Sed0026729.1 (mRNA) Chayote v1

Overview


Name	Sed0026729.1
Type	mRNA
Organism	Sechium edule (Chayote v1)
Description	U6 snRNA-associated Sm-like protein LSm1
Location	LG04: 32010516 .. 32013271 (+)
Sequence length	1050
RNA-Seq Expression	Sed0026729.1
Synteny	Sed0026729.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAATAATAAAGCCCTAGAAATTAGCATAAGTGGAACGCAAAATTCTCAGTACAACTGAAAACCAAATCCAGACCAAGGCTGCAGCTGGTGGTTGAAGCCCTAACTTTGTTCTGTTTTTGTGTTTTCAATTTCTACAATTTAAACTCTCTACAAATTGGATCTCAGCGCTTCCTTACCGCTTTGGATTCGTCAATTCGTGTTCGCAGTTTTCTCAAATCTTTACCAGACCGGAAACTGCGTTCTTGAATCGCTTGTTTTCAGTTCCGAGGAACTTTCTGAATCGCGGTTACAGTCTTTGAGGAAATTCTCGAAGGATTTTGCGGGATTTATTGGGGTTTTAGTTGGGAATCTGGGCAGCCAATGCTGTTAGCTTCGTTTCGAGTTCAAAGAATTTTTGGGTGATTAGGGTTCGTCGATGTCTTGGGCTAGCGCGGAAGATATTTACCTTTCCACTTCTCTTGCCAATTACCTTGACAGTATGTTGCTTCAGTTTTGTTTTTTGTTTATTTGAAGTTTAATGCAACTGGGTTCATGGGGTTTGCCTATTTTGTGTTGTGTTTGTCTCTTCATCATCATGGGTTTTGGTTTCAAATTGTTATTTTACTGCAACTCTTTGATTGGGAATGGTTTTTTACTTGATTGTTGTTTTCCATAGAGTAATGATGTAACCTTGTGGAGATGTTGCTGGTTGGCATAATAGTTGTCTGTTGACTGATTGTTAATTGGATATGGAATTCATTATTGAATTGTTAAGTTTTTTTAGAGCACTAGCTCTTTGTGTATCTAGATTTGTGGCTTGCCCAACGTGTCACCAAGTTTAGTGAAATGCATGAATGGGGATCAACTTAACTTTTTTGGTGAACATTGGTAATGTAAAAGACGATATTTGACTCGAGTGTACTTTTAAGAGATTTTAGTAAAAAAAACGTTTTTATTTGGTGAATGTCTTTTAGGTCCCTCTTCTTTTAAAGAGATAATGGATGAGTTCATAAGAAGAGTACACCTTGGTGTTATTTCATATATGTATCTTGACAATTCTCATGGGATAGACTGTCTGACCCTGGAACATTTGGTTGCCAAGGTAACCTGTAGGAAATTAATTTACAGGTAGGTGACCGTTGTAGATTGAACTCACAACATTGTTGTTCTCCAAGGCCCTCTTGAACCTAGTCCAATATATGATCAACCCATTATGAAATTTTACTTATAAAAATTAGTTTTTCACTTAGATATTCTAGATATGACCAGGTGATAGTGATACCGCTTTGAATGAGCTTGCCGTGGTCAACTATAGTTGACTTGTCTTTTCACCTTTCCTATCACCATATGCAATTGTCTAGCTCTACTTGAAAATATTTATGTCAACTTTGATCTGACATGATCAAATAGGAGAATTTTATGGGATAGTAGATAATTTACCCTTTCTCTTGTGGATAATATTTTAGTATTAGAACTAGTGCAACAAACAGCACTGATGTTCCTGTGTTAGTATTGCTGAAAAGCTTCTGTACAGCTATATCTTCCTTCTAAATGATTGTTTGGTTGTAGACTGCTAGGAAAGAATTGAAACACATTGTTATAGTTCTTCTGACATTTCATTAATTGCCTTTGCATGATTGAAGCAAGTTAGAAAACCATATTATTTGTTGATTTCAGCATGTATGCATTCTTACGATTGTTTTGTAAAGGATGGGGAAAGCTAGTGTTTCTACTAATGGCATGAAATTGTTTAGTTAAATCATGCATCTGTATTTTGTTTTCATACATTAGTAGAGTTGTTCTAACGAAAATTTCAATGTATAGAGAAGGTCCTTGTACTACTTCGAGATGGTCGAAAGCTATTAGGGATACTCCGTTCATTTGATCAATTTGGTATGTTTCTTACTGAAACTTTACATGGTTTGGTATTTTTTTTACCGCATTAACATTCACCTAGACTTGAAGAACCAATTGTTTCTATTTTCAGCAAATGCTGTTCTTGAAGGATCCTGTGAAAGGGTTATTGTTGGTGACCTTTACAGCGATATTCCTTTAGGTCTCTATGTAATTCGAGGGGAAAACGTAGTTTTACTTGGCGAGCTGGTAGGAGGAACCTCGTATTTATTTGCCTTTTACCCATCCTTCTTAGACCTCCTAAATTTTTTCTTTTGGGCTTTATAGGACTTGGAGAAGGATGAGCTCCCTCCACACATGACTCATGTCTCTGCTGTGGAGATTAAAAAGGTAAGTGATGTTGACTTCTTATATCTTTGTCTGAACTCTTCCATTAGATTTATTAAACATTACACATCATTGATTTTTGCTCATGTCTGAAATTAGTCTTCTGTGTGCTGGATGATATTTTTGCTAAACTAGCATACACCCTTTTGCTTCTGTAGTTGTATATAAATCTGTTAGGTATTTACAAACTAGAATCTATTATTATTCCAGGCTCAAAAAGCAGAGAGAGAGGCTACAGATCTTAAAGGTACAATCAGGAAAAGACTGGAGTTCCTTGATCTGGATTAATTGCTGTTTCATAATCTTGAATTTGTTAGCTTTCTTGTTCGCAAGTTCTACAGCTTCTCTCGTTCATTGCCCTGTAAGTTAATCTTATCACATGTTTTTTTTTTTAATGGACAACTGAGAGCCTATTTTTGTGGCCACTAGAACTCAAACATTATGTTGCTGACCTTCAATTTATCATGTAATATTTTATTCCATAAATAAAGACCCATTCCTCTTCCCCCCAAAGCCAAAATTTACTTTTCTTTTGA

mRNA sequence

AAATAATAAAGCCCTAGAAATTAGCATAAGTGGAACGCAAAATTCTCAGTACAACTGAAAACCAAATCCAGACCAAGGCTGCAGCTGGTGGTTGAAGCCCTAACTTTGTTCTGTTTTTGTGTTTTCAATTTCTACAATTTAAACTCTCTACAAATTGGATCTCAGCGCTTCCTTACCGCTTTGGATTCGTCAATTCGTGTTCGCAGTTTTCTCAAATCTTTACCAGACCGGAAACTGCGTTCTTGAATCGCTTGTTTTCAGTTCCGAGGAACTTTCTGAATCGCGGTTACAGTCTTTGAGGAAATTCTCGAAGGATTTTGCGGGATTTATTGGGGTTTTAGTTGGGAATCTGGGCAGCCAATGCTGTTAGCTTCGTTTCGAGTTCAAAGAATTTTTGGGTGATTAGGGTTCGTCGATGTCTTGGGCTAGCGCGGAAGATATTTACCTTTCCACTTCTCTTGCCAATTACCTTGACAAGAAGGTCCTTGTACTACTTCGAGATGGTCGAAAGCTATTAGGGATACTCCGTTCATTTGATCAATTTGCAAATGCTGTTCTTGAAGGATCCTGTGAAAGGGTTATTGTTGGTGACCTTTACAGCGATATTCCTTTAGGTCTCTATGTAATTCGAGGGGAAAACGTAGTTTTACTTGGCGAGCTGGACTTGGAGAAGGATGAGCTCCCTCCACACATGACTCATGTCTCTGCTGTGGAGATTAAAAAGGCTCAAAAAGCAGAGAGAGAGGCTACAGATCTTAAAGGTACAATCAGGAAAAGACTGGAGTTCCTTGATCTGGATTAATTGCTGTTTCATAATCTTGAATTTGTTAGCTTTCTTGTTCGCAAGTTCTACAGCTTCTCTCGTTCATTGCCCTGTAAGTTAATCTTATCACATGTTTTTTTTTTTAATGGACAACTGAGAGCCTATTTTTGTGGCCACTAGAACTCAAACATTATGTTGCTGACCTTCAATTTATCATGTAATATTTTATTCCATAAATAAAGACCCATTCCTCTTCCCCCCAAAGCCAAAATTTACTTTTCTTTTGA

Coding sequence (CDS)

ATGTCTTGGGCTAGCGCGGAAGATATTTACCTTTCCACTTCTCTTGCCAATTACCTTGACAAGAAGGTCCTTGTACTACTTCGAGATGGTCGAAAGCTATTAGGGATACTCCGTTCATTTGATCAATTTGCAAATGCTGTTCTTGAAGGATCCTGTGAAAGGGTTATTGTTGGTGACCTTTACAGCGATATTCCTTTAGGTCTCTATGTAATTCGAGGGGAAAACGTAGTTTTACTTGGCGAGCTGGACTTGGAGAAGGATGAGCTCCCTCCACACATGACTCATGTCTCTGCTGTGGAGATTAAAAAGGCTCAAAAAGCAGAGAGAGAGGCTACAGATCTTAAAGGTACAATCAGGAAAAGACTGGAGTTCCTTGATCTGGATTAA

Protein sequence

MSWASAEDIYLSTSLANYLDKKVLVLLRDGRKLLGILRSFDQFANAVLEGSCERVIVGDLYSDIPLGLYVIRGENVVLLGELDLEKDELPPHMTHVSAVEIKKAQKAEREATDLKGTIRKRLEFLDLD

Homology

[Close]

BLAST of Sed0026729.1 vs. NCBI nr
Match: XP_004141715.1 (sm-like protein LSM1B [Cucumis sativus] >XP_008462280.1 PREDICTED: sm-like protein LSM1B [Cucumis melo] >XP_022954404.1 sm-like protein LSM1B [Cucurbita moschata] >XP_022954405.1 sm-like protein LSM1B [Cucurbita moschata] >XP_022992441.1 sm-like protein LSM1B [Cucurbita maxima] >XP_022992442.1 sm-like protein LSM1B [Cucurbita maxima] >XP_023547534.1 sm-like protein LSM1B [Cucurbita pepo subsp. pepo] >XP_023547535.1 sm-like protein LSM1B [Cucurbita pepo subsp. pepo] >XP_038897086.1 sm-like protein LSM1B [Benincasa hispida] >KAA0059385.1 sm-like protein LSM1B [Cucumis melo var. makuwa] >KAG6575433.1 Sm-like protein LSM1B, partial [Cucurbita argyrosperma subsp. sororia] >KAG7013976.1 Sm-like protein LSM1B [Cucurbita argyrosperma subsp. argyrosperma] >KGN45472.1 hypothetical protein Csa_015989 [Cucumis sativus] >TYK03941.1 sm-like protein LSM1B [Cucumis melo var. makuwa])

HSP 1 Score: 248.4 bits (633), Expect = 3.2e-62
Identity = 126/128 (98.44%), Postives = 128/128 (100.00%), Query Frame = 0


Query: 1   MSWASAEDIYLSTSLANYLDKKVLVLLRDGRKLLGILRSFDQFANAVLEGSCERVIVGDL 60
           MSWASAEDIYLSTSLANYLDKKVLVLLRDGRKLLGILRSFDQFANAVLEGSCERVIVGDL
Sbjct: 1   MSWASAEDIYLSTSLANYLDKKVLVLLRDGRKLLGILRSFDQFANAVLEGSCERVIVGDL 60

Query: 61  YSDIPLGLYVIRGENVVLLGELDLEKDELPPHMTHVSAVEIKKAQKAEREATDLKGTIRK 120
           YSDIPLGLYVIRGENVVLLGELDLEK+ELPPHMTHVSAVEIK+AQKAEREATDLKGTIRK
Sbjct: 61  YSDIPLGLYVIRGENVVLLGELDLEKEELPPHMTHVSAVEIKRAQKAEREATDLKGTIRK 120

Query: 121 RLEFLDLD 129
           RLEFLDLD
Sbjct: 121 RLEFLDLD 128

[Close]

BLAST of Sed0026729.1 vs. NCBI nr
Match: XP_022154301.1 (sm-like protein LSM1B [Momordica charantia])

HSP 1 Score: 246.9 bits (629), Expect = 9.4e-62
Identity = 125/128 (97.66%), Postives = 128/128 (100.00%), Query Frame = 0


Query: 1   MSWASAEDIYLSTSLANYLDKKVLVLLRDGRKLLGILRSFDQFANAVLEGSCERVIVGDL 60
           MSWASAEDIYLSTSLANYLDKKVLVLLRDGRKLLGILRSFDQFANAVLEGSCERVIVGDL
Sbjct: 1   MSWASAEDIYLSTSLANYLDKKVLVLLRDGRKLLGILRSFDQFANAVLEGSCERVIVGDL 60

Query: 61  YSDIPLGLYVIRGENVVLLGELDLEKDELPPHMTHVSAVEIKKAQKAEREATDLKGTIRK 120
           YSDIPLGLYVIRGENVVLLGELDLEK+ELPPHMTHVSAVEIK+AQKAEREA+DLKGTIRK
Sbjct: 61  YSDIPLGLYVIRGENVVLLGELDLEKEELPPHMTHVSAVEIKRAQKAEREASDLKGTIRK 120

Query: 121 RLEFLDLD 129
           RLEFLDLD
Sbjct: 121 RLEFLDLD 128

[Close]

BLAST of Sed0026729.1 vs. NCBI nr
Match: XP_022964148.1 (sm-like protein LSM1B [Cucurbita moschata] >XP_022964149.1 sm-like protein LSM1B [Cucurbita moschata] >XP_022999982.1 sm-like protein LSM1B [Cucurbita maxima] >KAG6593561.1 Sm-like protein LSM1B, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 245.7 bits (626), Expect = 2.1e-61
Identity = 124/128 (96.88%), Postives = 128/128 (100.00%), Query Frame = 0


Query: 1   MSWASAEDIYLSTSLANYLDKKVLVLLRDGRKLLGILRSFDQFANAVLEGSCERVIVGDL 60
           MSWASAEDIYLSTSLANYLDKKVLVLLRDGRKLLGILRSFDQFANAVLEGSCERVIVGDL
Sbjct: 1   MSWASAEDIYLSTSLANYLDKKVLVLLRDGRKLLGILRSFDQFANAVLEGSCERVIVGDL 60

Query: 61  YSDIPLGLYVIRGENVVLLGELDLEKDELPPHMTHVSAVEIKKAQKAEREATDLKGTIRK 120
           YSDIPLGLYVIRGENVVLLGEL++EK+ELPPHMTHVSAVEIK+AQKAEREATDLKGTIRK
Sbjct: 61  YSDIPLGLYVIRGENVVLLGELNMEKEELPPHMTHVSAVEIKRAQKAEREATDLKGTIRK 120

Query: 121 RLEFLDLD 129
           RLEFLDLD
Sbjct: 121 RLEFLDLD 128

[Close]

BLAST of Sed0026729.1 vs. NCBI nr
Match: XP_023515193.1 (sm-like protein LSM1B isoform X1 [Cucurbita pepo subsp. pepo] >XP_023515194.1 sm-like protein LSM1B isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 244.6 bits (623), Expect = 4.7e-61
Identity = 123/128 (96.09%), Postives = 128/128 (100.00%), Query Frame = 0


Query: 1   MSWASAEDIYLSTSLANYLDKKVLVLLRDGRKLLGILRSFDQFANAVLEGSCERVIVGDL 60
           MSWASAEDIYLSTSLANYLDKKVLVLLRDGRKLLGILRSFDQFANAVLEGSCERVIVGDL
Sbjct: 1   MSWASAEDIYLSTSLANYLDKKVLVLLRDGRKLLGILRSFDQFANAVLEGSCERVIVGDL 60

Query: 61  YSDIPLGLYVIRGENVVLLGELDLEKDELPPHMTHVSAVEIKKAQKAEREATDLKGTIRK 120
           YSDIPLGLYVIRGENVVLLGEL++EK+ELPPHMTHVSA+EIK+AQKAEREATDLKGTIRK
Sbjct: 61  YSDIPLGLYVIRGENVVLLGELNMEKEELPPHMTHVSAMEIKRAQKAEREATDLKGTIRK 120

Query: 121 RLEFLDLD 129
           RLEFLDLD
Sbjct: 121 RLEFLDLD 128

[Close]

BLAST of Sed0026729.1 vs. NCBI nr
Match: XP_021611176.1 (sm-like protein LSM1B [Manihot esculenta] >OAY53239.1 hypothetical protein MANES_04G147400v8 [Manihot esculenta])

HSP 1 Score: 230.3 bits (586), Expect = 9.1e-57
Identity = 114/128 (89.06%), Postives = 123/128 (96.09%), Query Frame = 0


Query: 1   MSWASAEDIYLSTSLANYLDKKVLVLLRDGRKLLGILRSFDQFANAVLEGSCERVIVGDL 60
           MSWA  EDIYLSTSLA+YLDKK+LVLLRDGRKLLGILRSFDQFANAVLEG+CERVIVGDL
Sbjct: 1   MSWAGPEDIYLSTSLASYLDKKLLVLLRDGRKLLGILRSFDQFANAVLEGACERVIVGDL 60

Query: 61  YSDIPLGLYVIRGENVVLLGELDLEKDELPPHMTHVSAVEIKKAQKAEREATDLKGTIRK 120
           Y DIPLGLYVIRGENVVL+GELDLE++ELPPHMT VSA EIK+AQKAEREATDLKGT+RK
Sbjct: 61  YCDIPLGLYVIRGENVVLIGELDLEREELPPHMTRVSAAEIKRAQKAEREATDLKGTMRK 120

Query: 121 RLEFLDLD 129
           R+EFLDLD
Sbjct: 121 RMEFLDLD 128

[Close]

BLAST of Sed0026729.1 vs. ExPASy Swiss-Prot
Match: Q8LFL8 (Sm-like protein LSM1B OS=Arabidopsis thaliana OX=3702 GN=LSM1B PE=1 SV=1)

HSP 1 Score: 207.6 bits (527), Expect = 8.3e-53
Identity = 100/128 (78.12%), Postives = 116/128 (90.62%), Query Frame = 0


Query: 1   MSWASAEDIYLSTSLANYLDKKVLVLLRDGRKLLGILRSFDQFANAVLEGSCERVIVGDL 60
           MSWA  E+IYLSTSLA+YLD+K+LVLLRDGRKL+G LRSFDQFANAVLEG+CERVIVG+ 
Sbjct: 1   MSWAGPEEIYLSTSLASYLDRKLLVLLRDGRKLMGTLRSFDQFANAVLEGACERVIVGEQ 60

Query: 61  YSDIPLGLYVIRGENVVLLGELDLEKDELPPHMTHVSAVEIKKAQKAEREATDLKGTIRK 120
           Y DIPLGLYVIRGENVVL+GELD E++ELPPHM  VS  EIK+AQK EREA++L+GT+RK
Sbjct: 61  YCDIPLGLYVIRGENVVLIGELDTEREELPPHMIRVSEAEIKRAQKVEREASELRGTMRK 120

Query: 121 RLEFLDLD 129
           R+EFLD D
Sbjct: 121 RMEFLDFD 128

[Close]

BLAST of Sed0026729.1 vs. ExPASy Swiss-Prot
Match: Q945P8 (Sm-like protein LSM1A OS=Arabidopsis thaliana OX=3702 GN=LSM1A PE=1 SV=1)

HSP 1 Score: 198.0 bits (502), Expect = 6.6e-50
Identity = 98/128 (76.56%), Postives = 113/128 (88.28%), Query Frame = 0


Query: 1   MSWASAEDIYLSTSLANYLDKKVLVLLRDGRKLLGILRSFDQFANAVLEGSCERVIVGDL 60
           MSWA+ +DI+ STSLA YLDKK+LVLLRDGRKL+G+LRSFDQFANAVLE + ERVIVGDL
Sbjct: 1   MSWAAPDDIFFSTSLAAYLDKKLLVLLRDGRKLMGLLRSFDQFANAVLEEAYERVIVGDL 60

Query: 61  YSDIPLGLYVIRGENVVLLGELDLEKDELPPHMTHVSAVEIKKAQKAEREATDLKGTIRK 120
           Y DIPLGLY+IRGENVVL+GELD+EK+ELP HM  V   EIK+AQKAE+E   LKGT+RK
Sbjct: 61  YCDIPLGLYIIRGENVVLIGELDVEKEELPAHMVQVPEAEIKRAQKAEKEEMLLKGTMRK 120

Query: 121 RLEFLDLD 129
           R+EFLDLD
Sbjct: 121 RMEFLDLD 128

[Close]

BLAST of Sed0026729.1 vs. ExPASy Swiss-Prot
Match: P87173 (U6 snRNA-associated Sm-like protein LSm1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=lsm1 PE=1 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 3.1e-23
Identity = 57/115 (49.57%), Postives = 83/115 (72.17%), Query Frame = 0


Query: 12  STSLANYLDKKVLVLLRDGRKLLGILRSFDQFANAVLEGSCERVIVGDLYSDIPLGLYVI 71
           S SL +Y+D+KV+V+LRDG+KL+GILRSFDQFAN +L+ + ER+ V D+Y DI  G+Y++
Sbjct: 13  SGSLVDYVDRKVIVVLRDGKKLIGILRSFDQFANLMLQYTIERIYVDDMYGDIDRGVYIV 72

Query: 72  RGENVVLLGELDLEKD-ELPPHMTHVSAVEIKKAQKAEREATDLKGTIRKRLEFL 126
           RGENVVLLGELDL+K+ +    +  + A E+    K   E  + K  IR++ ++L
Sbjct: 73  RGENVVLLGELDLDKEYDAVKQLRRMPAEELYPLAKLHEE--EKKKNIREKGKYL 125

[Close]

BLAST of Sed0026729.1 vs. ExPASy Swiss-Prot
Match: Q5E9Z8 (U6 snRNA-associated Sm-like protein LSm1 OS=Bos taurus OX=9913 GN=LSM1 PE=2 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 2.6e-22
Identity = 56/99 (56.57%), Postives = 71/99 (71.72%), Query Frame = 0


Query: 12  STSLANYLDKKVLVLLRDGRKLLGILRSFDQFANAVLEGSCERVIVGDLYSDIPLGLYVI 71
           + SL   +DKK LVLLRDGR L+G LRS DQFAN VL  + ER+ VG  Y DIP G++V+
Sbjct: 7   TASLIEDIDKKHLVLLRDGRTLIGFLRSIDQFANLVLHQTVERIHVGKKYGDIPRGIFVV 66

Query: 72  RGENVVLLGELDLEKDELPPHMTHVSAVEIKKAQKAERE 111
           RGENVVLLGE+DLEK+   P +  VS  EI + Q+ E++
Sbjct: 67  RGENVVLLGEIDLEKESDTP-LQQVSIEEILEEQRVEQQ 104

[Close]

BLAST of Sed0026729.1 vs. ExPASy Swiss-Prot
Match: Q54W83 (Probable U6 snRNA-associated Sm-like protein LSm1 OS=Dictyostelium discoideum OX=44689 GN=lsm1 PE=3 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 2.6e-22
Identity = 52/112 (46.43%), Postives = 80/112 (71.43%), Query Frame = 0


Query: 11  LSTSLANYLDKKVLVLLRDGRKLLGILRSFDQFANAVLEGSCERVIVGDLYSDIPLGLYV 70
           +S+ L + +DKK++V+LRDGRK +GI+R+FDQFAN VL+ + ER+ VGD YSD  LGL+ 
Sbjct: 1   MSSGLGDEVDKKLIVVLRDGRKFIGIMRTFDQFANIVLQDTIERIYVGDCYSDKNLGLFF 60

Query: 71  IRGENVVLLGELDLEKDELPPHMTHVSAVEIKKAQKAEREATDLKGTIRKRL 123
           IRG+NVV+LGE+D +K+     +  +S  EI KA   E+   + +  +++R+
Sbjct: 61  IRGDNVVILGEIDPDKEVQEKKLKKISWDEITKAAALEKIKKEEEEQLKRRI 112

[Close]

BLAST of Sed0026729.1 vs. ExPASy TrEMBL
Match: A0A6J1JPU7 (U6 snRNA-associated Sm-like protein LSm1 OS=Cucurbita maxima OX=3661 GN=LOC111488744 PE=3 SV=1)

HSP 1 Score: 248.4 bits (633), Expect = 1.6e-62
Identity = 126/128 (98.44%), Postives = 128/128 (100.00%), Query Frame = 0


Query: 1   MSWASAEDIYLSTSLANYLDKKVLVLLRDGRKLLGILRSFDQFANAVLEGSCERVIVGDL 60
           MSWASAEDIYLSTSLANYLDKKVLVLLRDGRKLLGILRSFDQFANAVLEGSCERVIVGDL
Sbjct: 1   MSWASAEDIYLSTSLANYLDKKVLVLLRDGRKLLGILRSFDQFANAVLEGSCERVIVGDL 60

Query: 61  YSDIPLGLYVIRGENVVLLGELDLEKDELPPHMTHVSAVEIKKAQKAEREATDLKGTIRK 120
           YSDIPLGLYVIRGENVVLLGELDLEK+ELPPHMTHVSAVEIK+AQKAEREATDLKGTIRK
Sbjct: 61  YSDIPLGLYVIRGENVVLLGELDLEKEELPPHMTHVSAVEIKRAQKAEREATDLKGTIRK 120

Query: 121 RLEFLDLD 129
           RLEFLDLD
Sbjct: 121 RLEFLDLD 128

[Close]

BLAST of Sed0026729.1 vs. ExPASy TrEMBL
Match: A0A6J1GSW8 (U6 snRNA-associated Sm-like protein LSm1 OS=Cucurbita moschata OX=3662 GN=LOC111456650 PE=3 SV=1)

HSP 1 Score: 248.4 bits (633), Expect = 1.6e-62
Identity = 126/128 (98.44%), Postives = 128/128 (100.00%), Query Frame = 0


Query: 1   MSWASAEDIYLSTSLANYLDKKVLVLLRDGRKLLGILRSFDQFANAVLEGSCERVIVGDL 60
           MSWASAEDIYLSTSLANYLDKKVLVLLRDGRKLLGILRSFDQFANAVLEGSCERVIVGDL
Sbjct: 1   MSWASAEDIYLSTSLANYLDKKVLVLLRDGRKLLGILRSFDQFANAVLEGSCERVIVGDL 60

Query: 61  YSDIPLGLYVIRGENVVLLGELDLEKDELPPHMTHVSAVEIKKAQKAEREATDLKGTIRK 120
           YSDIPLGLYVIRGENVVLLGELDLEK+ELPPHMTHVSAVEIK+AQKAEREATDLKGTIRK
Sbjct: 61  YSDIPLGLYVIRGENVVLLGELDLEKEELPPHMTHVSAVEIKRAQKAEREATDLKGTIRK 120

Query: 121 RLEFLDLD 129
           RLEFLDLD
Sbjct: 121 RLEFLDLD 128

[Close]

BLAST of Sed0026729.1 vs. ExPASy TrEMBL
Match: A0A5A7V0M1 (U6 snRNA-associated Sm-like protein LSm1 OS=Cucumis melo var. makuwa OX=1194695 GN=LSM1 PE=3 SV=1)

HSP 1 Score: 248.4 bits (633), Expect = 1.6e-62
Identity = 126/128 (98.44%), Postives = 128/128 (100.00%), Query Frame = 0


Query: 1   MSWASAEDIYLSTSLANYLDKKVLVLLRDGRKLLGILRSFDQFANAVLEGSCERVIVGDL 60
           MSWASAEDIYLSTSLANYLDKKVLVLLRDGRKLLGILRSFDQFANAVLEGSCERVIVGDL
Sbjct: 1   MSWASAEDIYLSTSLANYLDKKVLVLLRDGRKLLGILRSFDQFANAVLEGSCERVIVGDL 60

Query: 61  YSDIPLGLYVIRGENVVLLGELDLEKDELPPHMTHVSAVEIKKAQKAEREATDLKGTIRK 120
           YSDIPLGLYVIRGENVVLLGELDLEK+ELPPHMTHVSAVEIK+AQKAEREATDLKGTIRK
Sbjct: 61  YSDIPLGLYVIRGENVVLLGELDLEKEELPPHMTHVSAVEIKRAQKAEREATDLKGTIRK 120

Query: 121 RLEFLDLD 129
           RLEFLDLD
Sbjct: 121 RLEFLDLD 128

[Close]

BLAST of Sed0026729.1 vs. ExPASy TrEMBL
Match: A0A0A0KAS4 (U6 snRNA-associated Sm-like protein LSm1 OS=Cucumis sativus OX=3659 GN=LSM1 PE=3 SV=1)

HSP 1 Score: 248.4 bits (633), Expect = 1.6e-62
Identity = 126/128 (98.44%), Postives = 128/128 (100.00%), Query Frame = 0


Query: 1   MSWASAEDIYLSTSLANYLDKKVLVLLRDGRKLLGILRSFDQFANAVLEGSCERVIVGDL 60
           MSWASAEDIYLSTSLANYLDKKVLVLLRDGRKLLGILRSFDQFANAVLEGSCERVIVGDL
Sbjct: 1   MSWASAEDIYLSTSLANYLDKKVLVLLRDGRKLLGILRSFDQFANAVLEGSCERVIVGDL 60

Query: 61  YSDIPLGLYVIRGENVVLLGELDLEKDELPPHMTHVSAVEIKKAQKAEREATDLKGTIRK 120
           YSDIPLGLYVIRGENVVLLGELDLEK+ELPPHMTHVSAVEIK+AQKAEREATDLKGTIRK
Sbjct: 61  YSDIPLGLYVIRGENVVLLGELDLEKEELPPHMTHVSAVEIKRAQKAEREATDLKGTIRK 120

Query: 121 RLEFLDLD 129
           RLEFLDLD
Sbjct: 121 RLEFLDLD 128

[Close]

BLAST of Sed0026729.1 vs. ExPASy TrEMBL
Match: A0A1S3CGJ0 (U6 snRNA-associated Sm-like protein LSm1 OS=Cucumis melo OX=3656 GN=LOC103500677 PE=3 SV=1)

HSP 1 Score: 248.4 bits (633), Expect = 1.6e-62
Identity = 126/128 (98.44%), Postives = 128/128 (100.00%), Query Frame = 0


Query: 1   MSWASAEDIYLSTSLANYLDKKVLVLLRDGRKLLGILRSFDQFANAVLEGSCERVIVGDL 60
           MSWASAEDIYLSTSLANYLDKKVLVLLRDGRKLLGILRSFDQFANAVLEGSCERVIVGDL
Sbjct: 1   MSWASAEDIYLSTSLANYLDKKVLVLLRDGRKLLGILRSFDQFANAVLEGSCERVIVGDL 60

Query: 61  YSDIPLGLYVIRGENVVLLGELDLEKDELPPHMTHVSAVEIKKAQKAEREATDLKGTIRK 120
           YSDIPLGLYVIRGENVVLLGELDLEK+ELPPHMTHVSAVEIK+AQKAEREATDLKGTIRK
Sbjct: 61  YSDIPLGLYVIRGENVVLLGELDLEKEELPPHMTHVSAVEIKRAQKAEREATDLKGTIRK 120

Query: 121 RLEFLDLD 129
           RLEFLDLD
Sbjct: 121 RLEFLDLD 128

[Close]

BLAST of Sed0026729.1 vs. TAIR 10
Match: AT3G14080.1 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 207.6 bits (527), Expect = 5.9e-54
Identity = 100/128 (78.12%), Postives = 116/128 (90.62%), Query Frame = 0


Query: 1   MSWASAEDIYLSTSLANYLDKKVLVLLRDGRKLLGILRSFDQFANAVLEGSCERVIVGDL 60
           MSWA  E+IYLSTSLA+YLD+K+LVLLRDGRKL+G LRSFDQFANAVLEG+CERVIVG+ 
Sbjct: 1   MSWAGPEEIYLSTSLASYLDRKLLVLLRDGRKLMGTLRSFDQFANAVLEGACERVIVGEQ 60

Query: 61  YSDIPLGLYVIRGENVVLLGELDLEKDELPPHMTHVSAVEIKKAQKAEREATDLKGTIRK 120
           Y DIPLGLYVIRGENVVL+GELD E++ELPPHM  VS  EIK+AQK EREA++L+GT+RK
Sbjct: 61  YCDIPLGLYVIRGENVVLIGELDTEREELPPHMIRVSEAEIKRAQKVEREASELRGTMRK 120

Query: 121 RLEFLDLD 129
           R+EFLD D
Sbjct: 121 RMEFLDFD 128

[Close]

BLAST of Sed0026729.1 vs. TAIR 10
Match: AT3G14080.2 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 207.6 bits (527), Expect = 5.9e-54
Identity = 100/128 (78.12%), Postives = 116/128 (90.62%), Query Frame = 0


Query: 1   MSWASAEDIYLSTSLANYLDKKVLVLLRDGRKLLGILRSFDQFANAVLEGSCERVIVGDL 60
           MSWA  E+IYLSTSLA+YLD+K+LVLLRDGRKL+G LRSFDQFANAVLEG+CERVIVG+ 
Sbjct: 1   MSWAGPEEIYLSTSLASYLDRKLLVLLRDGRKLMGTLRSFDQFANAVLEGACERVIVGEQ 60

Query: 61  YSDIPLGLYVIRGENVVLLGELDLEKDELPPHMTHVSAVEIKKAQKAEREATDLKGTIRK 120
           Y DIPLGLYVIRGENVVL+GELD E++ELPPHM  VS  EIK+AQK EREA++L+GT+RK
Sbjct: 61  YCDIPLGLYVIRGENVVLIGELDTEREELPPHMIRVSEAEIKRAQKVEREASELRGTMRK 120

Query: 121 RLEFLDLD 129
           R+EFLD D
Sbjct: 121 RMEFLDFD 128

[Close]

BLAST of Sed0026729.1 vs. TAIR 10
Match: AT1G19120.1 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 198.0 bits (502), Expect = 4.7e-51
Identity = 98/128 (76.56%), Postives = 113/128 (88.28%), Query Frame = 0


Query: 1   MSWASAEDIYLSTSLANYLDKKVLVLLRDGRKLLGILRSFDQFANAVLEGSCERVIVGDL 60
           MSWA+ +DI+ STSLA YLDKK+LVLLRDGRKL+G+LRSFDQFANAVLE + ERVIVGDL
Sbjct: 1   MSWAAPDDIFFSTSLAAYLDKKLLVLLRDGRKLMGLLRSFDQFANAVLEEAYERVIVGDL 60

Query: 61  YSDIPLGLYVIRGENVVLLGELDLEKDELPPHMTHVSAVEIKKAQKAEREATDLKGTIRK 120
           Y DIPLGLY+IRGENVVL+GELD+EK+ELP HM  V   EIK+AQKAE+E   LKGT+RK
Sbjct: 61  YCDIPLGLYIIRGENVVLIGELDVEKEELPAHMVQVPEAEIKRAQKAEKEEMLLKGTMRK 120

Query: 121 RLEFLDLD 129
           R+EFLDLD
Sbjct: 121 RMEFLDLD 128

[Close]

BLAST of Sed0026729.1 vs. TAIR 10
Match: AT1G65700.1 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 64.7 bits (156), Expect = 6.2e-11
Identity = 32/77 (41.56%), Postives = 49/77 (63.64%), Query Frame = 0


Query: 12 STSLANYLDKKVLVLLRDGRKLLGILRSFDQFANAVLEGSCERVI-VGDLYSDIPLGLYV 71
          +T L   +D+ + V+  DGR ++G+L+ FDQ  N +L+ S ERV    +      LGLY+
Sbjct: 4  TTGLETLVDQIISVITNDGRNIVGVLKGFDQATNIILDESHERVFSTKEGVQQHVLGLYI 63

Query: 72 IRGENVVLLGELDLEKD 88
          IRG+N+ ++GELD E D
Sbjct: 64 IRGDNIGVIGELDEELD 80

[Close]

BLAST of Sed0026729.1 vs. TAIR 10
Match: AT1G65700.2 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 64.7 bits (156), Expect = 6.2e-11
Identity = 32/77 (41.56%), Postives = 49/77 (63.64%), Query Frame = 0


Query: 12 STSLANYLDKKVLVLLRDGRKLLGILRSFDQFANAVLEGSCERVI-VGDLYSDIPLGLYV 71
          +T L   +D+ + V+  DGR ++G+L+ FDQ  N +L+ S ERV    +      LGLY+
Sbjct: 4  TTGLETLVDQIISVITNDGRNIVGVLKGFDQATNIILDESHERVFSTKEGVQQHVLGLYI 63

Query: 72 IRGENVVLLGELDLEKD 88
          IRG+N+ ++GELD E D
Sbjct: 64 IRGDNIGVIGELDEELD 80

The following BLAST results are available for this feature:

BLAST of Sed0026729.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004141715.1	3.2e-62	98.44	sm-like protein LSM1B [Cucumis sativus] >XP_008462280.1 PREDICTED: sm-like prote...	[more]
XP_022154301.1	9.4e-62	97.66	sm-like protein LSM1B [Momordica charantia]	[more]
XP_022964148.1	2.1e-61	96.88	sm-like protein LSM1B [Cucurbita moschata] >XP_022964149.1 sm-like protein LSM1B...	[more]
XP_023515193.1	4.7e-61	96.09	sm-like protein LSM1B isoform X1 [Cucurbita pepo subsp. pepo] >XP_023515194.1 sm...	[more]
XP_021611176.1	9.1e-57	89.06	sm-like protein LSM1B [Manihot esculenta] >OAY53239.1 hypothetical protein MANES...	[more]

BLAST of Sed0026729.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8LFL8	8.3e-53	78.13	Sm-like protein LSM1B OS=Arabidopsis thaliana OX=3702 GN=LSM1B PE=1 SV=1	[more]
Q945P8	6.6e-50	76.56	Sm-like protein LSM1A OS=Arabidopsis thaliana OX=3702 GN=LSM1A PE=1 SV=1	[more]
P87173	3.1e-23	49.57	U6 snRNA-associated Sm-like protein LSm1 OS=Schizosaccharomyces pombe (strain 97...	[more]
Q5E9Z8	2.6e-22	56.57	U6 snRNA-associated Sm-like protein LSm1 OS=Bos taurus OX=9913 GN=LSM1 PE=2 SV=1	[more]
Q54W83	2.6e-22	46.43	Probable U6 snRNA-associated Sm-like protein LSm1 OS=Dictyostelium discoideum OX...	[more]

BLAST of Sed0026729.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JPU7	1.6e-62	98.44	U6 snRNA-associated Sm-like protein LSm1 OS=Cucurbita maxima OX=3661 GN=LOC11148...	[more]
A0A6J1GSW8	1.6e-62	98.44	U6 snRNA-associated Sm-like protein LSm1 OS=Cucurbita moschata OX=3662 GN=LOC111...	[more]
A0A5A7V0M1	1.6e-62	98.44	U6 snRNA-associated Sm-like protein LSm1 OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A0A0KAS4	1.6e-62	98.44	U6 snRNA-associated Sm-like protein LSm1 OS=Cucumis sativus OX=3659 GN=LSM1 PE=3...	[more]
A0A1S3CGJ0	1.6e-62	98.44	U6 snRNA-associated Sm-like protein LSm1 OS=Cucumis melo OX=3656 GN=LOC103500677...	[more]

BLAST of Sed0026729.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G14080.1	5.9e-54	78.13	Small nuclear ribonucleoprotein family protein	[more]
AT3G14080.2	5.9e-54	78.13	Small nuclear ribonucleoprotein family protein	[more]
AT1G19120.1	4.7e-51	76.56	Small nuclear ribonucleoprotein family protein	[more]
AT1G65700.1	6.2e-11	41.56	Small nuclear ribonucleoprotein family protein	[more]
AT1G65700.2	6.2e-11	41.56	Small nuclear ribonucleoprotein family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001163	LSM domain, eukaryotic/archaea-type	SMART	SM00651	Sm3	coord: 13..81 e-value: 4.9E-21 score: 85.9
IPR001163	LSM domain, eukaryotic/archaea-type	PFAM	PF01423	LSM	coord: 14..80 e-value: 9.0E-19 score: 66.9
None	No IPR available	GENE3D	2.30.30.100		coord: 12..124 e-value: 2.8E-34 score: 119.5
None	No IPR available	PANTHER	PTHR15588:SF11	U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN LSM1	coord: 1..127
IPR044642	U6 snRNA-associated Sm-like protein Lsm1/8	PANTHER	PTHR15588	LSM1	coord: 1..127
IPR034104	Sm-like protein Lsm1	CDD	cd01728	LSm1	coord: 12..82 e-value: 5.60726E-39 score: 123.78
IPR010920	LSM domain superfamily	SUPERFAMILY	50182	Sm-like ribonucleoproteins	coord: 13..84

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Sed0026729	Sed0026729	gene

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0026729.1-five_prime_utr	Sed0026729.1-five_prime_utr-LG04:32010516..32010930	five_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0026729.1-exon	Sed0026729.1-exon-LG04:32010516..32010991	exon
Sed0026729.1-exon	Sed0026729.1-exon-LG04:32012319..32012387	exon
Sed0026729.1-exon	Sed0026729.1-exon-LG04:32012482..32012597	exon
Sed0026729.1-exon	Sed0026729.1-exon-LG04:32012676..32012738	exon
Sed0026729.1-exon	Sed0026729.1-exon-LG04:32012946..32013271	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0026729.1-cds	Sed0026729.1-cds-LG04:32010931..32010991	CDS
Sed0026729.1-cds	Sed0026729.1-cds-LG04:32012319..32012387	CDS
Sed0026729.1-cds	Sed0026729.1-cds-LG04:32012482..32012597	CDS
Sed0026729.1-cds	Sed0026729.1-cds-LG04:32012676..32012738	CDS
Sed0026729.1-cds	Sed0026729.1-cds-LG04:32012946..32013023	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0026729.1-three_prime_utr	Sed0026729.1-three_prime_utr-LG04:32013024..32013271	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Sed0026729.1	Sed0026729.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000956	nuclear-transcribed mRNA catabolic process
biological_process	GO:0000290	deadenylation-dependent decapping of nuclear-transcribed mRNA
biological_process	GO:0006397	mRNA processing
cellular_component	GO:1990726	Lsm1-7-Pat1 complex
cellular_component	GO:0000932	P-body
molecular_function	GO:0000339	RNA cap binding