Sed0027430 (gene) Chayote v1

Overview
NameSed0027430
Typegene
OrganismSechium edule (Chayote v1)
DescriptionBEST Arabidopsis thaliana protein match is: Ribonuclease H-like superfamily protein .
LocationLG02: 36522514 .. 36524938 (+)
RNA-Seq ExpressionSed0027430
SyntenySed0027430
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTTGATTTTCCTTGGATTCCAAGGGCCCATTCCTTCAAATTAGCTACTATTCCAAGAAGGGAAGATATGCATCGCTGTGTGGGAGATTTTATTTCTAATGAAGGAAATTGGGATATTCAGAAACTTGAGTCTATGCTTTGGCCAGTTGATATTGAGATTGTATTATCAGTTCCCATATGCAATTCTAGAACCCCTTATGGTTGGATGTGGCATTTTTCTAGAGATGGGGTCTTTTCTGTCAAAAGTGCTTACAAACTATGCATAAGTAGCAAAGAAGCAGAAGCTACCTCTTGTTCTGGGGTTGAGCTAGATTGGTGGAGGAATTTTTGGGCTACGCCAATCCCTTCGAAAGTAAGAATATTAATTTGGAGAGTTTTCCATAATTTTCTTCCTGTTGCCCAAAATCTTTTTGCTAGACATATTATTCAGTCCCCTAACTGCATCAGTTGTAATAAAGTGGAGTCAGCTCTTCATACTTTTTTTGGATGCAGGCGGTTGAAAGCCTTTTGGAAAGGTCTTTTGCCAGTAGCTCTGCCCCCGATTGATTATAACGGGAATATTAAGGATCTCTTGTTTTTTTTAGGAAGCAAATTGCCTCAACAAAGTTTTGCCCTTCTTTGTGTTGGAATGTGGGCAGCCTGGAATGATCGGAACAGTTTATTAAGGGGGGAGAAGATAATGCCGTTTGAAGACAGAATTTTATGGGTTTTAGATTACCTGAGAGAATTTCAAGCAGTAAATAATATCAATGGGCCAAAAACCAAATTGGCAAGCAGAACCGAAATAGCTGATGAAGAGTTTTGTTGGTGTCCTCCATCTGGGGACGATCTTACCCTTAATGTTGATGCAACTTGTGCAGAAGATCGTTTTCGTGTTGGTTTTGGGGCCGTTGTCCGTGATCACGCTGGAAAGTGCTTGGTAGCCTCAGCAAAGTGTGTCTCTTTTATATTAGAGTCTTCTGCAGCGGAAGCTTTAGCTCTCCTCCATGGTATGAGATTGGTGGTTGAATTGGATCTGAAGGTGACGAAAATTGAGATAGATGCAAAAATAATTGTTGAAGCTGTGTTGAATGATCGTTGGAGAAAGTCTTCGTTGGGAACCATTATTGGGGAAATTAGGGAGTTGTTATTTTCTCAATGTTTTAAGGATTTAGCTTTTATTCCCAGAAATAGAAATCAGGTTGCAAATGGTGTTGCTAAATGGGCCGTGAAAAATGGTTTGTCTTTAATTTGGACAATCTGTTCCCCCCATGGCTGGAAAGTCTCCTTCTGTATGATGGCTGTTTTGAGCCTTCTGTGGGCTGAGTTTGCGTATAAAATCATGTTTGATTTAAAAAAAAAAAAAAAAAAAAACAATCCAACAAATTATAACACTTCTTTACCATTTAAATTTAATATTGTTTTGACAATTAAAATCTAATATTCTATAACAAATCTAAGAACCTTGACCGAATATCTTCGTACTTAAATTTGAAAAAACTGTTAAAAGGATTTTGACCAACTTGTAAAATATCAAGTATTATTGTTTAAAGATAACAAAACAGACATTTTTATTCATGTAAAAAAAAATTAAAATGAGAGACGACGTTTTACTACATATTACATTCTGTAGTATAGATAATTCAACCACCAAAATGAATATTTTGATATTGACTTAATGAAACCAAAAAAAAAATCGTCAACTCAGTTATCGCTCATGTAGTTGTGATGAATGCTCCGATAGGGTGTGTAAGTGTACTTAATACGAGACAAATGGTTAAACAAAAAAAGAAAACCCTAAAATTCTTCCTCCATTGTATACACATGGTACGTATTTGTTGTGATTTCAAAAAAAAAACATATTTGTATGGATTAGCACGTATTGTTATTGTGTTGTAATTCTAATACACATTCTCGTCCCAAACCCCTAATACAAACGTGATAGAAGTAGCTTCCATTGAGGACCATGCTCCTTTTCCTTGAAAGGAACTCCAAAAAATATGCTCGTAAAATAGTAAAGCAGGCAAGCATACAATCAATGGAAGATACGTAGGGTCCACACAACCCACGACAAGGAACCCTTACCTGAAAATTGAAAATAGAATAGAACAAACAATATGTATGCTCATTGAGCTATAGATAACCAACACGAATACTCAACCTAGTCAGACAGTAACAATAATAAATAACCAAACAAACACTAACTAACTAGAATATCCAAATAAAACAAGCAAGGAACCACAGGGACAGGCATTTACCCAAAAACAAAGAACTGGAGGCTCAGCAAGCAAAGGCTCGATTACGACAAGGACACAGGCTGTGAGTGTAGCAGCAAGGCAAGCGACGTGGGTGGGCATGCACGGCGAAGTGGCTCGTCGGAGCAGCATGTGCGTGTTGCTGCGGGGCTAAGTGCAGCGAGTAGCACGACGAGACGAGCTGGGTGA

mRNA sequence

ATGTTTGATTTTCCTTGGATTCCAAGGGCCCATTCCTTCAAATTAGCTACTATTCCAAGAAGGGAAGATATGCATCGCTGTGTGGGAGATTTTATTTCTAATGAAGGAAATTGGGATATTCAGAAACTTGAGTCTATGCTTTGGCCAGTTGATATTGAGATTGTATTATCAGTTCCCATATGCAATTCTAGAACCCCTTATGGTTGGATGTGGCATTTTTCTAGAGATGGGGTCTTTTCTGTCAAAAGTGCTTACAAACTATGCATAAGTAGCAAAGAAGCAGAAGCTACCTCTTGTTCTGGGGTTGAGCTAGATTGGTGGAGGAATTTTTGGGCTACGCCAATCCCTTCGAAAGTAAGAATATTAATTTGGAGAGTTTTCCATAATTTTCTTCCTGTTGCCCAAAATCTTTTTGCTAGACATATTATTCAGTCCCCTAACTGCATCAGTTGTAATAAAGTGGAGTCAGCTCTTCATACTTTTTTTGGATGCAGGCGGTTGAAAGCCTTTTGGAAAGGTCTTTTGCCAGTAGCTCTGCCCCCGATTGATTATAACGGGAATATTAAGGATCTCTTGTTTTTTTTAGGAAGCAAATTGCCTCAACAAAGTTTTGCCCTTCTTTGTGTTGGAATGTGGGCAGCCTGGAATGATCGGAACAGTTTATTAAGGGGGGAGAAGATAATGCCGTTTGAAGACAGAATTTTATGGGTTTTAGATTACCTGAGAGAATTTCAAGCAGTAAATAATATCAATGGGCCAAAAACCAAATTGGCAAGCAGAACCGAAATAGCTGATGAAGAGTTTTGTTGGTGTCCTCCATCTGGGGACGATCTTACCCTTAATGTTGATGCAACTTGTGCAGAAGATCGTTTTCGTGTTGGTTTTGGGGCCGTTGTCCGTGATCACGCTGGAAAGTGCTTGGTAGCCTCAGCAAAGTGTGTCTCTTTTATATTAGAGTCTTCTGCAGCGGAAGCTTTAGCTCTCCTCCATGGTATGAGATTGGTGGTTGAATTGGATCTGAAGGTGACGAAAATTGAGATAGATGCAAAAATAATTGTTGAAGCTGTGTTGAATGATCGTTGGAGAAAGTCTTCGTTGGGAACCATTATTGGGGAAATTAGGGAGTTGTTATTTTCTCAATGTTTTAAGGATTTAGCTTTTATTCCCAGAAATAGAAATCAGGTTGCAAATGGTGTTGCTAAATGGGCCGTGAAAAATGGCTGTGAGTGTAGCAGCAAGGCAAGCGACGTGGGTGGGCATGCACGGCGAAGTGGCTCGTCGGAGCAGCATGTGCGTGTTGCTGCGGGGCTAAGTGCAGCGAGTAGCACGACGAGACGAGCTGGGTGA

Coding sequence (CDS)

ATGTTTGATTTTCCTTGGATTCCAAGGGCCCATTCCTTCAAATTAGCTACTATTCCAAGAAGGGAAGATATGCATCGCTGTGTGGGAGATTTTATTTCTAATGAAGGAAATTGGGATATTCAGAAACTTGAGTCTATGCTTTGGCCAGTTGATATTGAGATTGTATTATCAGTTCCCATATGCAATTCTAGAACCCCTTATGGTTGGATGTGGCATTTTTCTAGAGATGGGGTCTTTTCTGTCAAAAGTGCTTACAAACTATGCATAAGTAGCAAAGAAGCAGAAGCTACCTCTTGTTCTGGGGTTGAGCTAGATTGGTGGAGGAATTTTTGGGCTACGCCAATCCCTTCGAAAGTAAGAATATTAATTTGGAGAGTTTTCCATAATTTTCTTCCTGTTGCCCAAAATCTTTTTGCTAGACATATTATTCAGTCCCCTAACTGCATCAGTTGTAATAAAGTGGAGTCAGCTCTTCATACTTTTTTTGGATGCAGGCGGTTGAAAGCCTTTTGGAAAGGTCTTTTGCCAGTAGCTCTGCCCCCGATTGATTATAACGGGAATATTAAGGATCTCTTGTTTTTTTTAGGAAGCAAATTGCCTCAACAAAGTTTTGCCCTTCTTTGTGTTGGAATGTGGGCAGCCTGGAATGATCGGAACAGTTTATTAAGGGGGGAGAAGATAATGCCGTTTGAAGACAGAATTTTATGGGTTTTAGATTACCTGAGAGAATTTCAAGCAGTAAATAATATCAATGGGCCAAAAACCAAATTGGCAAGCAGAACCGAAATAGCTGATGAAGAGTTTTGTTGGTGTCCTCCATCTGGGGACGATCTTACCCTTAATGTTGATGCAACTTGTGCAGAAGATCGTTTTCGTGTTGGTTTTGGGGCCGTTGTCCGTGATCACGCTGGAAAGTGCTTGGTAGCCTCAGCAAAGTGTGTCTCTTTTATATTAGAGTCTTCTGCAGCGGAAGCTTTAGCTCTCCTCCATGGTATGAGATTGGTGGTTGAATTGGATCTGAAGGTGACGAAAATTGAGATAGATGCAAAAATAATTGTTGAAGCTGTGTTGAATGATCGTTGGAGAAAGTCTTCGTTGGGAACCATTATTGGGGAAATTAGGGAGTTGTTATTTTCTCAATGTTTTAAGGATTTAGCTTTTATTCCCAGAAATAGAAATCAGGTTGCAAATGGTGTTGCTAAATGGGCCGTGAAAAATGGCTGTGAGTGTAGCAGCAAGGCAAGCGACGTGGGTGGGCATGCACGGCGAAGTGGCTCGTCGGAGCAGCATGTGCGTGTTGCTGCGGGGCTAAGTGCAGCGAGTAGCACGACGAGACGAGCTGGGTGA

Protein sequence

MFDFPWIPRAHSFKLATIPRREDMHRCVGDFISNEGNWDIQKLESMLWPVDIEIVLSVPICNSRTPYGWMWHFSRDGVFSVKSAYKLCISSKEAEATSCSGVELDWWRNFWATPIPSKVRILIWRVFHNFLPVAQNLFARHIIQSPNCISCNKVESALHTFFGCRRLKAFWKGLLPVALPPIDYNGNIKDLLFFLGSKLPQQSFALLCVGMWAAWNDRNSLLRGEKIMPFEDRILWVLDYLREFQAVNNINGPKTKLASRTEIADEEFCWCPPSGDDLTLNVDATCAEDRFRVGFGAVVRDHAGKCLVASAKCVSFILESSAAEALALLHGMRLVVELDLKVTKIEIDAKIIVEAVLNDRWRKSSLGTIIGEIRELLFSQCFKDLAFIPRNRNQVANGVAKWAVKNGCECSSKASDVGGHARRSGSSEQHVRVAAGLSAASSTTRRAG
Homology
BLAST of Sed0027430 vs. NCBI nr
Match: XP_022158377.1 (uncharacterized protein LOC111024874 [Momordica charantia])

HSP 1 Score: 214.5 bits (545), Expect = 1.8e-51
Identity = 117/406 (28.82%), Postives = 195/406 (48.03%), Query Frame = 0

Query: 2    FDFPWIPRAHSFKLATIPRREDMHRCVGDFISNEGNWDIQKLESMLWPVDIEIVLSVPIC 61
            F  PW+PR  +FK         +   V  FI+ +GNWD+  +       D +++LS+PI 
Sbjct: 1028 FSDPWLPRPTTFKPLRF-NNGALDTTVASFITADGNWDVTSISHSFCNEDRDLILSMPIS 1087

Query: 62   NSRTPYGWMWHFSRDGVFSVKSAYKLCISSKEAEATSCSGVELDWWRNFWATPIPSKVRI 121
            +      W+WH+ + G +SV+S YKL +  K    ++ +      W + W   +P+K++I
Sbjct: 1088 SYNLQDSWLWHYDKRGNYSVRSGYKLYMHLKCNATSASTNYRGTQWNSIWKLTVPTKIKI 1147

Query: 122  LIWRVFHNFLPVAQNLFARHIIQSPNCISC-NKVESALHTFFGCRRLKAFWKGLLP-VAL 181
             IWR  H  +P AQNL  R I + P C  C ++ ES +H FF C+R +  W+ L P +  
Sbjct: 1148 FIWRSAHEHIPTAQNLLLRGIGELPACTICGDRRESIIHAFFHCKRARQIWRTLFPFLTC 1207

Query: 182  PPIDYNGNIKDLLFFLGSKLPQQSFALLCVGMWAAWNDRNSLLRGEKIMPFEDRILWVLD 241
               + N +  +L   L  +L  +   L  +  W  WNDRNSL+ G+++ P E +  W+  
Sbjct: 1208 LSAEDNISFLELWSSLTEQLEPKDLNLAAITGWGIWNDRNSLIHGKQVSPVEFKCEWLTP 1267

Query: 242  YL-REFQAVNNINGPKTKLASRTEIADEEFCWCPPSGDDLTLNVDATCAEDRFRVGFGAV 301
            +L    QA  +   P+T+   R  +      W P S   L LN DA C        FG +
Sbjct: 1268 FLDSHSQAQMSNYSPRTQSNHRPVVQ----YWRPSSSVSLKLNTDAACR--GASTSFGCI 1327

Query: 302  VRDHAGKCLVASAKCVSFILESSAAEALALLHGMRLVVELDLKVTKIEIDAKIIVEAVLN 361
            +RD +   + A++  V F L    AE   +L G++     +    ++E D+ + ++ + N
Sbjct: 1328 IRDSSCSLVAATSIRVPFPLSPLLAEIRCILEGLKFAAASNFTHLEVESDSLLAIQLIRN 1387

Query: 362  DRWRKSSLGTIIGEIRELLFSQCFKDLAFIPRNRNQVANGVAKWAV 405
            +   +      + EI+ L     F   +   R  N+ A+G+AKW +
Sbjct: 1388 EIHTRGDEQNWVMEIQALTCCFAFISFSHSSRQCNRAAHGLAKWGI 1426

BLAST of Sed0027430 vs. NCBI nr
Match: XP_030502555.1 (uncharacterized protein LOC115717715 [Cannabis sativa])

HSP 1 Score: 211.8 bits (538), Expect = 1.2e-50
Identity = 125/409 (30.56%), Postives = 197/409 (48.17%), Query Frame = 0

Query: 6    WIPRAHSFKLATIPRR--EDMHRCVGDFISNEGNWDIQKLESMLWPVDIEIVLSVPICNS 65
            WIP    FK    P R     +  V  +I++   W+ + L     P D+E +L++P+  +
Sbjct: 953  WIPGHDFFK----PFRFTGPSNNLVAHYITDAREWNWELLHRDFSPADVEKILTIPLSYN 1012

Query: 66   RTPYGWMWHFSRDGVFSVKSAYKLCISSKEAEATSCSGVELDWWRNFWATPIPSKVRILI 125
                 W+WH+   G ++VKS Y L  S +  + TS SG +  WW+ FW   +PSKVRI  
Sbjct: 1013 SMSDCWIWHYECSGEYTVKSRYTLACSLENRDQTSSSGSQETWWKRFWGLTLPSKVRIFG 1072

Query: 126  WRVFHNFLPVAQNLFARHIIQSPNCISCNKV-ESALHTFFGCRRLKAFWKGL-LPVALPP 185
            W+V ++ LPVA NLF R +I S  C  C++V ES  H  F C   KA W+     +    
Sbjct: 1073 WKVINSALPVATNLFHRKVITSATCSLCSRVWESIGHALFSCCHAKAVWQNTGFQLDFQK 1132

Query: 186  IDYNGNIKDLLFFLGSKLPQQSFALLCVGMWAAWNDRNSLLRGEKIMPFEDRILWVLDYL 245
              Y  +  D L FL + L       L   MW  W+DRN+ + G+++            YL
Sbjct: 1133 ASYMKD-GDYLMFLSTILTNSELERLFCTMWFIWSDRNNFIHGKQLKQPMAISSQAEAYL 1192

Query: 246  REFQAVNNINGPKTKLASRTEIADEEFCWCPPSGDDLTLNVDATCAEDRFRVGFGAVVRD 305
              F   N++    T    R         W PP    L +NVDA     R ++G G ++RD
Sbjct: 1193 ANF---NSVQLQATPATFRVAADVNRVKWTPPPETKLKMNVDAAIDSSRSKIGMGVIIRD 1252

Query: 306  HAGKCLVASAKCVSFILESSAAEALALLHGMRLVVELDLKVTKIEIDAKIIVEAVLNDRW 365
             +G  + A +K      +S   EA A+  G++L  +L L++  +E D  ++V A+   + 
Sbjct: 1253 SSGSVVAAMSKPAVGNFKSQEMEAKAMFWGLQLAEQLQLQLHYVETDCLMLVTAINGAQS 1312

Query: 366  RKSSLGTIIGEIRELLFSQCFKDLAFIPRNRNQVANGVAKWAVKNGCEC 411
            + SS   ++ +I   L S     ++ + R+ NQ A+G+AK A++   +C
Sbjct: 1313 QHSSFHDLVKDISYHLSSSSNACISHVRRDANQAAHGLAKQALQLDNDC 1353

BLAST of Sed0027430 vs. NCBI nr
Match: XP_030497600.1 (uncharacterized protein LOC115713257 [Cannabis sativa])

HSP 1 Score: 210.7 bits (535), Expect = 2.6e-50
Identity = 125/410 (30.49%), Postives = 200/410 (48.78%), Query Frame = 0

Query: 6    WIPRAHSFKLATIPRREDMHRCVGDFISNEGNWDIQKLESMLWPVDIEIVLSVPICNSRT 65
            WIP    FK   +         V D+I++   WD++ L +   P DI+ +L++P+  + T
Sbjct: 953  WIPGNEYFK--PLRFTGSCSNLVADYITDTREWDLELLHNDFSPADIDRILTIPLSYNST 1012

Query: 66   PYGWMWHFSRDGVFSVKSAYKLCISSKEAEATSCSGVELDWWRNFWATPIPSKVRILIWR 125
               W WH+   G ++VKS Y L  S +  + +S S  +  WW+ FW   +PSKVRI  WR
Sbjct: 1013 RDRWRWHYDSSGDYTVKSGYNLACSLENKDHSSSSTSQEAWWQLFWGLNLPSKVRIFGWR 1072

Query: 126  VFHNFLPVAQNLFARHIIQSPNCISCNKV-ESALHTFFGCRRLKAFWKGL---LPVALPP 185
            V ++ LPVAQNLF R +I S  C  C++  ES  H  F C   K+ W+     L      
Sbjct: 1073 VINSALPVAQNLFHRKVITSATCSLCSRAWESIGHALFSCCHAKSVWQHTSFQLDFTKAS 1132

Query: 186  IDYNGNIKDLLFFLGSKLPQQSFALLCVGMWAAWNDRNSLLRGEKIMPFEDRILWVLDYL 245
               +G   D L FL + L +     L   MW  W+DRN+ +  +++            YL
Sbjct: 1133 FMKDG---DYLLFLSTILTKSELEKLFCTMWFIWSDRNNYIHCKQLKHPMAISSQAEAYL 1192

Query: 246  REFQAVNNINGPKTKLASRTEIADEEFC-WCPPSGDDLTLNVDATCAEDRFRVGFGAVVR 305
              F +V +   P     +    AD     W PP+  +L +NVDA     R ++G G ++R
Sbjct: 1193 ANFHSVKSATAPAVSCVA----ADARTVKWVPPTESNLKMNVDAALDSSRNKIGIGVIIR 1252

Query: 306  DHAGKCLVASAKCVSFILESSAAEALALLHGMRLVVELDLKVTKIEIDAKIIVEAVLNDR 365
            D  G+ + A +K V    +S   EA A+  G++   +L L+   +E D  ++V A+   +
Sbjct: 1253 DSTGRVIAAMSKPVVGNFKSQEMEAKAMFWGLQWAKQLQLQPHCVETDCLMLVHALQGKQ 1312

Query: 366  WRKSSLGTIIGEIRELLFSQCFKDLAFIPRNRNQVANGVAKWAVKNGCEC 411
             + SS   ++ +I   L S     ++ + R+ NQ A+G+AK A++   +C
Sbjct: 1313 SQLSSFHDLVEDISYHLSSFSNACISHVRRDANQAAHGLAKQALQLDNDC 1353

BLAST of Sed0027430 vs. NCBI nr
Match: XP_030496634.1 (uncharacterized protein LOC115712492 [Cannabis sativa])

HSP 1 Score: 208.8 bits (530), Expect = 1.0e-49
Identity = 121/418 (28.95%), Postives = 194/418 (46.41%), Query Frame = 0

Query: 6    WIPRAHSFKLATIPRREDMHRCVGDFISNEGNWDIQKLESMLWPVDIEIVLSVPICNSRT 65
            WIP    FK  +    + M   V  FI+++  W+I  L      +D++ ++++P+   +T
Sbjct: 751  WIPGFTDFKPVSFNGADTM--TVSHFITDQREWNISLLNQYFQSIDVDKIVTIPLSFFQT 810

Query: 66   PYGWMWHFSRDGVFSVKSAYKLCISSKEAEATSCSGVELDWWRNFWATPIPSKVRILIWR 125
                +WH +  G ++V S + L  +  E + T  S     WW+ FW   +PSKV+I  WR
Sbjct: 811  NDRLIWHHTTTGCYTVNSGFHLAENLAENQQTHASSSHSTWWKTFWNLELPSKVKIFAWR 870

Query: 126  VFHNFLPVAQNLFARHIIQSPNCISCNKV-ESALHTFFGCRRLKAFWKGLLPVALPPIDY 185
            V  N LPVA  L  R +I S  C  CN   ES  H  F C   +  W+           +
Sbjct: 871  VMQNALPVATGLVRRKVIDSATCSLCNNAWESVGHALFNCTTARKVWRDTKFTIDHTHTH 930

Query: 186  NGNIKDLLFFLGSKLPQQSFALLCVGMWAAWNDRNSLLRGEKIMPFEDRILWVLDYLREF 245
            N    D L  L S   +Q   L+   MWA W++RN ++ G       D   +   +L ++
Sbjct: 931  NMYNGDYLIHLSSLHSKQDLELIICTMWAIWHERNKVIHGGVSKSSHDIASFASTHLHQY 990

Query: 246  QAV--------NNINGPKTKLASRTE---------IADEEFCWCPPSGDDLTLNVDATCA 305
            Q          N+ N   +  AS +E          ++ +  W PP    L +NVDA   
Sbjct: 991  QRARTKNQQQFNHCNAHTSSSASASENISASTSQQRSNSDTSWSPPGITGLKINVDAAVN 1050

Query: 306  EDRFRVGFGAVVRDHAGKCLVASAKCVSFILESSAAEALALLHGMRLVVELDLKVTKIEI 365
            +++  +G GA++RDH G  + A +K V     S   EA AL H +   ++L L +T +E 
Sbjct: 1051 QEKKILGVGAIIRDHHGSVIAAISKPVQGCFRSDEMEAKALFHCLNWAMQLQLHITHVET 1110

Query: 366  DAKIIVEAVLNDRWRKSSLGTIIGEIRELLFSQCFKDLAFIPRNRNQVANGVAKWAVK 406
            DA  +  A+ +     SS   +I ++  LL       ++ + RN NQ A+G+AK+A++
Sbjct: 1111 DALRVSSALNSPFPNLSSFNDLIMDVSCLLSFFSGVTISHVKRNANQAAHGLAKYALE 1166

BLAST of Sed0027430 vs. NCBI nr
Match: XP_030509188.1 (uncharacterized protein LOC115723863 [Cannabis sativa])

HSP 1 Score: 200.3 bits (508), Expect = 3.5e-47
Identity = 119/399 (29.82%), Postives = 192/399 (48.12%), Query Frame = 0

Query: 23   DMHRCVGDFISNEGNWDIQKLESMLWPVDIEIVLSVPICNSRTPYGWMWHFSRDGVFSVK 82
            D +  V D I+ +  WD+  L +     D++ +LS+P+         +W  S  G+++VK
Sbjct: 927  DPNLLVADLITEQRQWDLISLRANFSQPDVDRILSIPLSLFPHDDAMIWSHSFTGIYNVK 986

Query: 83   SAYKLCISSKEAEATSCSGVELDWWRNFWATPIPSKVRILIWRVFHNFLPVAQNLFARHI 142
            S Y+L +S  E + T+ S    +WW  FW   +P KVRI +W+VFH+ LPVA  LF RHI
Sbjct: 987  SGYQLAVSYAEQDDTASSHSMENWWSTFWKMKLPPKVRIFVWKVFHSTLPVAAELFRRHI 1046

Query: 143  IQSPNCISCNKVESAL-HTFFGCRRLKAFWKGLLPVALPPIDYN----GNIKDLLFFLGS 202
              SP+C  CN  E ++ H  F C R KA W+    ++   ID++        D+L  L +
Sbjct: 1047 ATSPHCSICNSAEESINHALFDCPRAKAVWE----LSSLHIDFHTLRQSASADILLHLST 1106

Query: 203  KLPQQSFALLCVGMWAAWNDRNSLLRGEKIMPFEDRILWVLDYLREFQAVNNINGPKT-- 262
             L    F L  V  W  W++RN++  G  +   +    +   YL EFQ         T  
Sbjct: 1107 ALSTSEFELFLVLCWCNWHERNAIYHGNTVRSSQAVASYAPSYLAEFQNARAKRSQPTPI 1166

Query: 263  KLASRTEIADEEFC----WCPPSGDDLTLNVDATCAEDRFRVGFGAVVRDHAGKCLVASA 322
             +A+       EF     W  P    L LN DA   + R +VG GA +R+  G  + A +
Sbjct: 1167 SIAATDPRPSSEFTHAPKWTAPPQGRLKLNTDAAIDKARNKVGIGATLRNSDGFIVAAIS 1226

Query: 323  KCVSFILESSAAEALALLHGMRLVVELDLKVTKIEIDAKIIVEAVLNDRWRKSSLGTIIG 382
            K +    ++   EA+ L   +  ++  +L V  IE D+ ++V+ +L+ +   S+   I+ 
Sbjct: 1227 KPLLGNYKAEEMEAIGLALSLNWLISNNLSVDFIETDSLLVVQGLLSSQSYLSAFHAILN 1286

Query: 383  EIRELLFSQCFKDLAFIPRNRNQVANGVAKWAVKNGCEC 411
             I  L+       +  + R+ N  A+ +AK+A+    EC
Sbjct: 1287 NINFLVSFFPRAQINHVFRSANTYAHTLAKYALTVDTEC 1321

BLAST of Sed0027430 vs. ExPASy Swiss-Prot
Match: P0C2F6 (Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana OX=3702 GN=At1g65750 PE=3 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 2.7e-13
Identity = 76/344 (22.09%), Postives = 136/344 (39.53%), Query Frame = 0

Query: 71  WHFSRDGVFSVKSAYKLCISSKEAEATSCSGVELDWWRNFWATPIPSKVRILIWRVFHNF 130
           W FS+DG FSV+SAY++    +       S     ++   W   +P +V+  +W V +  
Sbjct: 257 WKFSQDGQFSVRSAYEMLTVDEVPRPNMAS-----FFNCLWKVRVPERVKTFLWLVGNQA 316

Query: 131 LPVAQNLFARHIIQSPNCISC-NKVESALHTFFGCRRLKAFWKGLLPVALPPIDYNGNIK 190
           +   +    RH+  S  C  C   VES LH    C      W  ++P       ++ ++ 
Sbjct: 317 VMTEEERHRRHLSASNVCQVCKGGVESMLHVLRDCPAQLGIWVRVVPQRRQQGFFSKSLF 376

Query: 191 DLLF-FLGSKLPQQSF---ALLCVGMWAAWNDRNSLLRGEKIMPFEDRILWVLDYLREFQ 250
           + L+  LG +   +      +  V +W  W  R   + GE      DR+ +V ++  E  
Sbjct: 377 EWLYDNLGDRSGCEDIPWSTIFAVIIWWGWKWRCGNIFGEN-TKCRDRVKFVKEWAVEVY 436

Query: 251 AVNNINGPKTKLASRTEIADEEFC-WCPPSGDDLTLNVDATCAEDRFRVGFGAVVRDHAG 310
             ++ N     L   T+   E    W  P    + +N D     +      G V+RD  G
Sbjct: 437 RAHSGN----VLVGITQPRVERMIGWVSPCVGWVKVNTDGASRGNPGLASAGGVLRDCTG 496

Query: 311 KCLVASAKCVSFIL-----ESSAAEALALLHGMRLVVELDLKVTKIEIDAKIIVEAVLND 370
                 A C  F L      +  AE   + +G+    E  +   ++E+D+++IV  +   
Sbjct: 497 ------AWCGGFSLNIGRCSAPQAELWGVYYGLYFAWEKKVPRVELEVDSEVIVGFLKTG 556

Query: 371 RWRKSSLGTIIGEIRELLFSQCFKDLAFIPRNRNQVANGVAKWA 404
                 L  ++      L       +  + R  N++A+G+A +A
Sbjct: 557 ISDSHPLSFLVRLCHGFLQKDWLVRIVHVYREANRLADGLANYA 584

BLAST of Sed0027430 vs. ExPASy TrEMBL
Match: A0A6J1DX30 (uncharacterized protein LOC111024874 OS=Momordica charantia OX=3673 GN=LOC111024874 PE=4 SV=1)

HSP 1 Score: 214.5 bits (545), Expect = 8.8e-52
Identity = 117/406 (28.82%), Postives = 195/406 (48.03%), Query Frame = 0

Query: 2    FDFPWIPRAHSFKLATIPRREDMHRCVGDFISNEGNWDIQKLESMLWPVDIEIVLSVPIC 61
            F  PW+PR  +FK         +   V  FI+ +GNWD+  +       D +++LS+PI 
Sbjct: 1028 FSDPWLPRPTTFKPLRF-NNGALDTTVASFITADGNWDVTSISHSFCNEDRDLILSMPIS 1087

Query: 62   NSRTPYGWMWHFSRDGVFSVKSAYKLCISSKEAEATSCSGVELDWWRNFWATPIPSKVRI 121
            +      W+WH+ + G +SV+S YKL +  K    ++ +      W + W   +P+K++I
Sbjct: 1088 SYNLQDSWLWHYDKRGNYSVRSGYKLYMHLKCNATSASTNYRGTQWNSIWKLTVPTKIKI 1147

Query: 122  LIWRVFHNFLPVAQNLFARHIIQSPNCISC-NKVESALHTFFGCRRLKAFWKGLLP-VAL 181
             IWR  H  +P AQNL  R I + P C  C ++ ES +H FF C+R +  W+ L P +  
Sbjct: 1148 FIWRSAHEHIPTAQNLLLRGIGELPACTICGDRRESIIHAFFHCKRARQIWRTLFPFLTC 1207

Query: 182  PPIDYNGNIKDLLFFLGSKLPQQSFALLCVGMWAAWNDRNSLLRGEKIMPFEDRILWVLD 241
               + N +  +L   L  +L  +   L  +  W  WNDRNSL+ G+++ P E +  W+  
Sbjct: 1208 LSAEDNISFLELWSSLTEQLEPKDLNLAAITGWGIWNDRNSLIHGKQVSPVEFKCEWLTP 1267

Query: 242  YL-REFQAVNNINGPKTKLASRTEIADEEFCWCPPSGDDLTLNVDATCAEDRFRVGFGAV 301
            +L    QA  +   P+T+   R  +      W P S   L LN DA C        FG +
Sbjct: 1268 FLDSHSQAQMSNYSPRTQSNHRPVVQ----YWRPSSSVSLKLNTDAACR--GASTSFGCI 1327

Query: 302  VRDHAGKCLVASAKCVSFILESSAAEALALLHGMRLVVELDLKVTKIEIDAKIIVEAVLN 361
            +RD +   + A++  V F L    AE   +L G++     +    ++E D+ + ++ + N
Sbjct: 1328 IRDSSCSLVAATSIRVPFPLSPLLAEIRCILEGLKFAAASNFTHLEVESDSLLAIQLIRN 1387

Query: 362  DRWRKSSLGTIIGEIRELLFSQCFKDLAFIPRNRNQVANGVAKWAV 405
            +   +      + EI+ L     F   +   R  N+ A+G+AKW +
Sbjct: 1388 EIHTRGDEQNWVMEIQALTCCFAFISFSHSSRQCNRAAHGLAKWGI 1426

BLAST of Sed0027430 vs. ExPASy TrEMBL
Match: A0A803QH07 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 211.5 bits (537), Expect = 7.4e-51
Identity = 124/413 (30.02%), Postives = 191/413 (46.25%), Query Frame = 0

Query: 5    PWIPRAHSFKLATIPRREDMHRCVGDFISNEGNWDIQKLESMLWPVDIEIVLSVPICNSR 64
            PWIP   SF+  +      +   V   I++   W+   L     P+D+E +LS+P+    
Sbjct: 1410 PWIPSHDSFRPVSYCGPPQLP--VSALINDNREWNSTLLNDFFQPIDVEKILSIPLSYFA 1469

Query: 65   TPYGWMWHFSRDGVFSVKSAYKLCISSKEAEATSCSGVELDWWRNFWATPIPSKVRILIW 124
            T    +WH S  G ++VKS + L    ++   +S S    DWW+ FW   +P K+RI  W
Sbjct: 1470 TQDRLIWHHSTSGSYNVKSGFHLATHLEDQLQSSSSDANRDWWKFFWNLSLPPKIRIFAW 1529

Query: 125  RVFHNFLPVAQNLFARHIIQSPNCISCNKV-ESALHTFFGCRRLKAFWKG---LLPVALP 184
            +V  + LPVA  LF R +I S  C  CN   ES  H  FGC   K  WK    ++     
Sbjct: 1530 KVIQHILPVAAALFKRKVIDSAACSLCNSSWESIGHALFGCSHAKNIWKESKFIIDFNKA 1589

Query: 185  PIDYNGNIKDLLFFLGSKLPQQSFALLCVGMWAAWNDRNSLLRGEKIMPFEDRILWVLDY 244
               +NG   D L +L +   Q+ F L    +W  W DRN +  G K       I +   +
Sbjct: 1590 QSMFNG---DYLHYLSAVYTQEDFELFICLLWGIWTDRNRVFHGGKARISSSIITYTTGF 1649

Query: 245  LREFQAVNNINGPKTKLA---------SRTEIADEEFCWCPPSGDDLTLNVDATCAEDRF 304
             R++    +++   T  A         S  +   +   W PP+ +   LNVDA    D+ 
Sbjct: 1650 HRDYSRTKHLSSQSTAAAAELSSTHQNSTPQTMHQHTPWTPPNINGFKLNVDAASNSDQQ 1709

Query: 305  RVGFGAVVRDHAGKCLVASAKCVSFILESSAAEALALLHGMRLVVELDLKVTKIEIDAKI 364
            ++G GA++R H G  + A +K V     S   EA AL H +  V +  L +T IE DA  
Sbjct: 1710 KLGIGAIIRSHDGMVVAALSKVVQGSFRSDEMEAKALFHALNWVSQSQLSITHIETDALR 1769

Query: 365  IVEAVLNDRWRKSSLGTIIGEIRELLFSQCFKDLAFIPRNRNQVANGVAKWAV 405
            +  A+ + +   S    +I +IR LL       ++   R+ NQ A+G+A++A+
Sbjct: 1770 VSTALNSTKSDLSCFSDLIFDIRCLLSFFPSVLVSHAKRSANQAAHGLARFAL 1817

BLAST of Sed0027430 vs. ExPASy TrEMBL
Match: A0A803Q8I6 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 211.5 bits (537), Expect = 7.4e-51
Identity = 122/413 (29.54%), Postives = 201/413 (48.67%), Query Frame = 0

Query: 6   WIPRAHSFKLATIPRREDMHRCVGDFISNEGNWDIQKLESMLWPVDIEIVLSVPICNSRT 65
           WIP    FK  +    + +   V +FI+N+  W+I  L      +D++ ++++P+    +
Sbjct: 416 WIPGYTDFKPVSFNGADSL--TVSNFITNQREWNIPLLNQYFQSIDVDRIVTIPLSFFPS 475

Query: 66  PYGWMWHFSRDGVFSVKSAYKLCISSKEAEATSCSGVELDWWRNFWATPIPSKVRILIWR 125
               +WH +  G ++V S + L  +  E + T+ S     WWR FW+  +P KV+I  WR
Sbjct: 476 NDRLIWHHTITGCYTVNSGFHLAENLAENQETNGSNSRSTWWRTFWSLNLPCKVKIFAWR 535

Query: 126 VFHNFLPVAQNLFARHIIQSPNCISCNKV-ESALHTFFGCRRLKAFWKGLLPVALPPIDY 185
           V  N LPVA +L  R +I S  C  CN   ES  H  F C + +  W+           +
Sbjct: 536 VMQNALPVATSLVRRKVIDSVTCSLCNNAWESIGHALFNCTKARKVWRETKFTIDHTHTH 595

Query: 186 NGNIKDLLFFLGSKLPQQSFALLCVGMWAAWNDRNSLLRGEKIMPFEDRILWVLDYLREF 245
           N    D L  L S   +Q F L+   MWA W+DRN +++G    P +    +   +L ++
Sbjct: 596 NMYNGDYLIHLSSLHSKQDFELIVCTMWAIWHDRNKVIQGGLSKPSQVIAYFASAHLEQY 655

Query: 246 ---------QAVN---NINGPKTKLASRTEIADEEFCWCPPSGDDLTLNVDATCAEDRFR 305
                    Q +N   + +   T +  + +I+D    W PPS   L +NVD    ++R  
Sbjct: 656 YRAKTKNQQQYINCNVHTSNDSTPVHFQRQISDVP--WSPPSISGLKINVDVVVNQERKV 715

Query: 306 VGFGAVVRDHAGKCLVASAKCVSFILESSAAEALALLHGMRLVVELDLKVTKIEIDAKII 365
           +G GA+VRDH G  + A +K V     S   EA AL H +   ++L L++T ++ DA  +
Sbjct: 716 LGVGAIVRDHQGSVVAALSKPVQGCFRSDEMEAKALFHSLNWALQLQLQLTNVDTDALRV 775

Query: 366 VEAVLNDRWRKSSLGTIIGEIRELLFSQCFKDLAFIPRNRNQVANGVAKWAVK 406
             A+ +     SS   +I ++  LL       ++ + RN NQ A+G+AK+A++
Sbjct: 776 SSAINSLSKNLSSFNDLIMDVSCLLSFFSGVTISHVKRNANQAAHGLAKYALE 824

BLAST of Sed0027430 vs. ExPASy TrEMBL
Match: A0A803PIB6 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 210.7 bits (535), Expect = 1.3e-50
Identity = 125/410 (30.49%), Postives = 200/410 (48.78%), Query Frame = 0

Query: 6    WIPRAHSFKLATIPRREDMHRCVGDFISNEGNWDIQKLESMLWPVDIEIVLSVPICNSRT 65
            WIP    FK   +         V D+I++   WD++ L +   P DI+ +L++P+  + T
Sbjct: 1413 WIPGNEYFK--PLRFTGSCSNLVADYITDTREWDLELLHNDFSPADIDRILTIPLSYNST 1472

Query: 66   PYGWMWHFSRDGVFSVKSAYKLCISSKEAEATSCSGVELDWWRNFWATPIPSKVRILIWR 125
               W WH+   G ++VKS Y L  S +  + +S S  +  WW+ FW   +PSKVRI  WR
Sbjct: 1473 RDRWRWHYDSSGDYTVKSGYNLACSLENKDHSSSSTSQEAWWQLFWGLNLPSKVRIFGWR 1532

Query: 126  VFHNFLPVAQNLFARHIIQSPNCISCNKV-ESALHTFFGCRRLKAFWKGL---LPVALPP 185
            V ++ LPVAQNLF R +I S  C  C++  ES  H  F C   K+ W+     L      
Sbjct: 1533 VINSALPVAQNLFHRKVITSATCSLCSRAWESIGHALFSCCHAKSVWQHTSFQLDFTKAS 1592

Query: 186  IDYNGNIKDLLFFLGSKLPQQSFALLCVGMWAAWNDRNSLLRGEKIMPFEDRILWVLDYL 245
               +G   D L FL + L +     L   MW  W+DRN+ +  +++            YL
Sbjct: 1593 FMKDG---DYLLFLSTILTKSELEKLFCTMWFIWSDRNNYIHCKQLKHPMAISSQAEAYL 1652

Query: 246  REFQAVNNINGPKTKLASRTEIADEEFC-WCPPSGDDLTLNVDATCAEDRFRVGFGAVVR 305
              F +V +   P     +    AD     W PP+  +L +NVDA     R ++G G ++R
Sbjct: 1653 ANFHSVKSATAPAVSCVA----ADARTVKWVPPTESNLKMNVDAALDSSRNKIGIGVIIR 1712

Query: 306  DHAGKCLVASAKCVSFILESSAAEALALLHGMRLVVELDLKVTKIEIDAKIIVEAVLNDR 365
            D  G+ + A +K V    +S   EA A+  G++   +L L+   +E D  ++V A+   +
Sbjct: 1713 DSTGRVIAAMSKPVVGNFKSQEMEAKAMFWGLQWAKQLQLQPHCVETDCLMLVHALQGKQ 1772

Query: 366  WRKSSLGTIIGEIRELLFSQCFKDLAFIPRNRNQVANGVAKWAVKNGCEC 411
             + SS   ++ +I   L S     ++ + R+ NQ A+G+AK A++   +C
Sbjct: 1773 SQLSSFHDLVEDISYHLSSFSNACISHVRRDANQAAHGLAKQALQLDNDC 1813

BLAST of Sed0027430 vs. ExPASy TrEMBL
Match: A0A803QHU6 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 209.5 bits (532), Expect = 2.8e-50
Identity = 127/412 (30.83%), Postives = 201/412 (48.79%), Query Frame = 0

Query: 5    PWIPRAHSFKLATIPRREDMHRCVGDFISNEGNWDIQKLESMLWPVDIEIVLSVPICNSR 64
            PWI   + FK  +      +   V  FI+ E  W++  L +   P+D + +L++P+    
Sbjct: 818  PWIQGFNEFKPVSYLGSTSLP--VSSFITEERIWNVPMLNTYFHPIDSDRILTIPLSFFP 877

Query: 65   TPYGWMWHFSRDGVFSVKSAYKLCISSKEAEATSCSGVELDWWRNFWATPIPSKVRILIW 124
                 +WHF+ +G+++V+S + L  S +E   +S S  + DWW+ FW   +P K+RI +W
Sbjct: 878  DMDRLIWHFTSNGLYTVQSGFHLASSLEEQHCSSTSNNQRDWWKYFWNLNLPPKIRIFVW 937

Query: 125  RVFHNFLPVAQNLFARHIIQSPNCISC-NKVESALHTFFGCRRLKAFWK---GLLPVALP 184
            +V HN LP A  LF + ++ S  C  C +  ES  H  FGC+  KA WK     L ++  
Sbjct: 938  KVLHNILPTAAALFKKKVLTSAECSLCASNWESIGHALFGCKHAKAIWKISTFQLDLSKA 997

Query: 185  PIDYNGNIKDLLFFLGSKLPQQSFALLCVGMWAAWNDRNSLLRGEKIMPFEDRILWVLDY 244
               +NG   D L  L + L QQ F LL   +W  W DRN ++ G         I + + +
Sbjct: 998  QNMFNG---DYLQNLSTILSQQDFELLLCILWGIWTDRNKVVHGGSSRLHAAIINYAIRF 1057

Query: 245  LREFQAVNNINGP----KTKLASRTEIADEEFC--WCPPSGDDLTLNVDATCAEDRFRVG 304
              +F    N+  P      K  + T  A  +    W PP  +   LNVDA    D+ ++G
Sbjct: 1058 HEDFIRAKNVVPPAAVCSNKQPATTPSATIQHVAKWKPPLYNGFKLNVDAATNVDQKKLG 1117

Query: 305  FGAVVRDHAGKCLVASAKCVSFILESSAAEALALLHGMRLVVELDLKVTKIEIDAKIIVE 364
             GA++RDH G  + A +K       S   EA AL H +   ++  L +T IE DA  +  
Sbjct: 1118 VGAIIRDHNGVVVAAYSKVAQGNFRSDEMEAKALFHALNWALQHQLAITHIETDALRVST 1177

Query: 365  AVLNDRWRKSSLGTIIGEIRELL--FSQCFKDLAFIPRNRNQVANGVAKWAV 405
            A+ +     S    II ++R LL  F Q    +  + R+ NQ A+G+A++++
Sbjct: 1178 ALNSTSKDLSCFSDIIMDVRCLLSFFPQVL--VTHVKRSANQAAHGLARFSL 1222

BLAST of Sed0027430 vs. TAIR 10
Match: AT3G26855.1 (RNA-directed DNA polymerase (reverse transcriptase)-related family protein )

HSP 1 Score: 54.3 bits (129), Expect = 2.9e-07
Identity = 21/60 (35.00%), Postives = 32/60 (53.33%), Query Frame = 0

Query: 105 DWWRNFWATPIPSKVRILIWRVFHNFLPVAQNLFARHIIQSPNCISCNKVESALHTFFGC 164
           +W  + W+  I  K+++LIW+  +N LPV   L +R+I   P C  C   E+  H  F C
Sbjct: 4   NWIGDIWSLKISPKIKLLIWKALNNALPVGAQLLSRNISIEPFCTRCRDFETITHILFNC 63

BLAST of Sed0027430 vs. TAIR 10
Match: AT2G22440.1 (BEST Arabidopsis thaliana protein match is: Ribonuclease H-like superfamily protein (TAIR:AT4G29090.1); Has 208 Blast hits to 191 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 208; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 51.6 bits (122), Expect = 1.9e-06
Identity = 24/82 (29.27%), Postives = 41/82 (50.00%), Query Frame = 0

Query: 5  PWIPRAHSFKLATIPRREDMHRCVGDFISNEGN-WDIQKLESMLWPVDIEIVLSVPICNS 64
          PWIP   +    +I    D    V D I    N W + +L++++ PVDI ++L +    +
Sbjct: 9  PWIPTILARPAKSILNIRDSLLYVNDLIDQNTNLWKLDRLQALIDPVDIPLILGIRPSRT 68

Query: 65 RTPYGWMWHFSRDGVFSVKSAY 86
              G+ W  ++ G ++VKS Y
Sbjct: 69 YLSDGFSWSHTKSGNYTVKSGY 90

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022158377.11.8e-5128.82uncharacterized protein LOC111024874 [Momordica charantia][more]
XP_030502555.11.2e-5030.56uncharacterized protein LOC115717715 [Cannabis sativa][more]
XP_030497600.12.6e-5030.49uncharacterized protein LOC115713257 [Cannabis sativa][more]
XP_030496634.11.0e-4928.95uncharacterized protein LOC115712492 [Cannabis sativa][more]
XP_030509188.13.5e-4729.82uncharacterized protein LOC115723863 [Cannabis sativa][more]
Match NameE-valueIdentityDescription
P0C2F62.7e-1322.09Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana OX=3702 GN=At1... [more]
Match NameE-valueIdentityDescription
A0A6J1DX308.8e-5228.82uncharacterized protein LOC111024874 OS=Momordica charantia OX=3673 GN=LOC111024... [more]
A0A803QH077.4e-5130.02Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1[more]
A0A803Q8I67.4e-5129.54Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1[more]
A0A803PIB61.3e-5030.49Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1[more]
A0A803QHU62.8e-5030.83Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT3G26855.12.9e-0735.00RNA-directed DNA polymerase (reverse transcriptase)-related family protein [more]
AT2G22440.11.9e-0629.27BEST Arabidopsis thaliana protein match is: Ribonuclease H-like superfamily prot... [more]
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR026960Reverse transcriptase zinc-binding domainPFAMPF13966zf-RVTcoord: 79..171
e-value: 2.0E-18
score: 66.9
IPR002156Ribonuclease H domainPFAMPF13456RVT_3coord: 281..403
e-value: 1.7E-18
score: 66.6
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 277..410
e-value: 2.2E-11
score: 45.8
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 414..448
NoneNo IPR availablePANTHERPTHR46736:SF6SUBFAMILY NOT NAMEDcoord: 42..373
NoneNo IPR availablePANTHERPTHR46736FAMILY NOT NAMEDcoord: 42..373
IPR044730Ribonuclease H-like domain, plant typeCDDcd06222RNase_H_likecoord: 280..401
e-value: 1.06726E-14
score: 68.4948
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 278..400

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0027430.1Sed0027430.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0004523 RNA-DNA hybrid ribonuclease activity