Sed0010654 (gene) Chayote v1

Overview


Name	Sed0010654
Type	gene
Organism	Sechium edule (Chayote v1)
Description	protein POLYCHOME
Location	LG03: 17016082 .. 17019516 (+)
RNA-Seq Expression	Sed0010654
Synteny	Sed0010654

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAAAAAAGAAAAACCAAAATCGCTTTCCCTCAAACAAGCCCCGTCTTGGTCAAAGGAAAATCTCTAAGGTATGAATCAATTCCAGTCTTCTTTATTTCCATTTCACTGTAGAGATTCTAGGAACGAAATTTATTTTTCATTGTAGTTTTCTTGTAATTTGAAATGAAATGAATGTTCTCATTGTTTGTTTGCTTCCAAAGTTCCATAATGTCGGAATCAAGGGATAGATTGGAGAGGCAAGTGGACTATGCGGAGGTTTTTGCTCGTCGGAGATCGGACGAGCCAGAAATGAGCACCAGTTTCGTAGGAACTCCGATTGCGGCTCGAGAAAGAGCTACGAATCTCGGACCGCGACGCGGTTTTGATTCTCCAGCATCTGTTGTTGGAATTGGGCTTAGTAGATTTATGTACAGATCTCCAGTTTTGAGTCGCGAGAATTCTGGGGCTGGGAGTTTTAGGAGGTGTAGATCACGGAGGAGGAATAGTGTTTTGCCCATTTGGTATCCAAGAACCCCACTTCGTGATATTACTGCTTTTGTGAGGGTAAATTACTATGATTCCCCTTTTATTTTTGTTATGTTTTGTTCTTGTTTTCTGGAATTTCTCTGCTTATAATTGTCTTTTGAATGCTTCATTTAATCCACAAGGTTTCCATACATGTTATCTGATACTTAATATTCATAACCAGTAATCTGTATCTCTTTTAAAGATGTTGAGAACTCCTCATGTTTCTAACGTGGAACAAGATGAACGAAAGACCATTTTGAATTAGATCCAAGTGTGTGGATTGAAATACTTGCTTTGGTTATTAGCTTGGATTGAATCCGAATTTGGAGGATCAAATTCTTGCTAAAGCTTATCCCTGCATGGGTGGAGTCCAAATCACCTGCATAAGTTTTACCCACTTGGGTCGAATTGAATTTGTGAAACCAATAACCCATAGATGGTGTTTGGATGAGTAATTGCATGAGTGATTATTTTGACGATGTAGATTTTTGTAGAGGAGTTGCAAGCAATAGTTTGTTTGGATGTGAATTTTTATAGAGGAGTTGCAGTCAATAACTTGTTTGAATGTAGATTTTGATAAAGATGTCACAAAATTGAGTGGTTTTAAGAAGAGGAGTTGGTTTTAACTTTTGAGACGTTGAAAACAAGTGATTAGAAATGATTGGTTATTTTAAATGGTTATAATAGTTTGTTTGAAAATAGTTTTTTGAAGAGAGGTAGTAAAATCTCATTTATAATAGCTCGTTAAATACTAACAACAAACACCTACTTAGAGAGCCTTGATACCATATTAAATAATATGAGCTTCTTGGTTTTGAGGTGAAATCTCATTTTATCTGTTTGGATTTGTTTGGTTGATATTAATCTCTTATTTTCTGTAGTTATTGCGATTCTTGTTTCTACATTTTCAGTTGGTAGCATTTCATTTGATTTGTGTTGATTTTTAATTGAAACTTTTTAGTTCGTTTGTCTAATCCATTTTGTGAATCCTTATATTAGATCACTTTCATTTCCTTTTAAGTTAATTAATTAATAAATTTCCAGTGTTTTTAAGCTATTGGCTACCTACTTGTCTGTCTAAAAAGAAGATTCTAAAGTTTTGTAACGTCCACAGTTAATTAAAGTTAGCCCAATGATTTCAAATGGAACATCAACAATCTGGATAATGACATCTTGTCCACAATTACTTAAAGTTGCCTAATTCTTTTACTTTTGAGTATTTTTATTTATTTGTTTTTTTGTTCCAATGACTTTCTAGGCTTAAATTTGACCTGTTAGTATAACTACTTTTTGATGGACTCAATATGCTTCGTCCGAGTGCTAGAATGACTGACTAGGGAATAAATTAACATTTTGAGATCGGTAATTTGGATGTAAAATTGCTGATTTTCAAGGAAATGCGAATTTATAGAACTTGAGTGAGAATAATTATCAAATTTATGTTTTCAAGTAACTAGGTACTATGCATTATTGACTTTTGGTTTATTAAGGTTATATAGAAGTTTATTTGTTAAACTTAATGTAGGACATTATATATTGCTCTTTCGTGTAAATATTATCATACAACAATGTAAGCTAATAATTATCATTATTTGAGTTCAAAGCATTATTATGATTTATGAGCATCTTTGTAATGTATTAAAATTGTTCTATGACTTTTAAAAATGTATAGTGTAAATGTCTGCTTTTGTGTCCTCATCTTAATTCTTACCAAAAGTATCATGTAACCATATATTAACCATATCTTATTTATGCAATTCATATCAAATCATTGCTAATTCTTAAATTGCTTTGCTGATATTGTTGCTGTCAATGTGAAAAATTTCCCCATCTTTTCACGGGTTTCATTTGCAACTGCATTTAGAAGTCTTTACTCTGATATGTCCTTTAACCAAAGCGAATTCTCTTCAAATAAATGCATATGAACTCAATATATTGTATTAATTCTGTAAATTCCAATTTCAGGTGTTATAAACTTATTATGCTCTTATCTTGTATGTCATGCACAATCACAATAGCACCTGTGTTGTTCCTGGAGATCTCTCCTTTCCCAGTTTTTCATTTGGGGTTGTGGTCTTCAAATAGTGTTCTTAATTTGGAGTGAATCTTAATGTTTGAGCAGGCAATTGAAAGAACAAGAGCTCGATTGAGAGAAAATGAAGGCGAAGGAGATGATAATAATAGTCCAGCTCCCTCCAACGAAAGAGCTTTAGATTTGACCACATTTGTTGCAGGTGATGATCAAGAGCCTAGTATTTCTGTGGTGACCCCAAAACCAAAGGTAGGCAAAGTAATAAAGATTCTTCGCAGAATCACAAATGTGGAAGAATCCGAGCTGCTTACACCGCAGAAGAAGCTGTTGAACTCCATTGACAAAGTGGAGAAAGTAGTAAGGGAAGAGTTGCAGAAACTGAGAAGGACACCGAGTGCCAAGAGGGCCGAGAGGGAAAAAAGAGTTCGCACTTTGATGTCATTTCGTTGATTATTATTATTTTTTAGTTCAACTACAATTGAGGAAAAGAGATTTGAACACATGATCTCTTGGTCATGGAAACACATGGATGCCGTTTAGCTACTGTGATTATTGGCATCATTTTCAGATTTAGTTCAACACAATCACTCCTAGAATTGGGGAGACCAGATTCACTCAAATCTTAGACCGTCCAATCATCTGCTGATGATTCTTTGGTAAACAGTGCTGGTTGATCAGATGGAGGAGTCTCATCTTCTGATGACATCTCTAGAAGACTATTATGTTACTTTTCTGTTGAATGAATTCTTTTCATTTTCAAAAGCCTTGTGAGTTTTGTTTACTGCAAATGTAGATAGTCAAAGTAGGCCTTTTTGGGGTGGAAATCATGTATATAGAATATTATATTCGTGCTCTTAGACTTTAATTTTTGTCTTTCATTATCTGATAAGATGC

mRNA sequence

AAAAAAAAAGAAAAACCAAAATCGCTTTCCCTCAAACAAGCCCCGTCTTGGTCAAAGGAAAATCTCTAAGTTCCATAATGTCGGAATCAAGGGATAGATTGGAGAGGCAAGTGGACTATGCGGAGGTTTTTGCTCGTCGGAGATCGGACGAGCCAGAAATGAGCACCAGTTTCGTAGGAACTCCGATTGCGGCTCGAGAAAGAGCTACGAATCTCGGACCGCGACGCGGTTTTGATTCTCCAGCATCTGTTGTTGGAATTGGGCTTAGTAGATTTATGTACAGATCTCCAGTTTTGAGTCGCGAGAATTCTGGGGCTGGGAGTTTTAGGAGGTGTAGATCACGGAGGAGGAATAGTGTTTTGCCCATTTGGTATCCAAGAACCCCACTTCGTGATATTACTGCTTTTGTGAGGGCAATTGAAAGAACAAGAGCTCGATTGAGAGAAAATGAAGGCGAAGGAGATGATAATAATAGTCCAGCTCCCTCCAACGAAAGAGCTTTAGATTTGACCACATTTGTTGCAGGTGATGATCAAGAGCCTAGTATTTCTGTGGTGACCCCAAAACCAAAGGTAGGCAAAGTAATAAAGATTCTTCGCAGAATCACAAATGTGGAAGAATCCGAGCTGCTTACACCGCAGAAGAAGCTGTTGAACTCCATTGACAAAGTGGAGAAAGTAGTAAGGGAAGAGTTGCAGAAACTGAGAAGGACACCGAGTGCCAAGAGGGCCGAGAGGGAAAAAAGAGTTCGCACTTTGATGTCATTTCGTTGATTATTATTATTTTTTAGTTCAACTACAATTGAGGAAAAGAGATTTGAACACATGATCTCTTGGTCATGGAAACACATGGATGCCGTTTAGCTACTGTGATTATTGGCATCATTTTCAGATTTAGTTCAACACAATCACTCCTAGAATTGGGGAGACCAGATTCACTCAAATCTTAGACCGTCCAATCATCTGCTGATGATTCTTTGGTAAACAGTGCTGGTTGATCAGATGGAGGAGTCTCATCTTCTGATGACATCTCTAGAAGACTATTATGTTACTTTTCTGTTGAATGAATTCTTTTCATTTTCAAAAGCCTTGTGAGTTTTGTTTACTGCAAATGTAGATAGTCAAAGTAGGCCTTTTTGGGGTGGAAATCATGTATATAGAATATTATATTCGTGCTCTTAGACTTTAATTTTTGTCTTTCATTATCTGATAAGATGC

Coding sequence (CDS)

ATGTCGGAATCAAGGGATAGATTGGAGAGGCAAGTGGACTATGCGGAGGTTTTTGCTCGTCGGAGATCGGACGAGCCAGAAATGAGCACCAGTTTCGTAGGAACTCCGATTGCGGCTCGAGAAAGAGCTACGAATCTCGGACCGCGACGCGGTTTTGATTCTCCAGCATCTGTTGTTGGAATTGGGCTTAGTAGATTTATGTACAGATCTCCAGTTTTGAGTCGCGAGAATTCTGGGGCTGGGAGTTTTAGGAGGTGTAGATCACGGAGGAGGAATAGTGTTTTGCCCATTTGGTATCCAAGAACCCCACTTCGTGATATTACTGCTTTTGTGAGGGCAATTGAAAGAACAAGAGCTCGATTGAGAGAAAATGAAGGCGAAGGAGATGATAATAATAGTCCAGCTCCCTCCAACGAAAGAGCTTTAGATTTGACCACATTTGTTGCAGGTGATGATCAAGAGCCTAGTATTTCTGTGGTGACCCCAAAACCAAAGGTAGGCAAAGTAATAAAGATTCTTCGCAGAATCACAAATGTGGAAGAATCCGAGCTGCTTACACCGCAGAAGAAGCTGTTGAACTCCATTGACAAAGTGGAGAAAGTAGTAAGGGAAGAGTTGCAGAAACTGAGAAGGACACCGAGTGCCAAGAGGGCCGAGAGGGAAAAAAGAGTTCGCACTTTGATGTCATTTCGTTGA

Protein sequence

MSESRDRLERQVDYAEVFARRRSDEPEMSTSFVGTPIAARERATNLGPRRGFDSPASVVGIGLSRFMYRSPVLSRENSGAGSFRRCRSRRRNSVLPIWYPRTPLRDITAFVRAIERTRARLRENEGEGDDNNSPAPSNERALDLTTFVAGDDQEPSISVVTPKPKVGKVIKILRRITNVEESELLTPQKKLLNSIDKVEKVVREELQKLRRTPSAKRAEREKRVRTLMSFR

Homology

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BLAST of Sed0010654 vs. NCBI nr
Match: XP_022966440.1 (protein POLYCHOME [Cucurbita maxima])

HSP 1 Score: 318.5 bits (815), Expect = 4.6e-83
Identity = 188/256 (73.44%), Postives = 205/256 (80.08%), Query Frame = 0


Query: 1   MSESRDRLERQVDYAEVFARRRS-----DEPEMSTSFVGTPIA-------ARERATNLG- 60
           MSESRDRLERQVDYAEVFARRRS     DE EMST+ +GTPIA       A++R TNLG 
Sbjct: 1   MSESRDRLERQVDYAEVFARRRSEGGILDEQEMSTTLIGTPIARATTTTTAQQRPTNLGP 60

Query: 61  ----------PRRGFDSPASVVGIGLSRFMYRSPVLSRENSGAGSFRRCRSRRRNSVLPI 120
                     PRR F SP S  GIG +RF+YRSPVLSREN+ AGS RR RSR R+SVLPI
Sbjct: 61  GGGGGGGGAIPRRSFGSPIS-GGIGRNRFLYRSPVLSRENTAAGSSRRSRSRVRHSVLPI 120

Query: 121 WYPRTPLRDITAFVRAIERTRARLRENEGEGDDNNSPAPSNERALDLTTFVAGDDQEPSI 180
           WYPRTPLRDITA VRAIERTRARLRENEG+G D NSPAPS+ERAL+ +  V+G  QEP +
Sbjct: 121 WYPRTPLRDITAVVRAIERTRARLRENEGQGSD-NSPAPSDERALEFSASVSGGHQEPDV 180

Query: 181 SVVTPKPKVGKVIKILRRIT--NVEESELLTPQKKLLNSIDKVEKVVREELQKLRRTPSA 232
           S+VTPKP VGKV KILR I   NVEESE+LTPQKKLLNSIDKVEKVVREELQKLR+TPSA
Sbjct: 181 SLVTPKPTVGKVTKILRGIANENVEESEMLTPQKKLLNSIDKVEKVVREELQKLRKTPSA 240

[Close]

BLAST of Sed0010654 vs. NCBI nr
Match: XP_022925136.1 (protein POLYCHOME-like [Cucurbita moschata] >KAG7027617.1 Protein POLYCHOME [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 318.2 bits (814), Expect = 6.0e-83
Identity = 188/255 (73.73%), Postives = 205/255 (80.39%), Query Frame = 0


Query: 1   MSESRDRLERQVDYAEVFARRRS-----DEPEMSTSFVGTPIA-------ARERATNLG- 60
           MSESRDRLERQVDYAEVFARRRS     DE EMST+ +GTPIA       A++R TNLG 
Sbjct: 1   MSESRDRLERQVDYAEVFARRRSEGGILDEQEMSTTLIGTPIARATTTTTAQQRPTNLGP 60

Query: 61  ---------PRRGFDSPASVVGIGLSRFMYRSPVLSRENSGAGSFRRCRSRRRNSVLPIW 120
                    PRR F SP S  GIG +RF+YRSPVLSREN+ AGS RR RSR R+SVLPIW
Sbjct: 61  GGGGGGGAIPRRSFGSPIS-GGIGRNRFLYRSPVLSRENTAAGSSRRSRSRVRHSVLPIW 120

Query: 121 YPRTPLRDITAFVRAIERTRARLRENEGEGDDNNSPAPSNERALDLTTFVAGDDQEPSIS 180
           YPRTPLRDITA VRAIERTRARLRENEG+G D NSPAPS+ERAL+ +  V+G  QEP +S
Sbjct: 121 YPRTPLRDITAVVRAIERTRARLRENEGQGSD-NSPAPSDERALEFSASVSGGHQEPDVS 180

Query: 181 VVTPKPKVGKVIKILRRIT--NVEESELLTPQKKLLNSIDKVEKVVREELQKLRRTPSAK 232
           +VTPKP VGKV KILR I   NVEESE+LTPQKKLLNSIDKVEKVVREELQKLR+TPSAK
Sbjct: 181 LVTPKPTVGKVNKILRGIANENVEESEMLTPQKKLLNSIDKVEKVVREELQKLRKTPSAK 240

[Close]

BLAST of Sed0010654 vs. NCBI nr
Match: KAG6595661.1 (Ras-related protein RABA4d, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 317.8 bits (813), Expect = 7.9e-83
Identity = 188/256 (73.44%), Postives = 205/256 (80.08%), Query Frame = 0


Query: 1   MSESRDRLERQVDYAEVFARRRS-----DEPEMSTSFVGTPIA-------ARERATNLG- 60
           MSESRDRLERQVDYAEVFARRRS     DE EMST+ +GTPIA       A++R TNLG 
Sbjct: 229 MSESRDRLERQVDYAEVFARRRSEGGILDEQEMSTTLIGTPIARATTTTTAQQRPTNLGP 288

Query: 61  ----------PRRGFDSPASVVGIGLSRFMYRSPVLSRENSGAGSFRRCRSRRRNSVLPI 120
                     PRR F SP S  GIG +RF+YRSPVLSREN+ AGS RR RSR R+SVLPI
Sbjct: 289 GGGGGGGGAIPRRSFGSPIS-GGIGRNRFLYRSPVLSRENTAAGSSRRSRSRVRHSVLPI 348

Query: 121 WYPRTPLRDITAFVRAIERTRARLRENEGEGDDNNSPAPSNERALDLTTFVAGDDQEPSI 180
           WYPRTPLRDITA VRAIERTRARLRENEG+G D NSPAPS+ERAL+ +  V+G  QEP +
Sbjct: 349 WYPRTPLRDITAVVRAIERTRARLRENEGQGSD-NSPAPSDERALEFSASVSGGHQEPDV 408

Query: 181 SVVTPKPKVGKVIKILRRIT--NVEESELLTPQKKLLNSIDKVEKVVREELQKLRRTPSA 232
           S+VTPKP VGKV KILR I   NVEESE+LTPQKKLLNSIDKVEKVVREELQKLR+TPSA
Sbjct: 409 SLVTPKPTVGKVNKILRGIANENVEESEMLTPQKKLLNSIDKVEKVVREELQKLRKTPSA 468

[Close]

BLAST of Sed0010654 vs. NCBI nr
Match: XP_023518760.1 (protein POLYCHOME-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 315.5 bits (807), Expect = 3.9e-82
Identity = 187/256 (73.05%), Postives = 204/256 (79.69%), Query Frame = 0


Query: 1   MSESRDRLERQVDYAEVFARRRS-----DEPEMSTSFVGTPIA-------ARERATNLG- 60
           MSESRDRLERQVDYAEVFARRRS     DE EMST+ +GTPIA       A++R TNLG 
Sbjct: 1   MSESRDRLERQVDYAEVFARRRSEGGILDEQEMSTTLIGTPIARATTTTTAQQRPTNLGP 60

Query: 61  ----------PRRGFDSPASVVGIGLSRFMYRSPVLSRENSGAGSFRRCRSRRRNSVLPI 120
                     PRR F SP S  GIG +R +YRSPVLSREN+ AGS RR RSR R+SVLPI
Sbjct: 61  GGGGGGGGAIPRRSFGSPIS-GGIGRNRLLYRSPVLSRENTAAGSSRRSRSRVRHSVLPI 120

Query: 121 WYPRTPLRDITAFVRAIERTRARLRENEGEGDDNNSPAPSNERALDLTTFVAGDDQEPSI 180
           WYPRTPLRDITA VRAIERTRARLRENEG+G D NSPAPS+ERAL+ +  V+G  QEP +
Sbjct: 121 WYPRTPLRDITAVVRAIERTRARLRENEGQGSD-NSPAPSDERALEFSASVSGGHQEPDV 180

Query: 181 SVVTPKPKVGKVIKILRRIT--NVEESELLTPQKKLLNSIDKVEKVVREELQKLRRTPSA 232
           S+VTPKP VGKV KILR I   NVEESE+LTPQKKLLNSIDKVEKVVREELQKLR+TPSA
Sbjct: 181 SLVTPKPTVGKVNKILRGIANENVEESEMLTPQKKLLNSIDKVEKVVREELQKLRKTPSA 240

[Close]

BLAST of Sed0010654 vs. NCBI nr
Match: XP_038881398.1 (protein POLYCHOME [Benincasa hispida])

HSP 1 Score: 306.2 bits (783), Expect = 2.4e-79
Identity = 182/251 (72.51%), Postives = 200/251 (79.68%), Query Frame = 0


Query: 1   MSESRDRLERQVDYAEVFARRRS----DEPEMSTSFVGTPIA-------ARERATNLGP- 60
           MSE+RDRLERQVD+AEVFARRRS    DE EM++  +GTPIA       A++R TN GP 
Sbjct: 1   MSEARDRLERQVDHAEVFARRRSEGILDEQEMNSHLIGTPIARPTTTTTAQQRPTNPGPG 60

Query: 61  ------RRGFDSPASVVGIGLSRFMYRSPVLSRENSGAGSFRRCRSRRRNSVLPIWYPRT 120
                 RR F SP S  GIG +RF+YRSPVL+REN+ AGS RR RSR RNSVLPIWYPRT
Sbjct: 61  GGGANLRRAFGSPIS-GGIGRNRFLYRSPVLNRENTAAGSSRRNRSRGRNSVLPIWYPRT 120

Query: 121 PLRDITAFVRAIERTRARLRENEGEGDDNNSPAPSNERALDLTTFVAGDDQEPSISVVTP 180
           PLRDITA VRAIERTRARLRENEG+G D NSPAPS+ERAL+ T  VAGD QEPSIS+VTP
Sbjct: 121 PLRDITAVVRAIERTRARLRENEGQGSD-NSPAPSDERALEYTVLVAGDHQEPSISLVTP 180

Query: 181 KPKVGKVIKILRRITNVEE--SELLTPQKKLLNSIDKVEKVVREELQKLRRTPSAKRAER 232
           KP VGKV KILR I N     +E LTPQKKLLNSIDKVEKVV EELQKL+RTPSAK+AER
Sbjct: 181 KPTVGKVRKILRGIANENTVGAETLTPQKKLLNSIDKVEKVVMEELQKLKRTPSAKKAER 240

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BLAST of Sed0010654 vs. ExPASy Swiss-Prot
Match: O48533 (Protein POLYCHOME OS=Arabidopsis thaliana OX=3702 GN=PYM PE=1 SV=1)

HSP 1 Score: 174.9 bits (442), Expect = 1.1e-42
Identity = 126/262 (48.09%), Postives = 147/262 (56.11%), Query Frame = 0


Query: 1   MSESRDRLERQVDYAEVFARRRS-----DEPEMSTSFVGTPI--AARERATNLGP----- 60
           M E+RDR+ERQVDY   F  RRS     DEP    +  G+P+     E    LG      
Sbjct: 1   MPEARDRIERQVDYPAAFLNRRSHGILLDEPATQHNLFGSPVQRVPSEATGGLGSIGQGS 60

Query: 61  -------RRGFDSPASVVGIGLSRFMYRSPVLSRENSGAGSFRRCRSRRRNSVLPIWYPR 120
                   RG        G    +  +RSP   REN   G  RR R+R  NSVLP WYPR
Sbjct: 61  MTGRGGLVRGNFGIRRTGGGRRGQIQFRSP-QGRENMSLGVTRRGRARASNSVLPSWYPR 120

Query: 121 TPLRDITAFVRAIERTRARLRENEGEGDDNNSPAPSNERALDLTTFVAGDDQEPSISVVT 180
           TPLRDI+A VRAIER RAR+   EG G D  +P P     LD    ++G   E   S+VT
Sbjct: 121 TPLRDISAVVRAIERRRARM--GEGVGRDIETPTPQQLGVLDSLVPLSGAHLEHDYSMVT 180

Query: 181 PKPKVG----------KVIKILRRIT--NVEESELLTPQKKLLNSIDKVEKVVREELQKL 232
           P P +G          KV +IL  IT  N  E + LTP+KKLLNSIDKVEKVV EE+QK+
Sbjct: 181 PGPSIGFKRPWPPSTAKVHQILLDITRENTGEEDALTPEKKLLNSIDKVEKVVMEEIQKM 240

[Close]

BLAST of Sed0010654 vs. ExPASy Swiss-Prot
Match: Q9M2R1 (Protein GIGAS CELL1 OS=Arabidopsis thaliana OX=3702 GN=GIG1 PE=1 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 2.0e-28
Identity = 109/256 (42.58%), Postives = 133/256 (51.95%), Query Frame = 0


Query: 1   MSESRDRLERQVDYAEVFARRRS-----DEPEMSTSFVGTPI---AARERATNLGPRRGF 60
           M E+RDR ER VDY+ +FA RR      DEP+   S + +P+         T    R  F
Sbjct: 1   MPEARDRTERPVDYSTIFANRRRHGILLDEPDSRLSLIESPVNPDIGSIGGTGGLVRGNF 60

Query: 61  DSPASVVGIGLSRFMYRSPVLSRENSGAGSFRRCRSRRRNSVLPIWYPRTPLRDITAFVR 120
            +     G G     +R P   REN    + RR R      +LP WYPRTPLRDIT  VR
Sbjct: 61  TTWRPGNGRG-GHTPFRLP-QGRENMPIVTARRGRG---GGLLPSWYPRTPLRDITHIVR 120

Query: 121 AIERTRARLRENEGEGDDNNS----PAPSNERALDLTTFVAGDDQEPSISVVTPKPKVG- 180
           AIER     R   G G D+      P       L+    ++G   E   S+VTP P VG 
Sbjct: 121 AIER-----RRGAGTGGDDGRVIEIPTHRQVGVLESPVPLSG---EHKCSMVTPGPSVGF 180

Query: 181 ---------KVIKILRRITN---VEESELLTPQKKLLNSIDKVEKVVREELQKLRRTPSA 232
                    KV K+L  IT     EE+  +TP+KKLLNSIDKVEK+V  E+QKL+ TP A
Sbjct: 181 KRSCPPSTAKVQKMLLDITKEIAEEEAGFITPEKKLLNSIDKVEKIVMAEIQKLKSTPQA 240

[Close]

BLAST of Sed0010654 vs. ExPASy TrEMBL
Match: A0A6J1HRM8 (protein POLYCHOME OS=Cucurbita maxima OX=3661 GN=LOC111466091 PE=4 SV=1)

HSP 1 Score: 318.5 bits (815), Expect = 2.2e-83
Identity = 188/256 (73.44%), Postives = 205/256 (80.08%), Query Frame = 0


Query: 1   MSESRDRLERQVDYAEVFARRRS-----DEPEMSTSFVGTPIA-------ARERATNLG- 60
           MSESRDRLERQVDYAEVFARRRS     DE EMST+ +GTPIA       A++R TNLG 
Sbjct: 1   MSESRDRLERQVDYAEVFARRRSEGGILDEQEMSTTLIGTPIARATTTTTAQQRPTNLGP 60

Query: 61  ----------PRRGFDSPASVVGIGLSRFMYRSPVLSRENSGAGSFRRCRSRRRNSVLPI 120
                     PRR F SP S  GIG +RF+YRSPVLSREN+ AGS RR RSR R+SVLPI
Sbjct: 61  GGGGGGGGAIPRRSFGSPIS-GGIGRNRFLYRSPVLSRENTAAGSSRRSRSRVRHSVLPI 120

Query: 121 WYPRTPLRDITAFVRAIERTRARLRENEGEGDDNNSPAPSNERALDLTTFVAGDDQEPSI 180
           WYPRTPLRDITA VRAIERTRARLRENEG+G D NSPAPS+ERAL+ +  V+G  QEP +
Sbjct: 121 WYPRTPLRDITAVVRAIERTRARLRENEGQGSD-NSPAPSDERALEFSASVSGGHQEPDV 180

Query: 181 SVVTPKPKVGKVIKILRRIT--NVEESELLTPQKKLLNSIDKVEKVVREELQKLRRTPSA 232
           S+VTPKP VGKV KILR I   NVEESE+LTPQKKLLNSIDKVEKVVREELQKLR+TPSA
Sbjct: 181 SLVTPKPTVGKVTKILRGIANENVEESEMLTPQKKLLNSIDKVEKVVREELQKLRKTPSA 240

[Close]

BLAST of Sed0010654 vs. ExPASy TrEMBL
Match: A0A6J1EBD1 (protein POLYCHOME-like OS=Cucurbita moschata OX=3662 GN=LOC111432471 PE=4 SV=1)

HSP 1 Score: 318.2 bits (814), Expect = 2.9e-83
Identity = 188/255 (73.73%), Postives = 205/255 (80.39%), Query Frame = 0


Query: 1   MSESRDRLERQVDYAEVFARRRS-----DEPEMSTSFVGTPIA-------ARERATNLG- 60
           MSESRDRLERQVDYAEVFARRRS     DE EMST+ +GTPIA       A++R TNLG 
Sbjct: 1   MSESRDRLERQVDYAEVFARRRSEGGILDEQEMSTTLIGTPIARATTTTTAQQRPTNLGP 60

Query: 61  ---------PRRGFDSPASVVGIGLSRFMYRSPVLSRENSGAGSFRRCRSRRRNSVLPIW 120
                    PRR F SP S  GIG +RF+YRSPVLSREN+ AGS RR RSR R+SVLPIW
Sbjct: 61  GGGGGGGAIPRRSFGSPIS-GGIGRNRFLYRSPVLSRENTAAGSSRRSRSRVRHSVLPIW 120

Query: 121 YPRTPLRDITAFVRAIERTRARLRENEGEGDDNNSPAPSNERALDLTTFVAGDDQEPSIS 180
           YPRTPLRDITA VRAIERTRARLRENEG+G D NSPAPS+ERAL+ +  V+G  QEP +S
Sbjct: 121 YPRTPLRDITAVVRAIERTRARLRENEGQGSD-NSPAPSDERALEFSASVSGGHQEPDVS 180

Query: 181 VVTPKPKVGKVIKILRRIT--NVEESELLTPQKKLLNSIDKVEKVVREELQKLRRTPSAK 232
           +VTPKP VGKV KILR I   NVEESE+LTPQKKLLNSIDKVEKVVREELQKLR+TPSAK
Sbjct: 181 LVTPKPTVGKVNKILRGIANENVEESEMLTPQKKLLNSIDKVEKVVREELQKLRKTPSAK 240

[Close]

BLAST of Sed0010654 vs. ExPASy TrEMBL
Match: A0A0A0KY99 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G152290 PE=4 SV=1)

HSP 1 Score: 298.9 bits (764), Expect = 1.8e-77
Identity = 178/251 (70.92%), Postives = 198/251 (78.88%), Query Frame = 0


Query: 1   MSESRDRLERQVDYAEVFARRRS----DEPEMSTSFVGTPIA-------ARERATNLGP- 60
           MSE+RDRLERQVDYAEVFARRRS    DE EM ++ +GTPIA       A++R TN GP 
Sbjct: 65  MSEARDRLERQVDYAEVFARRRSEGILDEQEMGSNLIGTPIARATTTNTAQQRPTNPGPG 124

Query: 61  ------RRGFDSPASVVGIGLSRFMYRSPVLSRENSGAGSFRRCRSRRRNSVLPIWYPRT 120
                 RR F SP S  GIG +RF+YR+PVLSREN  AGS RR RSR RNSVLPIWYPRT
Sbjct: 125 GGGTNLRRTFGSPIS-GGIGRNRFLYRTPVLSRENPSAGSSRRSRSRGRNSVLPIWYPRT 184

Query: 121 PLRDITAFVRAIERTRARLRENEGEGDDNNSPAPSNERALDLTTFVAGDDQEPSISVVTP 180
           PLRDITA VRAIERTRARLRENEG+G D +SPAPS+ERAL+ +  VA D QEP IS++TP
Sbjct: 185 PLRDITAVVRAIERTRARLRENEGQGSD-SSPAPSDERALEYSVSVASDHQEPIISLLTP 244

Query: 181 KPKVGKVIKILRRITNVEE--SELLTPQKKLLNSIDKVEKVVREELQKLRRTPSAKRAER 232
           KP VGKV KILR I N     +E+LTPQKKLLNSIDKVEKVV EELQKL+RTPSAK+AER
Sbjct: 245 KPTVGKVPKILRGIANENTVGAEILTPQKKLLNSIDKVEKVVMEELQKLKRTPSAKKAER 304

[Close]

BLAST of Sed0010654 vs. ExPASy TrEMBL
Match: A0A5D3BM43 (Protein POLYCHOME OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2510G00330 PE=4 SV=1)

HSP 1 Score: 297.7 bits (761), Expect = 4.1e-77
Identity = 178/251 (70.92%), Postives = 197/251 (78.49%), Query Frame = 0


Query: 1   MSESRDRLERQVDYAEVFARRRS----DEPEMSTSFVGTPI-------AARERATNLGP- 60
           MSE+RDRLERQVDYAEVFARRRS    DE EM ++ +GTPI       AA++R TN GP 
Sbjct: 1   MSEARDRLERQVDYAEVFARRRSEGILDEQEMGSNLIGTPIARATTTTAAQQRPTNPGPG 60

Query: 61  ------RRGFDSPASVVGIGLSRFMYRSPVLSRENSGAGSFRRCRSRRRNSVLPIWYPRT 120
                 RR F SP S  GIG +RF+YR+PVLSREN  AGS RR RSR RNSVLPIWYPRT
Sbjct: 61  GGGANLRRTFGSPIS-GGIGRNRFLYRTPVLSRENPSAGSSRRSRSRGRNSVLPIWYPRT 120

Query: 121 PLRDITAFVRAIERTRARLRENEGEGDDNNSPAPSNERALDLTTFVAGDDQEPSISVVTP 180
           PLRDITA VRAIERTRARLRENEG+G D +SPAPS+ERAL+ +  VA D QEP IS++TP
Sbjct: 121 PLRDITAVVRAIERTRARLRENEGQGSD-SSPAPSDERALEYSVSVASDHQEPIISLLTP 180

Query: 181 KPKVGKVIKILRRITNVEE--SELLTPQKKLLNSIDKVEKVVREELQKLRRTPSAKRAER 232
           KP VGKV KILR I N     +E LTPQKKLLNSIDKVEKVV EELQKL+RTPSAK+AER
Sbjct: 181 KPTVGKVPKILRGIANENTVGAETLTPQKKLLNSIDKVEKVVMEELQKLKRTPSAKKAER 240

[Close]

BLAST of Sed0010654 vs. ExPASy TrEMBL
Match: A0A1S3CDA1 (protein POLYCHOME OS=Cucumis melo OX=3656 GN=LOC103499559 PE=4 SV=1)

HSP 1 Score: 297.7 bits (761), Expect = 4.1e-77
Identity = 178/251 (70.92%), Postives = 197/251 (78.49%), Query Frame = 0


Query: 1   MSESRDRLERQVDYAEVFARRRS----DEPEMSTSFVGTPI-------AARERATNLGP- 60
           MSE+RDRLERQVDYAEVFARRRS    DE EM ++ +GTPI       AA++R TN GP 
Sbjct: 1   MSEARDRLERQVDYAEVFARRRSEGILDEQEMGSNLIGTPIARATTTTAAQQRPTNPGPG 60

Query: 61  ------RRGFDSPASVVGIGLSRFMYRSPVLSRENSGAGSFRRCRSRRRNSVLPIWYPRT 120
                 RR F SP S  GIG +RF+YR+PVLSREN  AGS RR RSR RNSVLPIWYPRT
Sbjct: 61  GGGANLRRTFGSPIS-GGIGRNRFLYRTPVLSRENPSAGSSRRSRSRGRNSVLPIWYPRT 120

Query: 121 PLRDITAFVRAIERTRARLRENEGEGDDNNSPAPSNERALDLTTFVAGDDQEPSISVVTP 180
           PLRDITA VRAIERTRARLRENEG+G D +SPAPS+ERAL+ +  VA D QEP IS++TP
Sbjct: 121 PLRDITAVVRAIERTRARLRENEGQGSD-SSPAPSDERALEYSVSVASDHQEPIISLLTP 180

Query: 181 KPKVGKVIKILRRITNVEE--SELLTPQKKLLNSIDKVEKVVREELQKLRRTPSAKRAER 232
           KP VGKV KILR I N     +E LTPQKKLLNSIDKVEKVV EELQKL+RTPSAK+AER
Sbjct: 181 KPTVGKVPKILRGIANENTVGAETLTPQKKLLNSIDKVEKVVMEELQKLKRTPSAKKAER 240

[Close]

BLAST of Sed0010654 vs. TAIR 10
Match: AT2G42260.1 (uv-b-insensitive 4 )

HSP 1 Score: 174.9 bits (442), Expect = 7.7e-44
Identity = 126/262 (48.09%), Postives = 147/262 (56.11%), Query Frame = 0


Query: 1   MSESRDRLERQVDYAEVFARRRS-----DEPEMSTSFVGTPI--AARERATNLGP----- 60
           M E+RDR+ERQVDY   F  RRS     DEP    +  G+P+     E    LG      
Sbjct: 1   MPEARDRIERQVDYPAAFLNRRSHGILLDEPATQHNLFGSPVQRVPSEATGGLGSIGQGS 60

Query: 61  -------RRGFDSPASVVGIGLSRFMYRSPVLSRENSGAGSFRRCRSRRRNSVLPIWYPR 120
                   RG        G    +  +RSP   REN   G  RR R+R  NSVLP WYPR
Sbjct: 61  MTGRGGLVRGNFGIRRTGGGRRGQIQFRSP-QGRENMSLGVTRRGRARASNSVLPSWYPR 120

Query: 121 TPLRDITAFVRAIERTRARLRENEGEGDDNNSPAPSNERALDLTTFVAGDDQEPSISVVT 180
           TPLRDI+A VRAIER RAR+   EG G D  +P P     LD    ++G   E   S+VT
Sbjct: 121 TPLRDISAVVRAIERRRARM--GEGVGRDIETPTPQQLGVLDSLVPLSGAHLEHDYSMVT 180

Query: 181 PKPKVG----------KVIKILRRIT--NVEESELLTPQKKLLNSIDKVEKVVREELQKL 232
           P P +G          KV +IL  IT  N  E + LTP+KKLLNSIDKVEKVV EE+QK+
Sbjct: 181 PGPSIGFKRPWPPSTAKVHQILLDITRENTGEEDALTPEKKLLNSIDKVEKVVMEEIQKM 240

[Close]

BLAST of Sed0010654 vs. TAIR 10
Match: AT3G57860.1 (UV-B-insensitive 4-like )

HSP 1 Score: 127.5 bits (319), Expect = 1.4e-29
Identity = 109/256 (42.58%), Postives = 133/256 (51.95%), Query Frame = 0


Query: 1   MSESRDRLERQVDYAEVFARRRS-----DEPEMSTSFVGTPI---AARERATNLGPRRGF 60
           M E+RDR ER VDY+ +FA RR      DEP+   S + +P+         T    R  F
Sbjct: 1   MPEARDRTERPVDYSTIFANRRRHGILLDEPDSRLSLIESPVNPDIGSIGGTGGLVRGNF 60

Query: 61  DSPASVVGIGLSRFMYRSPVLSRENSGAGSFRRCRSRRRNSVLPIWYPRTPLRDITAFVR 120
            +     G G     +R P   REN    + RR R      +LP WYPRTPLRDIT  VR
Sbjct: 61  TTWRPGNGRG-GHTPFRLP-QGRENMPIVTARRGRG---GGLLPSWYPRTPLRDITHIVR 120

Query: 121 AIERTRARLRENEGEGDDNNS----PAPSNERALDLTTFVAGDDQEPSISVVTPKPKVG- 180
           AIER     R   G G D+      P       L+    ++G   E   S+VTP P VG 
Sbjct: 121 AIER-----RRGAGTGGDDGRVIEIPTHRQVGVLESPVPLSG---EHKCSMVTPGPSVGF 180

Query: 181 ---------KVIKILRRITN---VEESELLTPQKKLLNSIDKVEKVVREELQKLRRTPSA 232
                    KV K+L  IT     EE+  +TP+KKLLNSIDKVEK+V  E+QKL+ TP A
Sbjct: 181 KRSCPPSTAKVQKMLLDITKEIAEEEAGFITPEKKLLNSIDKVEKIVMAEIQKLKSTPQA 240

The following BLAST results are available for this feature:

BLAST of Sed0010654 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022966440.1	4.6e-83	73.44	protein POLYCHOME [Cucurbita maxima]	[more]
XP_022925136.1	6.0e-83	73.73	protein POLYCHOME-like [Cucurbita moschata] >KAG7027617.1 Protein POLYCHOME [Cuc...	[more]
KAG6595661.1	7.9e-83	73.44	Ras-related protein RABA4d, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_023518760.1	3.9e-82	73.05	protein POLYCHOME-like [Cucurbita pepo subsp. pepo]	[more]
XP_038881398.1	2.4e-79	72.51	protein POLYCHOME [Benincasa hispida]	[more]

BLAST of Sed0010654 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O48533	1.1e-42	48.09	Protein POLYCHOME OS=Arabidopsis thaliana OX=3702 GN=PYM PE=1 SV=1	[more]
Q9M2R1	2.0e-28	42.58	Protein GIGAS CELL1 OS=Arabidopsis thaliana OX=3702 GN=GIG1 PE=1 SV=1	[more]

BLAST of Sed0010654 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HRM8	2.2e-83	73.44	protein POLYCHOME OS=Cucurbita maxima OX=3661 GN=LOC111466091 PE=4 SV=1	[more]
A0A6J1EBD1	2.9e-83	73.73	protein POLYCHOME-like OS=Cucurbita moschata OX=3662 GN=LOC111432471 PE=4 SV=1	[more]
A0A0A0KY99	1.8e-77	70.92	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G152290 PE=4 SV=1	[more]
A0A5D3BM43	4.1e-77	70.92	Protein POLYCHOME OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2510G0...	[more]
A0A1S3CDA1	4.1e-77	70.92	protein POLYCHOME OS=Cucumis melo OX=3656 GN=LOC103499559 PE=4 SV=1	[more]

BLAST of Sed0010654 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G42260.1	7.7e-44	48.09	uv-b-insensitive 4	[more]
AT3G57860.1	1.4e-29	42.58	UV-B-insensitive 4-like	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 223..243
None	No IPR available	PANTHER	PTHR35119:SF1	PROTEIN POLYCHOME	coord: 13..243
IPR034590	POLYCHOME/GIGAS CELL1	PANTHER	PTHR35119	PROTEIN POLYCHOME	coord: 13..243

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0010654.1	Sed0010654.1	mRNA
Sed0010654.2	Sed0010654.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:1904667	negative regulation of ubiquitin protein ligase activity
biological_process	GO:0051783	regulation of nuclear division
cellular_component	GO:0005634	nucleus