Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTTGATTTTCCTTGGATTCCAAGGGCCCATTCCTTCAAATTAGCTACTATTCCAAGAAGGGAAGATATGCATCGCTGTGTGGGAGATTTTATTTCTAATGAAGGAAATTGGGATATTCAGAAACTTGAGTCTATGCTTTGGCCAGTTGATATTGAGATTGTATTATCAGTTCCCATATGCAATTCTAGAACCCCTTATGGTTGGATGTGGCATTTTTCTAGAGATGGGGTCTTTTCTGTCAAAAGTGCTTACAAACTATGCATAAGTAGCAAAGAAGCAGAAGCTACCTCTTGTTCTGGGGTTGAGCTAGATTGGTGGAGGAATTTTTGGGCTACGCCAATCCCTTCGAAAGTAAGAATATTAATTTGGAGAGTTTTCCATAATTTTCTTCCTGTTGCCCAAAATCTTTTTGCTAGACATATTATTCAGTCCCCTAACTGCATCAGTTGTAATAAAGTGGAGTCAGCTCTTCATACTTTTTTTGGATGCAGGCGGTTGAAAGCCTTTTGGAAAGGTCTTTTGCCAGTAGCTCTGCCCCCGATTGATTATAACGGGAATATTAAGGATCTCTTGTTTTTTTTAGGAAGCAAATTGCCTCAACAAAGTTTTGCCCTTCTTTGTGTTGGAATGTGGGCAGCCTGGAATGATCGGAACAGTTTATTAAGGGGGGAGAAGATAATGCCGTTTGAAGACAGAATTTTATGGGTTTTAGATTACCTGAGAGAATTTCAAGCAGTAAATAATATCAATGGGCCAAAAACCAAATTGGCAAGCAGAACCGAAATAGCTGATGAAGAGTTTTGTTGGTGTCCTCCATCTGGGGACGATCTTACCCTTAATGTTGATGCAACTTGTGCAGAAGATCGTTTTCGTGTTGGTTTTGGGGCCGTTGTCCGTGATCACGCTGGAAAGTGCTTGGTAGCCTCAGCAAAGTGTGTCTCTTTTATATTAGAGTCTTCTGCAGCGGAAGCTTTAGCTCTCCTCCATGGTATGAGATTGGTGGTTGAATTGGATCTGAAGGTGACGAAAATTGAGATAGATGCAAAAATAATTGTTGAAGCTGTGTTGAATGATCGTTGGAGAAAGTCTTCGTTGGGAACCATTATTGGGGAAATTAGGGAGTTGTTATTTTCTCAATGTTTTAAGGATTTAGCTTTTATTCCCAGAAATAGAAATCAGGTTGCAAATGGTGTTGCTAAATGGGCCGTGAAAAATGGTTTGTCTTTAATTTGGACAATCTGTTCCCCCCATGGCTGGAAAGTCTCCTTCTGTATGATGGCTGTTTTGAGCCTTCTGTGGGCTGAGTTTGCGTATAAAATCATGTTTGATTTAAAAAAAAAAAAAAAAAAAAACAATCCAACAAATTATAACACTTCTTTACCATTTAAATTTAATATTGTTTTGACAATTAAAATCTAATATTCTATAACAAATCTAAGAACCTTGACCGAATATCTTCGTACTTAAATTTGAAAAAACTGTTAAAAGGATTTTGACCAACTTGTAAAATATCAAGTATTATTGTTTAAAGATAACAAAACAGACATTTTTATTCATGTAAAAAAAAATTAAAATGAGAGACGACGTTTTACTACATATTACATTCTGTAGTATAGATAATTCAACCACCAAAATGAATATTTTGATATTGACTTAATGAAACCAAAAAAAAAATCGTCAACTCAGTTATCGCTCATGTAGTTGTGATGAATGCTCCGATAGGGTGTGTAAGTGTACTTAATACGAGACAAATGGTTAAACAAAAAAAGAAAACCCTAAAATTCTTCCTCCATTGTATACACATGGTACGTATTTGTTGTGATTTCAAAAAAAAAACATATTTGTATGGATTAGCACGTATTGTTATTGTGTTGTAATTCTAATACACATTCTCGTCCCAAACCCCTAATACAAACGTGATAGAAGTAGCTTCCATTGAGGACCATGCTCCTTTTCCTTGAAAGGAACTCCAAAAAATATGCTCGTAAAATAGTAAAGCAGGCAAGCATACAATCAATGGAAGATACGTAGGGTCCACACAACCCACGACAAGGAACCCTTACCTGAAAATTGAAAATAGAATAGAACAAACAATATGTATGCTCATTGAGCTATAGATAACCAACACGAATACTCAACCTAGTCAGACAGTAACAATAATAAATAACCAAACAAACACTAACTAACTAGAATATCCAAATAAAACAAGCAAGGAACCACAGGGACAGGCATTTACCCAAAAACAAAGAACTGGAGGCTCAGCAAGCAAAGGCTCGATTACGACAAGGACACAGGCTGTGAGTGTAGCAGCAAGGCAAGCGACGTGGGTGGGCATGCACGGCGAAGTGGCTCGTCGGAGCAGCATGTGCGTGTTGCTGCGGGGCTAAGTGCAGCGAGTAGCACGACGAGACGAGCTGGGTGA
mRNA sequence
ATGTTTGATTTTCCTTGGATTCCAAGGGCCCATTCCTTCAAATTAGCTACTATTCCAAGAAGGGAAGATATGCATCGCTGTGTGGGAGATTTTATTTCTAATGAAGGAAATTGGGATATTCAGAAACTTGAGTCTATGCTTTGGCCAGTTGATATTGAGATTGTATTATCAGTTCCCATATGCAATTCTAGAACCCCTTATGGTTGGATGTGGCATTTTTCTAGAGATGGGGTCTTTTCTGTCAAAAGTGCTTACAAACTATGCATAAGTAGCAAAGAAGCAGAAGCTACCTCTTGTTCTGGGGTTGAGCTAGATTGGTGGAGGAATTTTTGGGCTACGCCAATCCCTTCGAAAGTAAGAATATTAATTTGGAGAGTTTTCCATAATTTTCTTCCTGTTGCCCAAAATCTTTTTGCTAGACATATTATTCAGTCCCCTAACTGCATCAGTTGTAATAAAGTGGAGTCAGCTCTTCATACTTTTTTTGGATGCAGGCGGTTGAAAGCCTTTTGGAAAGGTCTTTTGCCAGTAGCTCTGCCCCCGATTGATTATAACGGGAATATTAAGGATCTCTTGTTTTTTTTAGGAAGCAAATTGCCTCAACAAAGTTTTGCCCTTCTTTGTGTTGGAATGTGGGCAGCCTGGAATGATCGGAACAGTTTATTAAGGGGGGAGAAGATAATGCCGTTTGAAGACAGAATTTTATGGGTTTTAGATTACCTGAGAGAATTTCAAGCAGTAAATAATATCAATGGGCCAAAAACCAAATTGGCAAGCAGAACCGAAATAGCTGATGAAGAGTTTTGTTGGTGTCCTCCATCTGGGGACGATCTTACCCTTAATGTTGATGCAACTTGTGCAGAAGATCGTTTTCGTGTTGGTTTTGGGGCCGTTGTCCGTGATCACGCTGGAAAGTGCTTGGTAGCCTCAGCAAAGTGTGTCTCTTTTATATTAGAGTCTTCTGCAGCGGAAGCTTTAGCTCTCCTCCATGGTATGAGATTGGTGGTTGAATTGGATCTGAAGGTGACGAAAATTGAGATAGATGCAAAAATAATTGTTGAAGCTGTGTTGAATGATCGTTGGAGAAAGTCTTCGTTGGGAACCATTATTGGGGAAATTAGGGAGTTGTTATTTTCTCAATGTTTTAAGGATTTAGCTTTTATTCCCAGAAATAGAAATCAGGTTGCAAATGGTGTTGCTAAATGGGCCGTGAAAAATGGCTGTGAGTGTAGCAGCAAGGCAAGCGACGTGGGTGGGCATGCACGGCGAAGTGGCTCGTCGGAGCAGCATGTGCGTGTTGCTGCGGGGCTAAGTGCAGCGAGTAGCACGACGAGACGAGCTGGGTGA
Coding sequence (CDS)
ATGTTTGATTTTCCTTGGATTCCAAGGGCCCATTCCTTCAAATTAGCTACTATTCCAAGAAGGGAAGATATGCATCGCTGTGTGGGAGATTTTATTTCTAATGAAGGAAATTGGGATATTCAGAAACTTGAGTCTATGCTTTGGCCAGTTGATATTGAGATTGTATTATCAGTTCCCATATGCAATTCTAGAACCCCTTATGGTTGGATGTGGCATTTTTCTAGAGATGGGGTCTTTTCTGTCAAAAGTGCTTACAAACTATGCATAAGTAGCAAAGAAGCAGAAGCTACCTCTTGTTCTGGGGTTGAGCTAGATTGGTGGAGGAATTTTTGGGCTACGCCAATCCCTTCGAAAGTAAGAATATTAATTTGGAGAGTTTTCCATAATTTTCTTCCTGTTGCCCAAAATCTTTTTGCTAGACATATTATTCAGTCCCCTAACTGCATCAGTTGTAATAAAGTGGAGTCAGCTCTTCATACTTTTTTTGGATGCAGGCGGTTGAAAGCCTTTTGGAAAGGTCTTTTGCCAGTAGCTCTGCCCCCGATTGATTATAACGGGAATATTAAGGATCTCTTGTTTTTTTTAGGAAGCAAATTGCCTCAACAAAGTTTTGCCCTTCTTTGTGTTGGAATGTGGGCAGCCTGGAATGATCGGAACAGTTTATTAAGGGGGGAGAAGATAATGCCGTTTGAAGACAGAATTTTATGGGTTTTAGATTACCTGAGAGAATTTCAAGCAGTAAATAATATCAATGGGCCAAAAACCAAATTGGCAAGCAGAACCGAAATAGCTGATGAAGAGTTTTGTTGGTGTCCTCCATCTGGGGACGATCTTACCCTTAATGTTGATGCAACTTGTGCAGAAGATCGTTTTCGTGTTGGTTTTGGGGCCGTTGTCCGTGATCACGCTGGAAAGTGCTTGGTAGCCTCAGCAAAGTGTGTCTCTTTTATATTAGAGTCTTCTGCAGCGGAAGCTTTAGCTCTCCTCCATGGTATGAGATTGGTGGTTGAATTGGATCTGAAGGTGACGAAAATTGAGATAGATGCAAAAATAATTGTTGAAGCTGTGTTGAATGATCGTTGGAGAAAGTCTTCGTTGGGAACCATTATTGGGGAAATTAGGGAGTTGTTATTTTCTCAATGTTTTAAGGATTTAGCTTTTATTCCCAGAAATAGAAATCAGGTTGCAAATGGTGTTGCTAAATGGGCCGTGAAAAATGGCTGTGAGTGTAGCAGCAAGGCAAGCGACGTGGGTGGGCATGCACGGCGAAGTGGCTCGTCGGAGCAGCATGTGCGTGTTGCTGCGGGGCTAAGTGCAGCGAGTAGCACGACGAGACGAGCTGGGTGA
Protein sequence
MFDFPWIPRAHSFKLATIPRREDMHRCVGDFISNEGNWDIQKLESMLWPVDIEIVLSVPICNSRTPYGWMWHFSRDGVFSVKSAYKLCISSKEAEATSCSGVELDWWRNFWATPIPSKVRILIWRVFHNFLPVAQNLFARHIIQSPNCISCNKVESALHTFFGCRRLKAFWKGLLPVALPPIDYNGNIKDLLFFLGSKLPQQSFALLCVGMWAAWNDRNSLLRGEKIMPFEDRILWVLDYLREFQAVNNINGPKTKLASRTEIADEEFCWCPPSGDDLTLNVDATCAEDRFRVGFGAVVRDHAGKCLVASAKCVSFILESSAAEALALLHGMRLVVELDLKVTKIEIDAKIIVEAVLNDRWRKSSLGTIIGEIRELLFSQCFKDLAFIPRNRNQVANGVAKWAVKNGCECSSKASDVGGHARRSGSSEQHVRVAAGLSAASSTTRRAG
Homology
BLAST of Sed0027430 vs. NCBI nr
Match:
XP_022158377.1 (uncharacterized protein LOC111024874 [Momordica charantia])
HSP 1 Score: 214.5 bits (545), Expect = 1.8e-51
Identity = 117/406 (28.82%), Postives = 195/406 (48.03%), Query Frame = 0
Query: 2 FDFPWIPRAHSFKLATIPRREDMHRCVGDFISNEGNWDIQKLESMLWPVDIEIVLSVPIC 61
F PW+PR +FK + V FI+ +GNWD+ + D +++LS+PI
Sbjct: 1028 FSDPWLPRPTTFKPLRF-NNGALDTTVASFITADGNWDVTSISHSFCNEDRDLILSMPIS 1087
Query: 62 NSRTPYGWMWHFSRDGVFSVKSAYKLCISSKEAEATSCSGVELDWWRNFWATPIPSKVRI 121
+ W+WH+ + G +SV+S YKL + K ++ + W + W +P+K++I
Sbjct: 1088 SYNLQDSWLWHYDKRGNYSVRSGYKLYMHLKCNATSASTNYRGTQWNSIWKLTVPTKIKI 1147
Query: 122 LIWRVFHNFLPVAQNLFARHIIQSPNCISC-NKVESALHTFFGCRRLKAFWKGLLP-VAL 181
IWR H +P AQNL R I + P C C ++ ES +H FF C+R + W+ L P +
Sbjct: 1148 FIWRSAHEHIPTAQNLLLRGIGELPACTICGDRRESIIHAFFHCKRARQIWRTLFPFLTC 1207
Query: 182 PPIDYNGNIKDLLFFLGSKLPQQSFALLCVGMWAAWNDRNSLLRGEKIMPFEDRILWVLD 241
+ N + +L L +L + L + W WNDRNSL+ G+++ P E + W+
Sbjct: 1208 LSAEDNISFLELWSSLTEQLEPKDLNLAAITGWGIWNDRNSLIHGKQVSPVEFKCEWLTP 1267
Query: 242 YL-REFQAVNNINGPKTKLASRTEIADEEFCWCPPSGDDLTLNVDATCAEDRFRVGFGAV 301
+L QA + P+T+ R + W P S L LN DA C FG +
Sbjct: 1268 FLDSHSQAQMSNYSPRTQSNHRPVVQ----YWRPSSSVSLKLNTDAACR--GASTSFGCI 1327
Query: 302 VRDHAGKCLVASAKCVSFILESSAAEALALLHGMRLVVELDLKVTKIEIDAKIIVEAVLN 361
+RD + + A++ V F L AE +L G++ + ++E D+ + ++ + N
Sbjct: 1328 IRDSSCSLVAATSIRVPFPLSPLLAEIRCILEGLKFAAASNFTHLEVESDSLLAIQLIRN 1387
Query: 362 DRWRKSSLGTIIGEIRELLFSQCFKDLAFIPRNRNQVANGVAKWAV 405
+ + + EI+ L F + R N+ A+G+AKW +
Sbjct: 1388 EIHTRGDEQNWVMEIQALTCCFAFISFSHSSRQCNRAAHGLAKWGI 1426
BLAST of Sed0027430 vs. NCBI nr
Match:
XP_030502555.1 (uncharacterized protein LOC115717715 [Cannabis sativa])
HSP 1 Score: 211.8 bits (538), Expect = 1.2e-50
Identity = 125/409 (30.56%), Postives = 197/409 (48.17%), Query Frame = 0
Query: 6 WIPRAHSFKLATIPRR--EDMHRCVGDFISNEGNWDIQKLESMLWPVDIEIVLSVPICNS 65
WIP FK P R + V +I++ W+ + L P D+E +L++P+ +
Sbjct: 953 WIPGHDFFK----PFRFTGPSNNLVAHYITDAREWNWELLHRDFSPADVEKILTIPLSYN 1012
Query: 66 RTPYGWMWHFSRDGVFSVKSAYKLCISSKEAEATSCSGVELDWWRNFWATPIPSKVRILI 125
W+WH+ G ++VKS Y L S + + TS SG + WW+ FW +PSKVRI
Sbjct: 1013 SMSDCWIWHYECSGEYTVKSRYTLACSLENRDQTSSSGSQETWWKRFWGLTLPSKVRIFG 1072
Query: 126 WRVFHNFLPVAQNLFARHIIQSPNCISCNKV-ESALHTFFGCRRLKAFWKGL-LPVALPP 185
W+V ++ LPVA NLF R +I S C C++V ES H F C KA W+ +
Sbjct: 1073 WKVINSALPVATNLFHRKVITSATCSLCSRVWESIGHALFSCCHAKAVWQNTGFQLDFQK 1132
Query: 186 IDYNGNIKDLLFFLGSKLPQQSFALLCVGMWAAWNDRNSLLRGEKIMPFEDRILWVLDYL 245
Y + D L FL + L L MW W+DRN+ + G+++ YL
Sbjct: 1133 ASYMKD-GDYLMFLSTILTNSELERLFCTMWFIWSDRNNFIHGKQLKQPMAISSQAEAYL 1192
Query: 246 REFQAVNNINGPKTKLASRTEIADEEFCWCPPSGDDLTLNVDATCAEDRFRVGFGAVVRD 305
F N++ T R W PP L +NVDA R ++G G ++RD
Sbjct: 1193 ANF---NSVQLQATPATFRVAADVNRVKWTPPPETKLKMNVDAAIDSSRSKIGMGVIIRD 1252
Query: 306 HAGKCLVASAKCVSFILESSAAEALALLHGMRLVVELDLKVTKIEIDAKIIVEAVLNDRW 365
+G + A +K +S EA A+ G++L +L L++ +E D ++V A+ +
Sbjct: 1253 SSGSVVAAMSKPAVGNFKSQEMEAKAMFWGLQLAEQLQLQLHYVETDCLMLVTAINGAQS 1312
Query: 366 RKSSLGTIIGEIRELLFSQCFKDLAFIPRNRNQVANGVAKWAVKNGCEC 411
+ SS ++ +I L S ++ + R+ NQ A+G+AK A++ +C
Sbjct: 1313 QHSSFHDLVKDISYHLSSSSNACISHVRRDANQAAHGLAKQALQLDNDC 1353
BLAST of Sed0027430 vs. NCBI nr
Match:
XP_030497600.1 (uncharacterized protein LOC115713257 [Cannabis sativa])
HSP 1 Score: 210.7 bits (535), Expect = 2.6e-50
Identity = 125/410 (30.49%), Postives = 200/410 (48.78%), Query Frame = 0
Query: 6 WIPRAHSFKLATIPRREDMHRCVGDFISNEGNWDIQKLESMLWPVDIEIVLSVPICNSRT 65
WIP FK + V D+I++ WD++ L + P DI+ +L++P+ + T
Sbjct: 953 WIPGNEYFK--PLRFTGSCSNLVADYITDTREWDLELLHNDFSPADIDRILTIPLSYNST 1012
Query: 66 PYGWMWHFSRDGVFSVKSAYKLCISSKEAEATSCSGVELDWWRNFWATPIPSKVRILIWR 125
W WH+ G ++VKS Y L S + + +S S + WW+ FW +PSKVRI WR
Sbjct: 1013 RDRWRWHYDSSGDYTVKSGYNLACSLENKDHSSSSTSQEAWWQLFWGLNLPSKVRIFGWR 1072
Query: 126 VFHNFLPVAQNLFARHIIQSPNCISCNKV-ESALHTFFGCRRLKAFWKGL---LPVALPP 185
V ++ LPVAQNLF R +I S C C++ ES H F C K+ W+ L
Sbjct: 1073 VINSALPVAQNLFHRKVITSATCSLCSRAWESIGHALFSCCHAKSVWQHTSFQLDFTKAS 1132
Query: 186 IDYNGNIKDLLFFLGSKLPQQSFALLCVGMWAAWNDRNSLLRGEKIMPFEDRILWVLDYL 245
+G D L FL + L + L MW W+DRN+ + +++ YL
Sbjct: 1133 FMKDG---DYLLFLSTILTKSELEKLFCTMWFIWSDRNNYIHCKQLKHPMAISSQAEAYL 1192
Query: 246 REFQAVNNINGPKTKLASRTEIADEEFC-WCPPSGDDLTLNVDATCAEDRFRVGFGAVVR 305
F +V + P + AD W PP+ +L +NVDA R ++G G ++R
Sbjct: 1193 ANFHSVKSATAPAVSCVA----ADARTVKWVPPTESNLKMNVDAALDSSRNKIGIGVIIR 1252
Query: 306 DHAGKCLVASAKCVSFILESSAAEALALLHGMRLVVELDLKVTKIEIDAKIIVEAVLNDR 365
D G+ + A +K V +S EA A+ G++ +L L+ +E D ++V A+ +
Sbjct: 1253 DSTGRVIAAMSKPVVGNFKSQEMEAKAMFWGLQWAKQLQLQPHCVETDCLMLVHALQGKQ 1312
Query: 366 WRKSSLGTIIGEIRELLFSQCFKDLAFIPRNRNQVANGVAKWAVKNGCEC 411
+ SS ++ +I L S ++ + R+ NQ A+G+AK A++ +C
Sbjct: 1313 SQLSSFHDLVEDISYHLSSFSNACISHVRRDANQAAHGLAKQALQLDNDC 1353
BLAST of Sed0027430 vs. NCBI nr
Match:
XP_030496634.1 (uncharacterized protein LOC115712492 [Cannabis sativa])
HSP 1 Score: 208.8 bits (530), Expect = 1.0e-49
Identity = 121/418 (28.95%), Postives = 194/418 (46.41%), Query Frame = 0
Query: 6 WIPRAHSFKLATIPRREDMHRCVGDFISNEGNWDIQKLESMLWPVDIEIVLSVPICNSRT 65
WIP FK + + M V FI+++ W+I L +D++ ++++P+ +T
Sbjct: 751 WIPGFTDFKPVSFNGADTM--TVSHFITDQREWNISLLNQYFQSIDVDKIVTIPLSFFQT 810
Query: 66 PYGWMWHFSRDGVFSVKSAYKLCISSKEAEATSCSGVELDWWRNFWATPIPSKVRILIWR 125
+WH + G ++V S + L + E + T S WW+ FW +PSKV+I WR
Sbjct: 811 NDRLIWHHTTTGCYTVNSGFHLAENLAENQQTHASSSHSTWWKTFWNLELPSKVKIFAWR 870
Query: 126 VFHNFLPVAQNLFARHIIQSPNCISCNKV-ESALHTFFGCRRLKAFWKGLLPVALPPIDY 185
V N LPVA L R +I S C CN ES H F C + W+ +
Sbjct: 871 VMQNALPVATGLVRRKVIDSATCSLCNNAWESVGHALFNCTTARKVWRDTKFTIDHTHTH 930
Query: 186 NGNIKDLLFFLGSKLPQQSFALLCVGMWAAWNDRNSLLRGEKIMPFEDRILWVLDYLREF 245
N D L L S +Q L+ MWA W++RN ++ G D + +L ++
Sbjct: 931 NMYNGDYLIHLSSLHSKQDLELIICTMWAIWHERNKVIHGGVSKSSHDIASFASTHLHQY 990
Query: 246 QAV--------NNINGPKTKLASRTE---------IADEEFCWCPPSGDDLTLNVDATCA 305
Q N+ N + AS +E ++ + W PP L +NVDA
Sbjct: 991 QRARTKNQQQFNHCNAHTSSSASASENISASTSQQRSNSDTSWSPPGITGLKINVDAAVN 1050
Query: 306 EDRFRVGFGAVVRDHAGKCLVASAKCVSFILESSAAEALALLHGMRLVVELDLKVTKIEI 365
+++ +G GA++RDH G + A +K V S EA AL H + ++L L +T +E
Sbjct: 1051 QEKKILGVGAIIRDHHGSVIAAISKPVQGCFRSDEMEAKALFHCLNWAMQLQLHITHVET 1110
Query: 366 DAKIIVEAVLNDRWRKSSLGTIIGEIRELLFSQCFKDLAFIPRNRNQVANGVAKWAVK 406
DA + A+ + SS +I ++ LL ++ + RN NQ A+G+AK+A++
Sbjct: 1111 DALRVSSALNSPFPNLSSFNDLIMDVSCLLSFFSGVTISHVKRNANQAAHGLAKYALE 1166
BLAST of Sed0027430 vs. NCBI nr
Match:
XP_030509188.1 (uncharacterized protein LOC115723863 [Cannabis sativa])
HSP 1 Score: 200.3 bits (508), Expect = 3.5e-47
Identity = 119/399 (29.82%), Postives = 192/399 (48.12%), Query Frame = 0
Query: 23 DMHRCVGDFISNEGNWDIQKLESMLWPVDIEIVLSVPICNSRTPYGWMWHFSRDGVFSVK 82
D + V D I+ + WD+ L + D++ +LS+P+ +W S G+++VK
Sbjct: 927 DPNLLVADLITEQRQWDLISLRANFSQPDVDRILSIPLSLFPHDDAMIWSHSFTGIYNVK 986
Query: 83 SAYKLCISSKEAEATSCSGVELDWWRNFWATPIPSKVRILIWRVFHNFLPVAQNLFARHI 142
S Y+L +S E + T+ S +WW FW +P KVRI +W+VFH+ LPVA LF RHI
Sbjct: 987 SGYQLAVSYAEQDDTASSHSMENWWSTFWKMKLPPKVRIFVWKVFHSTLPVAAELFRRHI 1046
Query: 143 IQSPNCISCNKVESAL-HTFFGCRRLKAFWKGLLPVALPPIDYN----GNIKDLLFFLGS 202
SP+C CN E ++ H F C R KA W+ ++ ID++ D+L L +
Sbjct: 1047 ATSPHCSICNSAEESINHALFDCPRAKAVWE----LSSLHIDFHTLRQSASADILLHLST 1106
Query: 203 KLPQQSFALLCVGMWAAWNDRNSLLRGEKIMPFEDRILWVLDYLREFQAVNNINGPKT-- 262
L F L V W W++RN++ G + + + YL EFQ T
Sbjct: 1107 ALSTSEFELFLVLCWCNWHERNAIYHGNTVRSSQAVASYAPSYLAEFQNARAKRSQPTPI 1166
Query: 263 KLASRTEIADEEFC----WCPPSGDDLTLNVDATCAEDRFRVGFGAVVRDHAGKCLVASA 322
+A+ EF W P L LN DA + R +VG GA +R+ G + A +
Sbjct: 1167 SIAATDPRPSSEFTHAPKWTAPPQGRLKLNTDAAIDKARNKVGIGATLRNSDGFIVAAIS 1226
Query: 323 KCVSFILESSAAEALALLHGMRLVVELDLKVTKIEIDAKIIVEAVLNDRWRKSSLGTIIG 382
K + ++ EA+ L + ++ +L V IE D+ ++V+ +L+ + S+ I+
Sbjct: 1227 KPLLGNYKAEEMEAIGLALSLNWLISNNLSVDFIETDSLLVVQGLLSSQSYLSAFHAILN 1286
Query: 383 EIRELLFSQCFKDLAFIPRNRNQVANGVAKWAVKNGCEC 411
I L+ + + R+ N A+ +AK+A+ EC
Sbjct: 1287 NINFLVSFFPRAQINHVFRSANTYAHTLAKYALTVDTEC 1321
BLAST of Sed0027430 vs. ExPASy Swiss-Prot
Match:
P0C2F6 (Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana OX=3702 GN=At1g65750 PE=3 SV=1)
HSP 1 Score: 78.2 bits (191), Expect = 2.7e-13
Identity = 76/344 (22.09%), Postives = 136/344 (39.53%), Query Frame = 0
Query: 71 WHFSRDGVFSVKSAYKLCISSKEAEATSCSGVELDWWRNFWATPIPSKVRILIWRVFHNF 130
W FS+DG FSV+SAY++ + S ++ W +P +V+ +W V +
Sbjct: 257 WKFSQDGQFSVRSAYEMLTVDEVPRPNMAS-----FFNCLWKVRVPERVKTFLWLVGNQA 316
Query: 131 LPVAQNLFARHIIQSPNCISC-NKVESALHTFFGCRRLKAFWKGLLPVALPPIDYNGNIK 190
+ + RH+ S C C VES LH C W ++P ++ ++
Sbjct: 317 VMTEEERHRRHLSASNVCQVCKGGVESMLHVLRDCPAQLGIWVRVVPQRRQQGFFSKSLF 376
Query: 191 DLLF-FLGSKLPQQSF---ALLCVGMWAAWNDRNSLLRGEKIMPFEDRILWVLDYLREFQ 250
+ L+ LG + + + V +W W R + GE DR+ +V ++ E
Sbjct: 377 EWLYDNLGDRSGCEDIPWSTIFAVIIWWGWKWRCGNIFGEN-TKCRDRVKFVKEWAVEVY 436
Query: 251 AVNNINGPKTKLASRTEIADEEFC-WCPPSGDDLTLNVDATCAEDRFRVGFGAVVRDHAG 310
++ N L T+ E W P + +N D + G V+RD G
Sbjct: 437 RAHSGN----VLVGITQPRVERMIGWVSPCVGWVKVNTDGASRGNPGLASAGGVLRDCTG 496
Query: 311 KCLVASAKCVSFIL-----ESSAAEALALLHGMRLVVELDLKVTKIEIDAKIIVEAVLND 370
A C F L + AE + +G+ E + ++E+D+++IV +
Sbjct: 497 ------AWCGGFSLNIGRCSAPQAELWGVYYGLYFAWEKKVPRVELEVDSEVIVGFLKTG 556
Query: 371 RWRKSSLGTIIGEIRELLFSQCFKDLAFIPRNRNQVANGVAKWA 404
L ++ L + + R N++A+G+A +A
Sbjct: 557 ISDSHPLSFLVRLCHGFLQKDWLVRIVHVYREANRLADGLANYA 584
BLAST of Sed0027430 vs. ExPASy TrEMBL
Match:
A0A6J1DX30 (uncharacterized protein LOC111024874 OS=Momordica charantia OX=3673 GN=LOC111024874 PE=4 SV=1)
HSP 1 Score: 214.5 bits (545), Expect = 8.8e-52
Identity = 117/406 (28.82%), Postives = 195/406 (48.03%), Query Frame = 0
Query: 2 FDFPWIPRAHSFKLATIPRREDMHRCVGDFISNEGNWDIQKLESMLWPVDIEIVLSVPIC 61
F PW+PR +FK + V FI+ +GNWD+ + D +++LS+PI
Sbjct: 1028 FSDPWLPRPTTFKPLRF-NNGALDTTVASFITADGNWDVTSISHSFCNEDRDLILSMPIS 1087
Query: 62 NSRTPYGWMWHFSRDGVFSVKSAYKLCISSKEAEATSCSGVELDWWRNFWATPIPSKVRI 121
+ W+WH+ + G +SV+S YKL + K ++ + W + W +P+K++I
Sbjct: 1088 SYNLQDSWLWHYDKRGNYSVRSGYKLYMHLKCNATSASTNYRGTQWNSIWKLTVPTKIKI 1147
Query: 122 LIWRVFHNFLPVAQNLFARHIIQSPNCISC-NKVESALHTFFGCRRLKAFWKGLLP-VAL 181
IWR H +P AQNL R I + P C C ++ ES +H FF C+R + W+ L P +
Sbjct: 1148 FIWRSAHEHIPTAQNLLLRGIGELPACTICGDRRESIIHAFFHCKRARQIWRTLFPFLTC 1207
Query: 182 PPIDYNGNIKDLLFFLGSKLPQQSFALLCVGMWAAWNDRNSLLRGEKIMPFEDRILWVLD 241
+ N + +L L +L + L + W WNDRNSL+ G+++ P E + W+
Sbjct: 1208 LSAEDNISFLELWSSLTEQLEPKDLNLAAITGWGIWNDRNSLIHGKQVSPVEFKCEWLTP 1267
Query: 242 YL-REFQAVNNINGPKTKLASRTEIADEEFCWCPPSGDDLTLNVDATCAEDRFRVGFGAV 301
+L QA + P+T+ R + W P S L LN DA C FG +
Sbjct: 1268 FLDSHSQAQMSNYSPRTQSNHRPVVQ----YWRPSSSVSLKLNTDAACR--GASTSFGCI 1327
Query: 302 VRDHAGKCLVASAKCVSFILESSAAEALALLHGMRLVVELDLKVTKIEIDAKIIVEAVLN 361
+RD + + A++ V F L AE +L G++ + ++E D+ + ++ + N
Sbjct: 1328 IRDSSCSLVAATSIRVPFPLSPLLAEIRCILEGLKFAAASNFTHLEVESDSLLAIQLIRN 1387
Query: 362 DRWRKSSLGTIIGEIRELLFSQCFKDLAFIPRNRNQVANGVAKWAV 405
+ + + EI+ L F + R N+ A+G+AKW +
Sbjct: 1388 EIHTRGDEQNWVMEIQALTCCFAFISFSHSSRQCNRAAHGLAKWGI 1426
BLAST of Sed0027430 vs. ExPASy TrEMBL
Match:
A0A803QH07 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)
HSP 1 Score: 211.5 bits (537), Expect = 7.4e-51
Identity = 124/413 (30.02%), Postives = 191/413 (46.25%), Query Frame = 0
Query: 5 PWIPRAHSFKLATIPRREDMHRCVGDFISNEGNWDIQKLESMLWPVDIEIVLSVPICNSR 64
PWIP SF+ + + V I++ W+ L P+D+E +LS+P+
Sbjct: 1410 PWIPSHDSFRPVSYCGPPQLP--VSALINDNREWNSTLLNDFFQPIDVEKILSIPLSYFA 1469
Query: 65 TPYGWMWHFSRDGVFSVKSAYKLCISSKEAEATSCSGVELDWWRNFWATPIPSKVRILIW 124
T +WH S G ++VKS + L ++ +S S DWW+ FW +P K+RI W
Sbjct: 1470 TQDRLIWHHSTSGSYNVKSGFHLATHLEDQLQSSSSDANRDWWKFFWNLSLPPKIRIFAW 1529
Query: 125 RVFHNFLPVAQNLFARHIIQSPNCISCNKV-ESALHTFFGCRRLKAFWKG---LLPVALP 184
+V + LPVA LF R +I S C CN ES H FGC K WK ++
Sbjct: 1530 KVIQHILPVAAALFKRKVIDSAACSLCNSSWESIGHALFGCSHAKNIWKESKFIIDFNKA 1589
Query: 185 PIDYNGNIKDLLFFLGSKLPQQSFALLCVGMWAAWNDRNSLLRGEKIMPFEDRILWVLDY 244
+NG D L +L + Q+ F L +W W DRN + G K I + +
Sbjct: 1590 QSMFNG---DYLHYLSAVYTQEDFELFICLLWGIWTDRNRVFHGGKARISSSIITYTTGF 1649
Query: 245 LREFQAVNNINGPKTKLA---------SRTEIADEEFCWCPPSGDDLTLNVDATCAEDRF 304
R++ +++ T A S + + W PP+ + LNVDA D+
Sbjct: 1650 HRDYSRTKHLSSQSTAAAAELSSTHQNSTPQTMHQHTPWTPPNINGFKLNVDAASNSDQQ 1709
Query: 305 RVGFGAVVRDHAGKCLVASAKCVSFILESSAAEALALLHGMRLVVELDLKVTKIEIDAKI 364
++G GA++R H G + A +K V S EA AL H + V + L +T IE DA
Sbjct: 1710 KLGIGAIIRSHDGMVVAALSKVVQGSFRSDEMEAKALFHALNWVSQSQLSITHIETDALR 1769
Query: 365 IVEAVLNDRWRKSSLGTIIGEIRELLFSQCFKDLAFIPRNRNQVANGVAKWAV 405
+ A+ + + S +I +IR LL ++ R+ NQ A+G+A++A+
Sbjct: 1770 VSTALNSTKSDLSCFSDLIFDIRCLLSFFPSVLVSHAKRSANQAAHGLARFAL 1817
BLAST of Sed0027430 vs. ExPASy TrEMBL
Match:
A0A803Q8I6 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)
HSP 1 Score: 211.5 bits (537), Expect = 7.4e-51
Identity = 122/413 (29.54%), Postives = 201/413 (48.67%), Query Frame = 0
Query: 6 WIPRAHSFKLATIPRREDMHRCVGDFISNEGNWDIQKLESMLWPVDIEIVLSVPICNSRT 65
WIP FK + + + V +FI+N+ W+I L +D++ ++++P+ +
Sbjct: 416 WIPGYTDFKPVSFNGADSL--TVSNFITNQREWNIPLLNQYFQSIDVDRIVTIPLSFFPS 475
Query: 66 PYGWMWHFSRDGVFSVKSAYKLCISSKEAEATSCSGVELDWWRNFWATPIPSKVRILIWR 125
+WH + G ++V S + L + E + T+ S WWR FW+ +P KV+I WR
Sbjct: 476 NDRLIWHHTITGCYTVNSGFHLAENLAENQETNGSNSRSTWWRTFWSLNLPCKVKIFAWR 535
Query: 126 VFHNFLPVAQNLFARHIIQSPNCISCNKV-ESALHTFFGCRRLKAFWKGLLPVALPPIDY 185
V N LPVA +L R +I S C CN ES H F C + + W+ +
Sbjct: 536 VMQNALPVATSLVRRKVIDSVTCSLCNNAWESIGHALFNCTKARKVWRETKFTIDHTHTH 595
Query: 186 NGNIKDLLFFLGSKLPQQSFALLCVGMWAAWNDRNSLLRGEKIMPFEDRILWVLDYLREF 245
N D L L S +Q F L+ MWA W+DRN +++G P + + +L ++
Sbjct: 596 NMYNGDYLIHLSSLHSKQDFELIVCTMWAIWHDRNKVIQGGLSKPSQVIAYFASAHLEQY 655
Query: 246 ---------QAVN---NINGPKTKLASRTEIADEEFCWCPPSGDDLTLNVDATCAEDRFR 305
Q +N + + T + + +I+D W PPS L +NVD ++R
Sbjct: 656 YRAKTKNQQQYINCNVHTSNDSTPVHFQRQISDVP--WSPPSISGLKINVDVVVNQERKV 715
Query: 306 VGFGAVVRDHAGKCLVASAKCVSFILESSAAEALALLHGMRLVVELDLKVTKIEIDAKII 365
+G GA+VRDH G + A +K V S EA AL H + ++L L++T ++ DA +
Sbjct: 716 LGVGAIVRDHQGSVVAALSKPVQGCFRSDEMEAKALFHSLNWALQLQLQLTNVDTDALRV 775
Query: 366 VEAVLNDRWRKSSLGTIIGEIRELLFSQCFKDLAFIPRNRNQVANGVAKWAVK 406
A+ + SS +I ++ LL ++ + RN NQ A+G+AK+A++
Sbjct: 776 SSAINSLSKNLSSFNDLIMDVSCLLSFFSGVTISHVKRNANQAAHGLAKYALE 824
BLAST of Sed0027430 vs. ExPASy TrEMBL
Match:
A0A803PIB6 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)
HSP 1 Score: 210.7 bits (535), Expect = 1.3e-50
Identity = 125/410 (30.49%), Postives = 200/410 (48.78%), Query Frame = 0
Query: 6 WIPRAHSFKLATIPRREDMHRCVGDFISNEGNWDIQKLESMLWPVDIEIVLSVPICNSRT 65
WIP FK + V D+I++ WD++ L + P DI+ +L++P+ + T
Sbjct: 1413 WIPGNEYFK--PLRFTGSCSNLVADYITDTREWDLELLHNDFSPADIDRILTIPLSYNST 1472
Query: 66 PYGWMWHFSRDGVFSVKSAYKLCISSKEAEATSCSGVELDWWRNFWATPIPSKVRILIWR 125
W WH+ G ++VKS Y L S + + +S S + WW+ FW +PSKVRI WR
Sbjct: 1473 RDRWRWHYDSSGDYTVKSGYNLACSLENKDHSSSSTSQEAWWQLFWGLNLPSKVRIFGWR 1532
Query: 126 VFHNFLPVAQNLFARHIIQSPNCISCNKV-ESALHTFFGCRRLKAFWKGL---LPVALPP 185
V ++ LPVAQNLF R +I S C C++ ES H F C K+ W+ L
Sbjct: 1533 VINSALPVAQNLFHRKVITSATCSLCSRAWESIGHALFSCCHAKSVWQHTSFQLDFTKAS 1592
Query: 186 IDYNGNIKDLLFFLGSKLPQQSFALLCVGMWAAWNDRNSLLRGEKIMPFEDRILWVLDYL 245
+G D L FL + L + L MW W+DRN+ + +++ YL
Sbjct: 1593 FMKDG---DYLLFLSTILTKSELEKLFCTMWFIWSDRNNYIHCKQLKHPMAISSQAEAYL 1652
Query: 246 REFQAVNNINGPKTKLASRTEIADEEFC-WCPPSGDDLTLNVDATCAEDRFRVGFGAVVR 305
F +V + P + AD W PP+ +L +NVDA R ++G G ++R
Sbjct: 1653 ANFHSVKSATAPAVSCVA----ADARTVKWVPPTESNLKMNVDAALDSSRNKIGIGVIIR 1712
Query: 306 DHAGKCLVASAKCVSFILESSAAEALALLHGMRLVVELDLKVTKIEIDAKIIVEAVLNDR 365
D G+ + A +K V +S EA A+ G++ +L L+ +E D ++V A+ +
Sbjct: 1713 DSTGRVIAAMSKPVVGNFKSQEMEAKAMFWGLQWAKQLQLQPHCVETDCLMLVHALQGKQ 1772
Query: 366 WRKSSLGTIIGEIRELLFSQCFKDLAFIPRNRNQVANGVAKWAVKNGCEC 411
+ SS ++ +I L S ++ + R+ NQ A+G+AK A++ +C
Sbjct: 1773 SQLSSFHDLVEDISYHLSSFSNACISHVRRDANQAAHGLAKQALQLDNDC 1813
BLAST of Sed0027430 vs. ExPASy TrEMBL
Match:
A0A803QHU6 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)
HSP 1 Score: 209.5 bits (532), Expect = 2.8e-50
Identity = 127/412 (30.83%), Postives = 201/412 (48.79%), Query Frame = 0
Query: 5 PWIPRAHSFKLATIPRREDMHRCVGDFISNEGNWDIQKLESMLWPVDIEIVLSVPICNSR 64
PWI + FK + + V FI+ E W++ L + P+D + +L++P+
Sbjct: 818 PWIQGFNEFKPVSYLGSTSLP--VSSFITEERIWNVPMLNTYFHPIDSDRILTIPLSFFP 877
Query: 65 TPYGWMWHFSRDGVFSVKSAYKLCISSKEAEATSCSGVELDWWRNFWATPIPSKVRILIW 124
+WHF+ +G+++V+S + L S +E +S S + DWW+ FW +P K+RI +W
Sbjct: 878 DMDRLIWHFTSNGLYTVQSGFHLASSLEEQHCSSTSNNQRDWWKYFWNLNLPPKIRIFVW 937
Query: 125 RVFHNFLPVAQNLFARHIIQSPNCISC-NKVESALHTFFGCRRLKAFWK---GLLPVALP 184
+V HN LP A LF + ++ S C C + ES H FGC+ KA WK L ++
Sbjct: 938 KVLHNILPTAAALFKKKVLTSAECSLCASNWESIGHALFGCKHAKAIWKISTFQLDLSKA 997
Query: 185 PIDYNGNIKDLLFFLGSKLPQQSFALLCVGMWAAWNDRNSLLRGEKIMPFEDRILWVLDY 244
+NG D L L + L QQ F LL +W W DRN ++ G I + + +
Sbjct: 998 QNMFNG---DYLQNLSTILSQQDFELLLCILWGIWTDRNKVVHGGSSRLHAAIINYAIRF 1057
Query: 245 LREFQAVNNINGP----KTKLASRTEIADEEFC--WCPPSGDDLTLNVDATCAEDRFRVG 304
+F N+ P K + T A + W PP + LNVDA D+ ++G
Sbjct: 1058 HEDFIRAKNVVPPAAVCSNKQPATTPSATIQHVAKWKPPLYNGFKLNVDAATNVDQKKLG 1117
Query: 305 FGAVVRDHAGKCLVASAKCVSFILESSAAEALALLHGMRLVVELDLKVTKIEIDAKIIVE 364
GA++RDH G + A +K S EA AL H + ++ L +T IE DA +
Sbjct: 1118 VGAIIRDHNGVVVAAYSKVAQGNFRSDEMEAKALFHALNWALQHQLAITHIETDALRVST 1177
Query: 365 AVLNDRWRKSSLGTIIGEIRELL--FSQCFKDLAFIPRNRNQVANGVAKWAV 405
A+ + S II ++R LL F Q + + R+ NQ A+G+A++++
Sbjct: 1178 ALNSTSKDLSCFSDIIMDVRCLLSFFPQVL--VTHVKRSANQAAHGLARFSL 1222
BLAST of Sed0027430 vs. TAIR 10
Match:
AT3G26855.1 (RNA-directed DNA polymerase (reverse transcriptase)-related family protein )
HSP 1 Score: 54.3 bits (129), Expect = 2.9e-07
Identity = 21/60 (35.00%), Postives = 32/60 (53.33%), Query Frame = 0
Query: 105 DWWRNFWATPIPSKVRILIWRVFHNFLPVAQNLFARHIIQSPNCISCNKVESALHTFFGC 164
+W + W+ I K+++LIW+ +N LPV L +R+I P C C E+ H F C
Sbjct: 4 NWIGDIWSLKISPKIKLLIWKALNNALPVGAQLLSRNISIEPFCTRCRDFETITHILFNC 63
BLAST of Sed0027430 vs. TAIR 10
Match:
AT2G22440.1 (BEST Arabidopsis thaliana protein match is: Ribonuclease H-like superfamily protein (TAIR:AT4G29090.1); Has 208 Blast hits to 191 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 208; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )
HSP 1 Score: 51.6 bits (122), Expect = 1.9e-06
Identity = 24/82 (29.27%), Postives = 41/82 (50.00%), Query Frame = 0
Query: 5 PWIPRAHSFKLATIPRREDMHRCVGDFISNEGN-WDIQKLESMLWPVDIEIVLSVPICNS 64
PWIP + +I D V D I N W + +L++++ PVDI ++L + +
Sbjct: 9 PWIPTILARPAKSILNIRDSLLYVNDLIDQNTNLWKLDRLQALIDPVDIPLILGIRPSRT 68
Query: 65 RTPYGWMWHFSRDGVFSVKSAY 86
G+ W ++ G ++VKS Y
Sbjct: 69 YLSDGFSWSHTKSGNYTVKSGY 90
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
P0C2F6 | 2.7e-13 | 22.09 | Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana OX=3702 GN=At1... | [more] |
Match Name | E-value | Identity | Description | |
A0A6J1DX30 | 8.8e-52 | 28.82 | uncharacterized protein LOC111024874 OS=Momordica charantia OX=3673 GN=LOC111024... | [more] |
A0A803QH07 | 7.4e-51 | 30.02 | Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1 | [more] |
A0A803Q8I6 | 7.4e-51 | 29.54 | Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1 | [more] |
A0A803PIB6 | 1.3e-50 | 30.49 | Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1 | [more] |
A0A803QHU6 | 2.8e-50 | 30.83 | Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1 | [more] |
Match Name | E-value | Identity | Description | |
AT3G26855.1 | 2.9e-07 | 35.00 | RNA-directed DNA polymerase (reverse transcriptase)-related family protein | [more] |
AT2G22440.1 | 1.9e-06 | 29.27 | BEST Arabidopsis thaliana protein match is: Ribonuclease H-like superfamily prot... | [more] |