Sed0026729 (gene) Chayote v1
Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.AAATAATAAAGCCCTAGAAATTAGCATAAGTGGAACGCAAAATTCTCAGTACAACTGAAAACCAAATCCAGACCAAGGCTGCAGCTGGTGGTTGAAGCCCTAACTTTGTTCTGTTTTTGTGTTTTCAATTTCTACAATTTAAACTCTCTACAAATTGGATCTCAGCGCTTCCTTACCGCTTTGGATTCGTCAATTCGTGTTCGCAGTTTTCTCAAATCTTTACCAGACCGGAAACTGCGTTCTTGAATCGCTTGTTTTCAGTTCCGAGGAACTTTCTGAATCGCGGTTACAGTCTTTGAGGAAATTCTCGAAGGATTTTGCGGGATTTATTGGGGTTTTAGTTGGGAATCTGGGCAGCCAATGCTGTTAGCTTCGTTTCGAGTTCAAAGAATTTTTGGGTGATTAGGGTTCGTCGATGTCTTGGGCTAGCGCGGAAGATATTTACCTTTCCACTTCTCTTGCCAATTACCTTGACAGTATGTTGCTTCAGTTTTGTTTTTTGTTTATTTGAAGTTTAATGCAACTGGGTTCATGGGGTTTGCCTATTTTGTGTTGTGTTTGTCTCTTCATCATCATGGGTTTTGGTTTCAAATTGTTATTTTACTGCAACTCTTTGATTGGGAATGGTTTTTTACTTGATTGTTGTTTTCCATAGAGTAATGATGTAACCTTGTGGAGATGTTGCTGGTTGGCATAATAGTTGTCTGTTGACTGATTGTTAATTGGATATGGAATTCATTATTGAATTGTTAAGTTTTTTTAGAGCACTAGCTCTTTGTGTATCTAGATTTGTGGCTTGCCCAACGTGTCACCAAGTTTAGTGAAATGCATGAATGGGGATCAACTTAACTTTTTTGGTGAACATTGGTAATGTAAAAGACGATATTTGACTCGAGTGTACTTTTAAGAGATTTTAGTAAAAAAAACGTTTTTATTTGGTGAATGTCTTTTAGGTCCCTCTTCTTTTAAAGAGATAATGGATGAGTTCATAAGAAGAGTACACCTTGGTGTTATTTCATATATGTATCTTGACAATTCTCATGGGATAGACTGTCTGACCCTGGAACATTTGGTTGCCAAGGTAACCTGTAGGAAATTAATTTACAGGTAGGTGACCGTTGTAGATTGAACTCACAACATTGTTGTTCTCCAAGGCCCTCTTGAACCTAGTCCAATATATGATCAACCCATTATGAAATTTTACTTATAAAAATTAGTTTTTCACTTAGATATTCTAGATATGACCAGGTGATAGTGATACCGCTTTGAATGAGCTTGCCGTGGTCAACTATAGTTGACTTGTCTTTTCACCTTTCCTATCACCATATGCAATTGTCTAGCTCTACTTGAAAATATTTATGTCAACTTTGATCTGACATGATCAAATAGGAGAATTTTATGGGATAGTAGATAATTTACCCTTTCTCTTGTGGATAATATTTTAGTATTAGAACTAGTGCAACAAACAGCACTGATGTTCCTGTGTTAGTATTGCTGAAAAGCTTCTGTACAGCTATATCTTCCTTCTAAATGATTGTTTGGTTGTAGACTGCTAGGAAAGAATTGAAACACATTGTTATAGTTCTTCTGACATTTCATTAATTGCCTTTGCATGATTGAAGCAAGTTAGAAAACCATATTATTTGTTGATTTCAGCATGTATGCATTCTTACGATTGTTTTGTAAAGGATGGGGAAAGCTAGTGTTTCTACTAATGGCATGAAATTGTTTAGTTAAATCATGCATCTGTATTTTGTTTTCATACATTAGTAGAGTTGTTCTAACGAAAATTTCAATGTATAGAGAAGGTCCTTGTACTACTTCGAGATGGTCGAAAGCTATTAGGGATACTCCGTTCATTTGATCAATTTGGTATGTTTCTTACTGAAACTTTACATGGTTTGGTATTTTTTTTACCGCATTAACATTCACCTAGACTTGAAGAACCAATTGTTTCTATTTTCAGCAAATGCTGTTCTTGAAGGATCCTGTGAAAGGGTTATTGTTGGTGACCTTTACAGCGATATTCCTTTAGGTCTCTATGTAATTCGAGGGGAAAACGTAGTTTTACTTGGCGAGCTGGTAGGAGGAACCTCGTATTTATTTGCCTTTTACCCATCCTTCTTAGACCTCCTAAATTTTTTCTTTTGGGCTTTATAGGACTTGGAGAAGGATGAGCTCCCTCCACACATGACTCATGTCTCTGCTGTGGAGATTAAAAAGGTAAGTGATGTTGACTTCTTATATCTTTGTCTGAACTCTTCCATTAGATTTATTAAACATTACACATCATTGATTTTTGCTCATGTCTGAAATTAGTCTTCTGTGTGCTGGATGATATTTTTGCTAAACTAGCATACACCCTTTTGCTTCTGTAGTTGTATATAAATCTGTTAGGTATTTACAAACTAGAATCTATTATTATTCCAGGCTCAAAAAGCAGAGAGAGAGGCTACAGATCTTAAAGGTACAATCAGGAAAAGACTGGAGTTCCTTGATCTGGATTAATTGCTGTTTCATAATCTTGAATTTGTTAGCTTTCTTGTTCGCAAGTTCTACAGCTTCTCTCGTTCATTGCCCTGTAAGTTAATCTTATCACATGTTTTTTTTTTTAATGGACAACTGAGAGCCTATTTTTGTGGCCACTAGAACTCAAACATTATGTTGCTGACCTTCAATTTATCATGTAATATTTTATTCCATAAATAAAGACCCATTCCTCTTCCCCCCAAAGCCAAAATTTACTTTTCTTTTGA AAATAATAAAGCCCTAGAAATTAGCATAAGTGGAACGCAAAATTCTCAGTACAACTGAAAACCAAATCCAGACCAAGGCTGCAGCTGGTGGTTGAAGCCCTAACTTTGTTCTGTTTTTGTGTTTTCAATTTCTACAATTTAAACTCTCTACAAATTGGATCTCAGCGCTTCCTTACCGCTTTGGATTCGTCAATTCGTGTTCGCAGTTTTCTCAAATCTTTACCAGACCGGAAACTGCGTTCTTGAATCGCTTGTTTTCAGTTCCGAGGAACTTTCTGAATCGCGGTTACAGTCTTTGAGGAAATTCTCGAAGGATTTTGCGGGATTTATTGGGGTTTTAGTTGGGAATCTGGGCAGCCAATGCTGTTAGCTTCGTTTCGAGTTCAAAGAATTTTTGGGTGATTAGGGTTCGTCGATGTCTTGGGCTAGCGCGGAAGATATTTACCTTTCCACTTCTCTTGCCAATTACCTTGACAAGAAGGTCCTTGTACTACTTCGAGATGGTCGAAAGCTATTAGGGATACTCCGTTCATTTGATCAATTTGCAAATGCTGTTCTTGAAGGATCCTGTGAAAGGGTTATTGTTGGTGACCTTTACAGCGATATTCCTTTAGGTCTCTATGTAATTCGAGGGGAAAACGTAGTTTTACTTGGCGAGCTGGACTTGGAGAAGGATGAGCTCCCTCCACACATGACTCATGTCTCTGCTGTGGAGATTAAAAAGGCTCAAAAAGCAGAGAGAGAGGCTACAGATCTTAAAGGTACAATCAGGAAAAGACTGGAGTTCCTTGATCTGGATTAATTGCTGTTTCATAATCTTGAATTTGTTAGCTTTCTTGTTCGCAAGTTCTACAGCTTCTCTCGTTCATTGCCCTGTAAGTTAATCTTATCACATGTTTTTTTTTTTAATGGACAACTGAGAGCCTATTTTTGTGGCCACTAGAACTCAAACATTATGTTGCTGACCTTCAATTTATCATGTAATATTTTATTCCATAAATAAAGACCCATTCCTCTTCCCCCCAAAGCCAAAATTTACTTTTCTTTTGA ATGTCTTGGGCTAGCGCGGAAGATATTTACCTTTCCACTTCTCTTGCCAATTACCTTGACAAGAAGGTCCTTGTACTACTTCGAGATGGTCGAAAGCTATTAGGGATACTCCGTTCATTTGATCAATTTGCAAATGCTGTTCTTGAAGGATCCTGTGAAAGGGTTATTGTTGGTGACCTTTACAGCGATATTCCTTTAGGTCTCTATGTAATTCGAGGGGAAAACGTAGTTTTACTTGGCGAGCTGGACTTGGAGAAGGATGAGCTCCCTCCACACATGACTCATGTCTCTGCTGTGGAGATTAAAAAGGCTCAAAAAGCAGAGAGAGAGGCTACAGATCTTAAAGGTACAATCAGGAAAAGACTGGAGTTCCTTGATCTGGATTAA MSWASAEDIYLSTSLANYLDKKVLVLLRDGRKLLGILRSFDQFANAVLEGSCERVIVGDLYSDIPLGLYVIRGENVVLLGELDLEKDELPPHMTHVSAVEIKKAQKAEREATDLKGTIRKRLEFLDLD Homology
BLAST of Sed0026729 vs. NCBI nr
Match: XP_004141715.1 (sm-like protein LSM1B [Cucumis sativus] >XP_008462280.1 PREDICTED: sm-like protein LSM1B [Cucumis melo] >XP_022954404.1 sm-like protein LSM1B [Cucurbita moschata] >XP_022954405.1 sm-like protein LSM1B [Cucurbita moschata] >XP_022992441.1 sm-like protein LSM1B [Cucurbita maxima] >XP_022992442.1 sm-like protein LSM1B [Cucurbita maxima] >XP_023547534.1 sm-like protein LSM1B [Cucurbita pepo subsp. pepo] >XP_023547535.1 sm-like protein LSM1B [Cucurbita pepo subsp. pepo] >XP_038897086.1 sm-like protein LSM1B [Benincasa hispida] >KAA0059385.1 sm-like protein LSM1B [Cucumis melo var. makuwa] >KAG6575433.1 Sm-like protein LSM1B, partial [Cucurbita argyrosperma subsp. sororia] >KAG7013976.1 Sm-like protein LSM1B [Cucurbita argyrosperma subsp. argyrosperma] >KGN45472.1 hypothetical protein Csa_015989 [Cucumis sativus] >TYK03941.1 sm-like protein LSM1B [Cucumis melo var. makuwa]) HSP 1 Score: 248.4 bits (633), Expect = 3.2e-62 Identity = 126/128 (98.44%), Postives = 128/128 (100.00%), Query Frame = 0
BLAST of Sed0026729 vs. NCBI nr
Match: XP_022154301.1 (sm-like protein LSM1B [Momordica charantia]) HSP 1 Score: 246.9 bits (629), Expect = 9.4e-62 Identity = 125/128 (97.66%), Postives = 128/128 (100.00%), Query Frame = 0
BLAST of Sed0026729 vs. NCBI nr
Match: XP_022964148.1 (sm-like protein LSM1B [Cucurbita moschata] >XP_022964149.1 sm-like protein LSM1B [Cucurbita moschata] >XP_022999982.1 sm-like protein LSM1B [Cucurbita maxima] >KAG6593561.1 Sm-like protein LSM1B, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 245.7 bits (626), Expect = 2.1e-61 Identity = 124/128 (96.88%), Postives = 128/128 (100.00%), Query Frame = 0
BLAST of Sed0026729 vs. NCBI nr
Match: XP_023515193.1 (sm-like protein LSM1B isoform X1 [Cucurbita pepo subsp. pepo] >XP_023515194.1 sm-like protein LSM1B isoform X2 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 244.6 bits (623), Expect = 4.7e-61 Identity = 123/128 (96.09%), Postives = 128/128 (100.00%), Query Frame = 0
BLAST of Sed0026729 vs. NCBI nr
Match: XP_021611176.1 (sm-like protein LSM1B [Manihot esculenta] >OAY53239.1 hypothetical protein MANES_04G147400v8 [Manihot esculenta]) HSP 1 Score: 230.3 bits (586), Expect = 9.1e-57 Identity = 114/128 (89.06%), Postives = 123/128 (96.09%), Query Frame = 0
BLAST of Sed0026729 vs. ExPASy Swiss-Prot
Match: Q8LFL8 (Sm-like protein LSM1B OS=Arabidopsis thaliana OX=3702 GN=LSM1B PE=1 SV=1) HSP 1 Score: 207.6 bits (527), Expect = 8.3e-53 Identity = 100/128 (78.12%), Postives = 116/128 (90.62%), Query Frame = 0
BLAST of Sed0026729 vs. ExPASy Swiss-Prot
Match: Q945P8 (Sm-like protein LSM1A OS=Arabidopsis thaliana OX=3702 GN=LSM1A PE=1 SV=1) HSP 1 Score: 198.0 bits (502), Expect = 6.6e-50 Identity = 98/128 (76.56%), Postives = 113/128 (88.28%), Query Frame = 0
BLAST of Sed0026729 vs. ExPASy Swiss-Prot
Match: P87173 (U6 snRNA-associated Sm-like protein LSm1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=lsm1 PE=1 SV=1) HSP 1 Score: 109.4 bits (272), Expect = 3.1e-23 Identity = 57/115 (49.57%), Postives = 83/115 (72.17%), Query Frame = 0
BLAST of Sed0026729 vs. ExPASy Swiss-Prot
Match: Q5E9Z8 (U6 snRNA-associated Sm-like protein LSm1 OS=Bos taurus OX=9913 GN=LSM1 PE=2 SV=1) HSP 1 Score: 106.3 bits (264), Expect = 2.6e-22 Identity = 56/99 (56.57%), Postives = 71/99 (71.72%), Query Frame = 0
BLAST of Sed0026729 vs. ExPASy Swiss-Prot
Match: Q54W83 (Probable U6 snRNA-associated Sm-like protein LSm1 OS=Dictyostelium discoideum OX=44689 GN=lsm1 PE=3 SV=1) HSP 1 Score: 106.3 bits (264), Expect = 2.6e-22 Identity = 52/112 (46.43%), Postives = 80/112 (71.43%), Query Frame = 0
BLAST of Sed0026729 vs. ExPASy TrEMBL
Match: A0A6J1JPU7 (U6 snRNA-associated Sm-like protein LSm1 OS=Cucurbita maxima OX=3661 GN=LOC111488744 PE=3 SV=1) HSP 1 Score: 248.4 bits (633), Expect = 1.6e-62 Identity = 126/128 (98.44%), Postives = 128/128 (100.00%), Query Frame = 0
BLAST of Sed0026729 vs. ExPASy TrEMBL
Match: A0A6J1GSW8 (U6 snRNA-associated Sm-like protein LSm1 OS=Cucurbita moschata OX=3662 GN=LOC111456650 PE=3 SV=1) HSP 1 Score: 248.4 bits (633), Expect = 1.6e-62 Identity = 126/128 (98.44%), Postives = 128/128 (100.00%), Query Frame = 0
BLAST of Sed0026729 vs. ExPASy TrEMBL
Match: A0A5A7V0M1 (U6 snRNA-associated Sm-like protein LSm1 OS=Cucumis melo var. makuwa OX=1194695 GN=LSM1 PE=3 SV=1) HSP 1 Score: 248.4 bits (633), Expect = 1.6e-62 Identity = 126/128 (98.44%), Postives = 128/128 (100.00%), Query Frame = 0
BLAST of Sed0026729 vs. ExPASy TrEMBL
Match: A0A0A0KAS4 (U6 snRNA-associated Sm-like protein LSm1 OS=Cucumis sativus OX=3659 GN=LSM1 PE=3 SV=1) HSP 1 Score: 248.4 bits (633), Expect = 1.6e-62 Identity = 126/128 (98.44%), Postives = 128/128 (100.00%), Query Frame = 0
BLAST of Sed0026729 vs. ExPASy TrEMBL
Match: A0A1S3CGJ0 (U6 snRNA-associated Sm-like protein LSm1 OS=Cucumis melo OX=3656 GN=LOC103500677 PE=3 SV=1) HSP 1 Score: 248.4 bits (633), Expect = 1.6e-62 Identity = 126/128 (98.44%), Postives = 128/128 (100.00%), Query Frame = 0
BLAST of Sed0026729 vs. TAIR 10
Match: AT3G14080.1 (Small nuclear ribonucleoprotein family protein ) HSP 1 Score: 207.6 bits (527), Expect = 5.9e-54 Identity = 100/128 (78.12%), Postives = 116/128 (90.62%), Query Frame = 0
BLAST of Sed0026729 vs. TAIR 10
Match: AT3G14080.2 (Small nuclear ribonucleoprotein family protein ) HSP 1 Score: 207.6 bits (527), Expect = 5.9e-54 Identity = 100/128 (78.12%), Postives = 116/128 (90.62%), Query Frame = 0
BLAST of Sed0026729 vs. TAIR 10
Match: AT1G19120.1 (Small nuclear ribonucleoprotein family protein ) HSP 1 Score: 198.0 bits (502), Expect = 4.7e-51 Identity = 98/128 (76.56%), Postives = 113/128 (88.28%), Query Frame = 0
BLAST of Sed0026729 vs. TAIR 10
Match: AT1G65700.1 (Small nuclear ribonucleoprotein family protein ) HSP 1 Score: 64.7 bits (156), Expect = 6.2e-11 Identity = 32/77 (41.56%), Postives = 49/77 (63.64%), Query Frame = 0
BLAST of Sed0026729 vs. TAIR 10
Match: AT1G65700.2 (Small nuclear ribonucleoprotein family protein ) HSP 1 Score: 64.7 bits (156), Expect = 6.2e-11 Identity = 32/77 (41.56%), Postives = 49/77 (63.64%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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