMVDPQIHNIAFIDHALKKLYHLKECCYNPSKWLDDEYRKYFRLKNPPLPPIFT 360
            LD+ FY++++ + ++ A IDH L+KL+HL ECCY P+ WL DEY+K+      PL P  +
Sbjct: 301  LDLDFYRLLNQKKYDRALIDHCLEKLFHLGECCYEPAHWLRDEYKKWISKGKLPLSPTIS 360

Query: 361  LNEGLVYVHRVQVTPCKVYFCGPEVNVSNRVLRGYPKYLDNFLRVSFVDEELDKMYSTEL 420
            L++GLVY++RVQVTP +VYF GPEVNVSNRVLR Y KY++NFLRVSFVDE+L+K+ S +L
Sbjct: 361  LDDGLVYMYRVQVTPARVYFSGPEVNVSNRVLRHYSKYINNFLRVSFVDEDLEKVRSMDL 420

Query: 421  SPRESSSLEDGKTKIFKRILSVLKDGITIGDKKFEFLAYSSSQLRENAVWMFAPRDGLTA 480
            SPR S+     +TK++ RI SVL+DGI IGDKKFEFLA+SSSQLREN+ WMFAP D +TA
Sbjct: 421  SPRSST---QRRTKLYDRIYSVLRDGIVIGDKKFEFLAFSSSQLRENSAWMFAPIDRITA 480

Query: 481  AKIRKGMGDFHSIRNVAKYAARLGQSFGSSTETLSVSRREVEVIPDIEVESGSGVNYVFS 540
            A IR  MGDF  IRNVAKYAARLGQSF SS ETL+V   E+EVIPD+E+ S  G  YVFS
Sbjct: 481  AHIRAWMGDFDHIRNVAKYAARLGQSFSSSRETLNVRSDEIEVIPDVEIIS-LGTRYVFS 540

Query: 541  DGIGKISASFARKVAQKCGI-RHTPSAFQIRYAGFKGVISIDPTSSVKLSLRNSMLKYES 600
            DGIGKISA FARKVA+KCG+   +PSAFQIRY G+KGV+++DP SS KLSLR SM K+ES
Sbjct: 541  DGIGKISAEFARKVARKCGLTEFSPSAFQIRYGGYKGVVAVDPNSSKKLSLRKSMSKFES 600

Query: 601  ADTKLDVLSWSKYHPCFLNRQLITLLSTLGVQDHVFESKQKELIEQLDTIFTDPMKAQQA 660
             +TKLDVL+WSKY PC++NRQLITLLSTLGV D VFE KQ+E++++LD I T P++A +A
Sbjct: 601  ENTKLDVLAWSKYQPCYMNRQLITLLSTLGVTDSVFEKKQREVVDRLDAILTHPLEAHEA 660

Query: 661  LELMSPGENTNILKEMILCGYRPDSEPFLSMMLHTFRESKLLELRRKSRIFIPNGRAMMG 720
            L LM+PGENTNILK +ILCGY+PD+EPFLSMML  FR SKLLELR K+RIFI  GR+MMG
Sbjct: 661  LGLMAPGENTNILKALILCGYKPDAEPFLSMMLQNFRASKLLELRTKTRIFISGGRSMMG 720

Query: 721  CLDETGNLDYGEVFVQCSAHQKLHNDHIIFRRSKSNRHFIVTGTVVVAKNPCLHPGDVRV 780
            CLDET  L+YG+V VQ S               +  R FI+TG VVVAKNPCLHPGDVRV
Sbjct: 721  CLDETRTLEYGQVVVQYSDPM------------RPGRRFIITGPVVVAKNPCLHPGDVRV 780

Query: 781  LTAVDVPSLHHMVDCVVFPQRGSRPHPNECSGSDLDGDIYFVCWDPDLIPPQQVEPMDYT 840
            L AV+VP+L+HMVDCVVFPQ+G RPHPNECSGSDLDGDIYFVCWD +L+PP+  EPMDYT
Sbjct: 781  LQAVNVPALNHMVDCVVFPQKGLRPHPNECSGSDLDGDIYFVCWDQELVPPRTSEPMDYT 840

Query: 841  PVPSKLLDHDVTMEEVQEYFANYMVNDSLGIIANAHTAFADREPEKAMSKTCIKLAKLFS 900
            P P+++LDHDVT+EEV+EYFANY+VNDSLGIIANAHTAFAD+EP KA S  CI+LAK FS
Sbjct: 841  PEPTQILDHDVTIEEVEEYFANYIVNDSLGIIANAHTAFADKEPLKAFSDPCIELAKKFS 900

Query: 901  IAVDFPKTGVPALISADLRVQAYPDFMDKADKVSYKSDNVLGKLFR-MLDNVGPKIKIRS 960
             AVDFPKTGV A+I   L V+ YPDFM+K DK +Y+S NV+GKLFR + +   P I I+S
Sbjct: 901  TAVDFPKTGVAAVIPQHLYVKEYPDFMEKPDKPTYESKNVIGKLFREVKERAPPLISIKS 960

Query: 961  LTFTREEAQQAYDPDMEVEGFEEYLDDAFYHKNNYDMRLGNLMNYYKIKTEAELISGGSL 1020
              FT + A ++YD DMEV+GFEEY+D+AFY K NYD +LGNLM+YY IKTEAE++SGG +
Sbjct: 961  --FTLDVASKSYDKDMEVDGFEEYVDEAFYQKANYDFKLGNLMDYYGIKTEAEILSGGIM 1020

Query: 1021 TKSLSFTKKNEAESITMAVKSLRKEARGWFNENAELHFGHDKNVYARASAWYFVTYHHSY 1080
              S SFTK+ +AESI  AV++LRKE    FN + E     ++N  A+ASAWY VTYH SY
Sbjct: 1021 RMSKSFTKRRDAESIGRAVRALRKETLSLFNASEE-----EENESAKASAWYHVTYHSSY 1080

Query: 1081 WGWYDDGKKHGHFLSFPWCVHDKLIRIKKRKMNARAR 1114
            WG Y++G    HFLSF WCV+DKL+RIKK  +  R R
Sbjct: 1081 WGLYNEGLNRDHFLSFAWCVYDKLVRIKKTNLGRRQR 1093

[Close]
BLAST of Spg028666 vs. TAIR 10
Match: AT4G11130.1 (RNA-dependent RNA polymerase 2 )

HSP 1 Score: 761.1 bits (1964), Expect = 1.2e-219
Identity = 435/1125 (38.67%), Postives = 666/1125 (59.20%), Query Frame = 0 

Query: 4    TIQLYGFPPGVLQEAVKAFVERFTGEGTIDAIKIKRSKGRGR-RVYATIQFTDDE-GAKL 63
            T+++   P  ++ + +  F+E   GE T+ A++I  ++   + R +A +QFT  E  ++ 
Sbjct: 11   TVKISNVPQTIVADELLRFLELHLGEDTVFALEIPTTRDNWKPRDFARVQFTTLEVKSRA 70

Query: 64   IISLANRRLCYDTSYLKAREWKQDILPDPLVFEYNFKGLRLHLGCQISKE-RFSVLWTES 123
             +  +  +L + T  L+  E   DI+P P+        + L +G   S E RF  L    
Sbjct: 71   QLLSSQSKLLFKTHNLRLSEAYDDIIPRPVDPRKRLDDIVLTVGFPESDEKRFCALEKWD 130

Query: 124  TVSVDFGFERRELKFFISHPHVDYMLVLRYENIWQVELHKPQGQS--VDYLLIQLFGAPR 183
             V      E+R ++F++      Y + +R+E+I +       G +  +D  L++L   P+
Sbjct: 131  GVRCWILTEKRRVEFWVWESGDCYKIEVRFEDIIETLSCCVNGDASEIDAFLLKLKYGPK 190

Query: 184  IYERDTKSYRPITEDPFFTF-SEEIDTKWFRATDFTPSCCIGQSAALCLEIPYGRQLPNF 243
            +++R T       +   + F  E+ D  W R TDF+ S  IG S   CLE+  G  + + 
Sbjct: 191  VFKRVTVHIATKFKSDRYRFCKEDFDFMWIRTTDFSGSKSIGTSTCFCLEVHNGSTMLDI 250

Query: 244  HDNFAYYKEIKGKLTLVSGSTYSSNVNLVPVVRPP-LNINLPYAILFKINLLVQ-QGCLP 303
                 YY+E    LT V G T++S   +VP++    L +  PY ILF++N LV  Q    
Sbjct: 251  FSGLPYYREDTLSLTYVDGKTFASAAQIVPLLNAAILGLEFPYEILFQLNALVHAQKISL 310

Query: 304  GPALDISFYQMVDPQIHNIAFIDHALKKLYHLKECCYNPSKWLDDEYRKYF-RLKNPPLP 363
              A D+   +++       A +   LKKL+     CY+P  ++  + +    ++K+ P  
Sbjct: 311  FAASDMELIKILRGMSLETALV--ILKKLHQQSSICYDPVFFVKTQMQSVVKKMKHSPAS 370

Query: 364  PIFTLNE-GLVYVHRVQVTPCKVYFCGPEVNVSNRVLRGYPKYLDNFLRVSFVDEELDKM 423
                L E  ++   R  VTP K+Y  GPE+  +N V++ + +++ +F+RV+FV+E+  K+
Sbjct: 371  AYKRLTEQNIMSCQRAYVTPSKIYLLGPELETANYVVKNFAEHVSDFMRVTFVEEDWSKL 430

Query: 424  YSTELS--PRESSSLEDGKTKIFKRILSVLKDGITIGDKKFEFLAYSSSQLRENAVWMFA 483
             +  LS   +E   ++  +T I+ R+LS+L +GIT+G K+FEFLA+S+SQLR N+VWMFA
Sbjct: 431  PANALSVNSKEGYFVKPSRTNIYNRVLSILGEGITVGPKRFEFLAFSASQLRGNSVWMFA 490

Query: 484  PRDGLTAAKIRKGMGDFHSIRNVAKYAARLGQSFGSSTETLSVSRREVEVIPDIEVESGS 543
              + + A  IR+ MG F  IR+++K AAR+GQ F +S +TL V  ++VE IPDIEV +  
Sbjct: 491  SNEKVKAEDIREWMGCFRKIRSISKCAARMGQLFSASRQTLIVRAQDVEQIPDIEVTT-D 550

Query: 544  GVNYVFSDGIGKISASFARKVAQKCGIRHTPSAFQIRYAGFKGVISIDPTSSVKLSLRNS 603
            G +Y FSDGIGKIS +FA++VAQKCG+ H PSAFQIRY G+KGVI++D +S  KLSLR+S
Sbjct: 551  GADYCFSDGIGKISLAFAKQVAQKCGLSHVPSAFQIRYGGYKGVIAVDRSSFRKLSLRDS 610

Query: 604  MLKYESADTKLDVLSWSKYHPCFLNRQLITLLSTLGVQDHVFESKQKELIEQLDTIFTDP 663
            MLK++S +  L+V  W++  PCFLNR++I LLSTLG++D +FE+ Q   +  L  +  D 
Sbjct: 611  MLKFDSNNRMLNVTRWTESMPCFLNREIICLLSTLGIEDAMFEAMQAVHLSMLGNMLEDR 670

Query: 664  MKAQQALELMSPGENTNILKEMILCGYRPDSEPFLSMMLHTFRESKLLELRRKSRIFIPN 723
              A   L+ +S   + N+L +M+L GY P SEP+LSMML    ES+L EL+ + RI +P 
Sbjct: 671  DAALNVLQKLSGENSKNLLVKMLLQGYAPSSEPYLSMMLRVHHESQLSELKSRCRILVPK 730

Query: 724  GRAMMGCLDETGNLDYGEVFVQCS-AHQKLHNDHIIFRRSKSNRHFIVTGTVVVAKNPCL 783
            GR ++GC+DE G L+YG+V+V+ +    +L +    + R       +V G VVV KNPCL
Sbjct: 731  GRILIGCMDEMGILEYGQVYVRVTLTKAELKSRDQSYFRKIDEETSVVIGKVVVTKNPCL 790

Query: 784  HPGDVRVLTAVDVPSLHH--MVDCVVFPQRGSRPHPNECSGSDLDGDIYFVCWDPDLIPP 843
            HPGD+RVL A+          +DC++FPQ+G RPHPNECSG DLDGD +FV WD  +IP 
Sbjct: 791  HPGDIRVLDAIYEVHFEEKGYLDCIIFPQKGERPHPNECSGGDLDGDQFFVSWDEKIIPS 850

Query: 844  QQVEPMDYTPVPSKLLDHDVTMEEVQEYFANYMVNDSLGIIANAHTAFADREPEKAMSKT 903
            +   PMDY     +L+DHDVT+EE+ ++F +YM++D+LG+I+ AH   ADR+PEKA S+ 
Sbjct: 851  EMDPPMDYAGSRPRLMDHDVTLEEIHKFFVDYMISDTLGVISTAHLVHADRDPEKARSQK 910

Query: 904  CIKLAKLFSIAVDFPKTGVPALISADLRVQAYPDFMDKADKVSYKSDNVLGKLFRMLDNV 963
            C++LA L S AVDF KTG PA +   L+ + +PDF+++ +K +Y S++V GKL+R + + 
Sbjct: 911  CLELANLHSRAVDFAKTGAPAEMPYALKPREFPDFLERFEKPTYISESVFGKLYRAVKS- 970

Query: 964  GPKIKIRSLTFTREEAQQ----AYDPDMEVEGFEEYLDDAFYHKNNYDMRLGNLMNYYKI 1023
                   SL   + EA+     AYD  +E  GFE +++ A  H++ Y  +L +LM YY  
Sbjct: 971  -------SLAQRKPEAESEDTVAYDVTLEEAGFESFIETAKAHRDMYGEKLTSLMIYYGA 1030

Query: 1024 KTEAELISGGSLTKSLSFTKKNE-----AESITMAVKSLRKEARGWFNENAELHFGHDKN 1083
              E E+++G   TK +   + N       + IT++VK L KEA GWF ++ E     ++ 
Sbjct: 1031 ANEEEILTGILKTKEMYLARDNRRYGDMKDRITLSVKDLHKEAMGWFEKSCE----DEQQ 1090

Query: 1084 VYARASAWYFVTYHHSYWGWYDDGKKHGHFLSFPWCVHDKLIRIK 1105
                ASAWY+VTY+ +    + D K    FLSFPW V D L+ IK
Sbjct: 1091 KKKLASAWYYVTYNPN----HRDEKL--TFLSFPWIVGDVLLDIK 1114

[Close]
BLAST of Spg028666 vs. TAIR 10
Match: AT3G49500.1 (RNA-dependent RNA polymerase 6 )

HSP 1 Score: 572.8 bits (1475), Expect = 6.1e-163
Identity = 386/1074 (35.94%), Postives = 570/1074 (53.07%), Query Frame = 0 

Query: 95   YNFKGLRLHLGCQISKERFSVLWTESTV---------SVDFGFERR---ELKFFISHP-- 154
            Y   G+ L +G  +S++ F V W    V         +  F F +      K  + H   
Sbjct: 130  YKLAGITLEIGTLVSRDDFFVSWRAEGVDFLVDPFDNTCKFCFRKSTAFSFKDAVMHAVI 189

Query: 155  HVDYMLVLRYENIWQVELHKPQGQSVDYLLIQLFGAPRIYERDTKSYRPITEDPFFTFSE 214
            + DY L L   +I  V  +K     V  L++QL  +PR++      YR   +D + T   
Sbjct: 190  NCDYKLELLVRDIQTVRQYKTLHGFV--LILQLASSPRVW------YRTADDDIYDTVPG 249

Query: 215  EI---DTKWFRATDFTPSCCIGQ--SAALCLEIPYGRQLPNFHDNFAYYKEIKGKLTLVS 274
            ++   D  W R TDFT    IG+  S  + +   Y  +L    D F   +  + ++    
Sbjct: 250  DLLDDDDPWIRTTDFTQVGAIGRCHSYRVLISPRYENKLRTALDYFRMRRVQEERV---- 309

Query: 275  GSTYSSNVNLVPVVRPPLNIN---------LPYAILFKINLLVQQGCLPGPALDISFYQM 334
               +   +   P    P++ +         + + I+F +N ++ +G      L   F+ +
Sbjct: 310  --RWPPRIRNEPCFGEPVSDHFFCIHHKEGISFEIMFLVNSVLHRGVFNQFQLTERFFDL 369

Query: 335  V--DPQIHNIAFIDHALKKLYHLKECCYNPSKWLDDEYRKYFRLKNPPLPPIFTLNEGLV 394
            +   P+  NIA    +LK L   K   ++  K L  +  + +  KNP L      +E + 
Sbjct: 370  LRNQPKDVNIA----SLKHLCTYKRPVFDAYKRL--KLVQEWIQKNPKLLGSHEQSEDIS 429

Query: 395  YVHRVQVTPCKVYFCGPEVNVSNRVLRGYPKYLDNFLRVSFVDEELDKMYSTELS----- 454
             + R+ +TP + Y   PEV +SNRVLR Y    + FLRV+F+DE +  + S  LS     
Sbjct: 430  EIRRLVITPTRAYCLPPEVELSNRVLRRYKAVAERFLRVTFMDESMQTINSNVLSYFVAP 489

Query: 455  --PRESSSLEDGKTKIFKRILSVLKDGITIGDKKFEFLAYSSSQLRENAVWMFAPRDGLT 514
                 +SS    KT +FKR+ S+L DG  +  +K+ FLA+S++QLR+ + W FA      
Sbjct: 490  IVKDLTSSSFSQKTYVFKRVKSILTDGFKLCGRKYSFLAFSANQLRDRSAWFFAEDGKTR 549

Query: 515  AAKIRKGMGDFHSIRNVAKYAARLGQSFGSSTETLSVSRREVEV-IPDIEVESGSGVNYV 574
             + I+  MG F   +NVAK AAR+G  F S+  T+ V   EV+  +PDIE        YV
Sbjct: 550  VSDIKTWMGKFKD-KNVAKCAARMGLCFSSTYATVDVMPHEVDTEVPDIERN-----GYV 609

Query: 575  FSDGIGKISASFARKVAQ--KCGIRHTPSAFQIRYAGFKGVISIDPTSS--VKLSLRNSM 634
            FSDGIG I+   A +V +  K  + ++P A+QIRYAGFKGV++  P+ S  ++L+LR+SM
Sbjct: 610  FSDGIGTITPDLADEVMEKLKLDVHYSPCAYQIRYAGFKGVVARWPSKSDGIRLALRDSM 669

Query: 635  LKYESADTKLDVLSWSKYHPCFLNRQLITLLSTLGVQDHVFESKQKELIEQLDTIFTDPM 694
             K+ S  T L++ SW+++ P FLNRQ+ITLLS LGV D +F   Q+ ++ +L+ I  D  
Sbjct: 670  KKFFSKHTILEICSWTRFQPGFLNRQIITLLSVLGVPDEIFWDMQESMLYKLNRILDDTD 729

Query: 695  KAQQALELMSPGENTNILKEMILCGYRPDSEPFLSMMLHTFRESKLLELRRKSRIFIPNG 754
             A + L   S  E  N    M+  G++P +EP L  ML + R ++L  LR KSRIF+ +G
Sbjct: 730  VAFEVL-TASCAEQGNTAAIMLSAGFKPKTEPHLRGMLSSVRIAQLWGLREKSRIFVTSG 789

Query: 755  RAMMGCLDETGNLDYGEVFVQCS--AHQKLHNDH-IIFRRSKSNRHFIVTGTVVVAKNPC 814
            R +MGCLDE G L++G+ F+Q S  + +   + H   F+ +K++   +V G V +AKNPC
Sbjct: 790  RWLMGCLDEAGILEHGQCFIQVSKPSIENCFSKHGSRFKETKTDLE-VVKGYVAIAKNPC 849

Query: 815  LHPGDVRVLTAVDVPSLHHMVDCVVFPQRGSRPHPNECSGSDLDGDIYFVCWDPDLIPP- 874
            LHPGDVR+L AVDVP LHHM DC++FPQ+G RPH NE SGSDLDGD+YFV WD  LIPP 
Sbjct: 850  LHPGDVRILEAVDVPQLHHMYDCLIFPQKGDRPHTNEASGSDLDGDLYFVAWDQKLIPPN 909

Query: 875  -QQVEPMDYTPVPSKLLDHDVTMEEVQEYFANYMVNDSLGIIANAHTAFADREPEKAMSK 934
             +    M Y     K L   V  +++ ++FA  + N+ LG I NAH   ADR    AM +
Sbjct: 910  RKSYPAMHYDAAEEKSLGRAVNHQDIIDFFARNLANEQLGTICNAHVVHADRSEYGAMDE 969

Query: 935  TCIKLAKLFSIAVDFPKTGVPALISADLRVQAYPDFMDKADKVSYKSDNVLGKLFRMLDN 994
             C+ LA+L + AVDFPKTG    +   L+ + YPDFM K D  +YKS+ +LG+L+R +  
Sbjct: 970  ECLLLAELAATAVDFPKTGKIVSMPFHLKPKLYPDFMGKEDYQTYKSNKILGRLYRRVKE 1029

Query: 995  VGPKIKIRSLTFTREEAQQAYDPDMEVEGFEEYLDDAFYHKNNYDMRLGNLMNYYKIKTE 1054
            V  +    S   + + +   YD  +E+ GFE+ + +A+ HK  YD +L  L+  YK++ E
Sbjct: 1030 VYDEDAEASSEESTDPSAIPYDAVLEIPGFEDLIPEAWGHKCLYDGQLIGLLGQYKVQKE 1089

Query: 1055 AELISG--GSLTKSLSFTKKNEAESITMAVKSLRKEARGWFNENAELHFG---HDKNVY- 1107
             E+++G   S+ K  S  +    E +  +  SL+KE R  F E    H      +KN+  
Sbjct: 1090 EEIVTGHIWSMPKYTSKKQGELKERLKHSYNSLKKEFRKVFEETIPDHENLSEEEKNILY 1149

[Close]
BLAST of Spg028666 vs. TAIR 10
Match: AT2G19920.1 (RNA-dependent RNA polymerase family protein )

HSP 1 Score: 123.6 bits (309), Expect = 9.8e-28
Identity = 162/619 (26.17%), Postives = 258/619 (41.68%), Query Frame = 0 

Query: 420 PRESSSLEDGKTKIFKRILSVLKDGITIGDKKFEFLAYSSSQLRE-------NAVWMFAP 479
           P+ES+  ++     + +   + K+GI +G ++++F  +      E         V  +  
Sbjct: 258 PKESTYCDNP----YSKYKEIAKNGIMVGLRRYQFFVFKDGGKAEKKKRNSTKQVKCYFI 317

Query: 480 RDGLTAAK------IRKGMG---------DFHSIRNVAKYAARLGQSFGSSTETLSVSRR 539
           R G TA+       I  GM            H++ + A Y AR      S T+ L V   
Sbjct: 318 RTGSTASSDMENPYILSGMSIHEARMHFMHVHTLPSPANYMARFSLIL-SKTKKLEVDMT 377

Query: 540 EVEV--IPDI--------EVESGSGVNYVFSDGIGKISASFARKV--------------A 599
           E+ V  I DI        +V   +G   + SDG G IS   AR                 
Sbjct: 378 EITVMQIDDIHCHDQSNNDVLDKNGKPRIHSDGTGYISEDLARMCPLNIFKGKSMRSNNI 437

Query: 600 QKCGIRHTPSAFQIRY----AGFKGVISID---PTSSVKLSLRNSMLK-YE-------SA 659
           Q   ++  P   QIR     +  KG+  ++   P  +V+  +R SM+K Y+       S 
Sbjct: 438 QGTCVQEPPLLIQIRMFNDGSAVKGIFLLNKNLPPQTVQ--VRPSMIKVYKDKNLSNFST 497

Query: 660 DTKLDVLSWSK-YHPCFLNRQLITLLSTLGVQDHVFESKQKELIEQLDTIFTDPMKAQQA 719
              L+V++ S       L++ L+ LLS  GV +  F       +E+  TIF     A +A
Sbjct: 498 FNSLEVVTTSNPPKRAKLSKNLVALLSYGGVPNDFFLDILLNTLEKKKTIFFKVRAAGKA 557

Query: 720 LELMSPGENTNILKEMILCGYRPDSEPFLSMMLHTFRESKLLELR----RKSRIFIPNGR 779
                  ++ N L +MI+ G  P  EP+L   L     SKLL+L     +  ++ I    
Sbjct: 558 ALHYGNMDDKNAL-QMIMAGI-PLDEPYLKHYL-----SKLLKLEKDDLKAGKLPIDESY 617

Query: 780 AMMGCLDETGNLDYGEVFVQCSAHQKLHNDHIIFRRSKSNRHFIVTGTVVVAKNPCLHPG 839
            +MG +D TG L   EV     +                         V+V +NP LH G
Sbjct: 618 YLMGTVDPTGELKEDEVSGLAKSQD-----------------------VLVYRNPGLHFG 677

Query: 840 DVRVLTAVDVPSLHHMVD----CVVFPQRGSRPHPNECSGSDLDGDIYFVCWDPDLIPPQ 899
           D+ +L A  V SL   V      V FPQ+G R   +E +G D DGD+YF+  +P L+  +
Sbjct: 678 DIHILKATYVKSLEQYVGNSKYGVFFPQKGPRSLGDEIAGGDFDGDMYFISRNPKLL--E 737

Query: 900 QVEPMD-----------YTPVPSKLLDHDVTMEEVQEYF--ANYMVNDSLGIIANAHTAF 947
             +P +           YT      L  +   EE+ + F    +  +  +G  A++  A 
Sbjct: 738 HYKPSEPWVSSSPRSKIYTGRQPSELSPEQLEEELFKIFLKTGFSPSSVIGQAADSWLAI 797

[Close]
BLAST of Spg028666 vs. TAIR 10
Match: AT2G19910.1 (RNA-dependent RNA polymerase family protein )

HSP 1 Score: 118.2 bits (295), Expect = 4.1e-26
Identity = 107/394 (27.16%), Postives = 173/394 (43.91%), Query Frame = 0 

Query: 615 LNRQLITLLSTLGVQDHVFESKQKELIEQLDTIFTDPMKAQQALELMSPGENTNILKEMI 674
           L+R L+ LLS  GV +  F +  +  +E+  TIF     A +A       + T    +MI
Sbjct: 517 LSRNLVALLSYGGVPNDFFLNILRNTLEESKTIFYSERAAFKAAINYGDDQYT---ADMI 576

Query: 675 LCGYRPDSEPFLSMMLHTFRESKLLELRRKSRIFIPNGRAMMGCLDETGNLDYGEVFVQC 734
           L G  P  EP+L   L    +++   L +  R  I     +MG +D TG L   E+ V  
Sbjct: 577 LVGI-PLDEPYLKDRLSYLLKTERNAL-KAGRFPIDESYYIMGTVDPTGELKENEICVIL 636

Query: 735 SAHQKLHNDHIIFRRSKSNRHFIVTGTVVVAKNPCLHPGDVRVLTAVDVPSLHHMVD--- 794
            + Q                   ++G V+V +NP LH GD+ VL A  V +L   V    
Sbjct: 637 HSGQ-------------------ISGDVLVYRNPGLHFGDIHVLKATYVKALEDYVGNAK 696

Query: 795 -CVVFPQRGSRPHPNECSGSDLDGDIYFVCWDPDLIPP-QQVEPMDYTPVPSKL------ 854
             V FPQ+G R   +E +G D DGD+YF+  +P L+   +  EP   +  PSK+      
Sbjct: 697 FAVFFPQKGPRSLGDEIAGGDFDGDMYFISRNPKLLEHFKPSEPWVSSSKPSKIYCGRKP 756

Query: 855 --LDHDVTMEEVQEYF--ANYMVNDSLGIIANAHTAFAD---------REPEKAMSKTCI 914
             L  +   EE+ + F  A +   D +G+ A+      D          + +    K  +
Sbjct: 757 SELSEEELEEELFKMFLKARFCKRDVIGMAADCWLGIMDPFLTLGDESAKEKYERKKNIL 816

Query: 915 KLAKLFSIAVDFPKTGVPALISADLRVQAYPDFMDKADKVSYKSDNVLGKLFRMLDNVG- 974
           KL  ++  A+D PK G    +  DL ++ +P +M++  K  ++S ++LG +F  +D+   
Sbjct: 817 KLIDIYYDALDAPKKGAKVDLPPDLEIKNFPHYMERDPKRDFRSTSILGLIFDTVDSHNA 876

Query: 975 ---PKIKIRSLTFTREEAQQAYDPDMEVEGFEEY 981
              P  +I  L +  +E       D     +E Y
Sbjct: 877 EEPPPSEISKLWYFEDEPVPKSHMDKFTSWYENY 886

The following BLAST results are available for this feature:
BLAST of Spg028666 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038877934.10.0e+0088.16RNA-dependent RNA polymerase 1-like isoform X1 [Benincasa hispida] >XP_038877936... [more]
XP_022943176.10.0e+0087.89RNA-dependent RNA polymerase 1-like [Cucurbita moschata][more]
XP_023539816.10.0e+0087.89RNA-dependent RNA polymerase 1-like [Cucurbita pepo subsp. pepo][more]
KAG6599932.10.0e+0087.89RNA-dependent RNA polymerase 1, partial [Cucurbita argyrosperma subsp. sororia][more]
NP_001267682.10.0e+0087.35RNA-dependent RNA polymerase 1-like [Cucumis sativus] >XP_011654424.1 RNA-depend... [more]
BLAST of Spg028666 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9LQV20.0e+0060.88RNA-dependent RNA polymerase 1 OS=Arabidopsis thaliana OX=3702 GN=RDR1 PE=2 SV=1[more]
Q0DXS39.5e-26261.43Probable RNA-dependent RNA polymerase 1 OS=Oryza sativa subsp. japonica OX=39947... [more]
O825041.7e-21838.67RNA-dependent RNA polymerase 2 OS=Arabidopsis thaliana OX=3702 GN=RDR2 PE=1 SV=1[more]
Q7XM312.3e-20737.32Probable RNA-dependent RNA polymerase 2 OS=Oryza sativa subsp. japonica OX=39947... [more]
Q9SG028.6e-16235.94RNA-dependent RNA polymerase 6 OS=Arabidopsis thaliana OX=3702 GN=RDR6 PE=1 SV=1[more]
BLAST of Spg028666 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1FR020.0e+0087.89RNA-dependent RNA polymerase OS=Cucurbita moschata OX=3662 GN=LOC111447986 PE=3 ... [more]
E9NWK70.0e+0087.35RNA-dependent RNA polymerase OS=Cucumis sativus OX=3659 GN=Csa_5G239640 PE=2 SV=... [more]
A0A6J1K2Q90.0e+0087.26RNA-dependent RNA polymerase OS=Cucurbita maxima OX=3661 GN=LOC111490531 PE=3 SV... [more]
H3K3Y90.0e+0086.91RNA-dependent RNA polymerase OS=Cucumis sativus OX=3659 GN=RDR1 PE=2 SV=1[more]
A0A0S1YCZ70.0e+0087.00RNA-dependent RNA polymerase OS=Cucumis sativus OX=3659 GN=RDR1b PE=2 SV=1[more]
BLAST of Spg028666 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G14790.10.0e+0060.88RNA-dependent RNA polymerase 1 [more]
AT4G11130.11.2e-21938.67RNA-dependent RNA polymerase 2 [more]
AT3G49500.16.1e-16335.94RNA-dependent RNA polymerase 6 [more]
AT2G19920.19.8e-2826.17RNA-dependent RNA polymerase family protein [more]
AT2G19910.14.1e-2627.16RNA-dependent RNA polymerase family protein [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007855RNA-dependent RNA polymerase, eukaryotic-typePFAMPF05183RdRPcoord: 371..944
e-value: 6.3E-187
score: 622.7
IPR007855RNA-dependent RNA polymerase, eukaryotic-typePANTHERPTHR23079RNA-DEPENDENT RNA POLYMERASEcoord: 2..1109
NoneNo IPR availablePANTHERPTHR23079:SF44RNA-DEPENDENT RNA POLYMERASEcoord: 2..1109
NoneNo IPR availableCDDcd00590RRM_SFcoord: 5..69
e-value: 2.17186E-6
score: 44.6033
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 3..81

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg028666.1Spg028666.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0070919 production of siRNA involved in gene silencing by small RNA
biological_process GO:0030422 production of siRNA involved in RNA interference
biological_process GO:0001172 transcription, RNA-templated
cellular_component GO:0031380 nuclear RNA-directed RNA polymerase complex
molecular_function GO:0003723 RNA binding
molecular_function GO:0003968 RNA-directed 5'-3' RNA polymerase activity
molecular_function GO:0003676 nucleic acid binding