Sed0010654.2 (mRNA) Chayote v1

Overview


Name	Sed0010654.2
Type	mRNA
Organism	Sechium edule (Chayote v1)
Description	protein POLYCHOME
Location	LG03: 17016158 .. 17019516 (+)
Sequence length	1273
RNA-Seq Expression	Sed0010654.2
Synteny	Sed0010654.2

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATCAATTCCAGTCTTCTTTATTTCCATTTCACTGTAGAGATTCTAGGAACGAAATTTATTTTTCATTGTAGTTTTCTTGTAATTTGAAATGAAATGAATGTTCTCATTGTTTGTTTGCTTCCAAAGTTCCATAATGTCGGAATCAAGGGATAGATTGGAGAGGCAAGTGGACTATGCGGAGGTTTTTGCTCGTCGGAGATCGGACGAGCCAGAAATGAGCACCAGTTTCGTAGGAACTCCGATTGCGGCTCGAGAAAGAGCTACGAATCTCGGACCGCGACGCGGTTTTGATTCTCCAGCATCTGTTGTTGGAATTGGGCTTAGTAGATTTATGTACAGATCTCCAGTTTTGAGTCGCGAGAATTCTGGGGCTGGGAGTTTTAGGAGGTGTAGATCACGGAGGAGGAATAGTGTTTTGCCCATTTGGTATCCAAGAACCCCACTTCGTGATATTACTGCTTTTGTGAGGGTAAATTACTATGATTCCCCTTTTATTTTTGTTATGTTTTGTTCTTGTTTTCTGGAATTTCTCTGCTTATAATTGTCTTTTGAATGCTTCATTTAATCCACAAGGTTTCCATACATGTTATCTGATACTTAATATTCATAACCAGTAATCTGTATCTCTTTTAAAGATGTTGAGAACTCCTCATGTTTCTAACGTGGAACAAGATGAACGAAAGACCATTTTGAATTAGATCCAAGTGTGTGGATTGAAATACTTGCTTTGGTTATTAGCTTGGATTGAATCCGAATTTGGAGGATCAAATTCTTGCTAAAGCTTATCCCTGCATGGGTGGAGTCCAAATCACCTGCATAAGTTTTACCCACTTGGGTCGAATTGAATTTGTGAAACCAATAACCCATAGATGGTGTTTGGATGAGTAATTGCATGAGTGATTATTTTGACGATGTAGATTTTTGTAGAGGAGTTGCAAGCAATAGTTTGTTTGGATGTGAATTTTTATAGAGGAGTTGCAGTCAATAACTTGTTTGAATGTAGATTTTGATAAAGATGTCACAAAATTGAGTGGTTTTAAGAAGAGGAGTTGGTTTTAACTTTTGAGACGTTGAAAACAAGTGATTAGAAATGATTGGTTATTTTAAATGGTTATAATAGTTTGTTTGAAAATAGTTTTTTGAAGAGAGGTAGTAAAATCTCATTTATAATAGCTCGTTAAATACTAACAACAAACACCTACTTAGAGAGCCTTGATACCATATTAAATAATATGAGCTTCTTGGTTTTGAGGTGAAATCTCATTTTATCTGTTTGGATTTGTTTGGTTGATATTAATCTCTTATTTTCTGTAGTTATTGCGATTCTTGTTTCTACATTTTCAGTTGGTAGCATTTCATTTGATTTGTGTTGATTTTTAATTGAAACTTTTTAGTTCGTTTGTCTAATCCATTTTGTGAATCCTTATATTAGATCACTTTCATTTCCTTTTAAGTTAATTAATTAATAAATTTCCAGTGTTTTTAAGCTATTGGCTACCTACTTGTCTGTCTAAAAAGAAGATTCTAAAGTTTTGTAACGTCCACAGTTAATTAAAGTTAGCCCAATGATTTCAAATGGAACATCAACAATCTGGATAATGACATCTTGTCCACAATTACTTAAAGTTGCCTAATTCTTTTACTTTTGAGTATTTTTATTTATTTGTTTTTTTGTTCCAATGACTTTCTAGGCTTAAATTTGACCTGTTAGTATAACTACTTTTTGATGGACTCAATATGCTTCGTCCGAGTGCTAGAATGACTGACTAGGGAATAAATTAACATTTTGAGATCGGTAATTTGGATGTAAAATTGCTGATTTTCAAGGAAATGCGAATTTATAGAACTTGAGTGAGAATAATTATCAAATTTATGTTTTCAAGTAACTAGGTACTATGCATTATTGACTTTTGGTTTATTAAGGTTATATAGAAGTTTATTTGTTAAACTTAATGTAGGACATTATATATTGCTCTTTCGTGTAAATATTATCATACAACAATGTAAGCTAATAATTATCATTATTTGAGTTCAAAGCATTATTATGATTTATGAGCATCTTTGTAATGTATTAAAATTGTTCTATGACTTTTAAAAATGTATAGTGTAAATGTCTGCTTTTGTGTCCTCATCTTAATTCTTACCAAAAGTATCATGTAACCATATATTAACCATATCTTATTTATGCAATTCATATCAAATCATTGCTAATTCTTAAATTGCTTTGCTGATATTGTTGCTGTCAATGTGAAAAATTTCCCCATCTTTTCACGGGTTTCATTTGCAACTGCATTTAGAAGTCTTTACTCTGATATGTCCTTTAACCAAAGCGAATTCTCTTCAAATAAATGCATATGAACTCAATATATTGTATTAATTCTGTAAATTCCAATTTCAGGTGTTATAAACTTATTATGCTCTTATCTTGTATGTCATGCACAATCACAATAGCACCTGTGTTGTTCCTGGAGATCTCTCCTTTCCCAGTTTTTCATTTGGGGTTGTGGTCTTCAAATAGTGTTCTTAATTTGGAGTGAATCTTAATGTTTGAGCAGGCAATTGAAAGAACAAGAGCTCGATTGAGAGAAAATGAAGGCGAAGGAGATGATAATAATAGTCCAGCTCCCTCCAACGAAAGAGCTTTAGATTTGACCACATTTGTTGCAGGTGATGATCAAGAGCCTAGTATTTCTGTGGTGACCCCAAAACCAAAGGTAGGCAAAGTAATAAAGATTCTTCGCAGAATCACAAATGTGGAAGAATCCGAGCTGCTTACACCGCAGAAGAAGCTGTTGAACTCCATTGACAAAGTGGAGAAAGTAGTAAGGGAAGAGTTGCAGAAACTGAGAAGGACACCGAGTGCCAAGAGGGCCGAGAGGGAAAAAAGAGTTCGCACTTTGATGTCATTTCGTTGATTATTATTATTTTTTAGTTCAACTACAATTGAGGAAAAGAGATTTGAACACATGATCTCTTGGTCATGGAAACACATGGATGCCGTTTAGCTACTGTGATTATTGGCATCATTTTCAGATTTAGTTCAACACAATCACTCCTAGAATTGGGGAGACCAGATTCACTCAAATCTTAGACCGTCCAATCATCTGCTGATGATTCTTTGGTAAACAGTGCTGGTTGATCAGATGGAGGAGTCTCATCTTCTGATGACATCTCTAGAAGACTATTATGTTACTTTTCTGTTGAATGAATTCTTTTCATTTTCAAAAGCCTTGTGAGTTTTGTTTACTGCAAATGTAGATAGTCAAAGTAGGCCTTTTTGGGGTGGAAATCATGTATATAGAATATTATATTCGTGCTCTTAGACTTTAATTTTTGTCTTTCATTATCTGATAAGATGC

mRNA sequence

ATCAATTCCAGTCTTCTTTATTTCCATTTCACTGTAGAGATTCTAGGAACGAAATTTATTTTTCATTGTAGTTTTCTTGTAATTTGAAATGAAATGAATGTTCTCATTGTTTGTTTGCTTCCAAAGTTCCATAATGTCGGAATCAAGGGATAGATTGGAGAGGCAAGTGGACTATGCGGAGGTTTTTGCTCGTCGGAGATCGGACGAGCCAGAAATGAGCACCAGTTTCGTAGGAACTCCGATTGCGGCTCGAGAAAGAGCTACGAATCTCGGACCGCGACGCGGTTTTGATTCTCCAGCATCTGTTGTTGGAATTGGGCTTAGTAGATTTATGTACAGATCTCCAGTTTTGAGTCGCGAGAATTCTGGGGCTGGGAGTTTTAGGAGGTGTAGATCACGGAGGAGGAATAGTGTTTTGCCCATTTGGTATCCAAGAACCCCACTTCGTGATATTACTGCTTTTGTGAGGGCAATTGAAAGAACAAGAGCTCGATTGAGAGAAAATGAAGGCGAAGGAGATGATAATAATAGTCCAGCTCCCTCCAACGAAAGAGCTTTAGATTTGACCACATTTGTTGCAGGTGATGATCAAGAGCCTAGTATTTCTGTGGTGACCCCAAAACCAAAGGTAGGCAAAGTAATAAAGATTCTTCGCAGAATCACAAATGTGGAAGAATCCGAGCTGCTTACACCGCAGAAGAAGCTGTTGAACTCCATTGACAAAGTGGAGAAAGTAGTAAGGGAAGAGTTGCAGAAACTGAGAAGGACACCGAGTGCCAAGAGGGCCGAGAGGGAAAAAAGAGTTCGCACTTTGATGTCATTTCGTTGATTATTATTATTTTTTAGTTCAACTACAATTGAGGAAAAGAGATTTGAACACATGATCTCTTGGTCATGGAAACACATGGATGCCGTTTAGCTACTGTGATTATTGGCATCATTTTCAGATTTAGTTCAACACAATCACTCCTAGAATTGGGGAGACCAGATTCACTCAAATCTTAGACCGTCCAATCATCTGCTGATGATTCTTTGGTAAACAGTGCTGGTTGATCAGATGGAGGAGTCTCATCTTCTGATGACATCTCTAGAAGACTATTATGTTACTTTTCTGTTGAATGAATTCTTTTCATTTTCAAAAGCCTTGTGAGTTTTGTTTACTGCAAATGTAGATAGTCAAAGTAGGCCTTTTTGGGGTGGAAATCATGTATATAGAATATTATATTCGTGCTCTTAGACTTTAATTTTTGTCTTTCATTATCTGATAAGATGC

Coding sequence (CDS)

ATGTTCTCATTGTTTGTTTGCTTCCAAAGTTCCATAATGTCGGAATCAAGGGATAGATTGGAGAGGCAAGTGGACTATGCGGAGGTTTTTGCTCGTCGGAGATCGGACGAGCCAGAAATGAGCACCAGTTTCGTAGGAACTCCGATTGCGGCTCGAGAAAGAGCTACGAATCTCGGACCGCGACGCGGTTTTGATTCTCCAGCATCTGTTGTTGGAATTGGGCTTAGTAGATTTATGTACAGATCTCCAGTTTTGAGTCGCGAGAATTCTGGGGCTGGGAGTTTTAGGAGGTGTAGATCACGGAGGAGGAATAGTGTTTTGCCCATTTGGTATCCAAGAACCCCACTTCGTGATATTACTGCTTTTGTGAGGGCAATTGAAAGAACAAGAGCTCGATTGAGAGAAAATGAAGGCGAAGGAGATGATAATAATAGTCCAGCTCCCTCCAACGAAAGAGCTTTAGATTTGACCACATTTGTTGCAGGTGATGATCAAGAGCCTAGTATTTCTGTGGTGACCCCAAAACCAAAGGTAGGCAAAGTAATAAAGATTCTTCGCAGAATCACAAATGTGGAAGAATCCGAGCTGCTTACACCGCAGAAGAAGCTGTTGAACTCCATTGACAAAGTGGAGAAAGTAGTAAGGGAAGAGTTGCAGAAACTGAGAAGGACACCGAGTGCCAAGAGGGCCGAGAGGGAAAAAAGAGTTCGCACTTTGATGTCATTTCGTTGA

Protein sequence

MFSLFVCFQSSIMSESRDRLERQVDYAEVFARRRSDEPEMSTSFVGTPIAARERATNLGPRRGFDSPASVVGIGLSRFMYRSPVLSRENSGAGSFRRCRSRRRNSVLPIWYPRTPLRDITAFVRAIERTRARLRENEGEGDDNNSPAPSNERALDLTTFVAGDDQEPSISVVTPKPKVGKVIKILRRITNVEESELLTPQKKLLNSIDKVEKVVREELQKLRRTPSAKRAEREKRVRTLMSFR

Homology

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BLAST of Sed0010654.2 vs. NCBI nr
Match: KAG6595661.1 (Ras-related protein RABA4d, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 322.0 bits (824), Expect = 4.4e-84
Identity = 190/258 (73.64%), Postives = 207/258 (80.23%), Query Frame = 0


Query: 11  SIMSESRDRLERQVDYAEVFARRRS-----DEPEMSTSFVGTPIA-------ARERATNL 70
           SIMSESRDRLERQVDYAEVFARRRS     DE EMST+ +GTPIA       A++R TNL
Sbjct: 227 SIMSESRDRLERQVDYAEVFARRRSEGGILDEQEMSTTLIGTPIARATTTTTAQQRPTNL 286

Query: 71  G-----------PRRGFDSPASVVGIGLSRFMYRSPVLSRENSGAGSFRRCRSRRRNSVL 130
           G           PRR F SP S  GIG +RF+YRSPVLSREN+ AGS RR RSR R+SVL
Sbjct: 287 GPGGGGGGGGAIPRRSFGSPIS-GGIGRNRFLYRSPVLSRENTAAGSSRRSRSRVRHSVL 346

Query: 131 PIWYPRTPLRDITAFVRAIERTRARLRENEGEGDDNNSPAPSNERALDLTTFVAGDDQEP 190
           PIWYPRTPLRDITA VRAIERTRARLRENEG+G D NSPAPS+ERAL+ +  V+G  QEP
Sbjct: 347 PIWYPRTPLRDITAVVRAIERTRARLRENEGQGSD-NSPAPSDERALEFSASVSGGHQEP 406

Query: 191 SISVVTPKPKVGKVIKILRRIT--NVEESELLTPQKKLLNSIDKVEKVVREELQKLRRTP 244
            +S+VTPKP VGKV KILR I   NVEESE+LTPQKKLLNSIDKVEKVVREELQKLR+TP
Sbjct: 407 DVSLVTPKPTVGKVNKILRGIANENVEESEMLTPQKKLLNSIDKVEKVVREELQKLRKTP 466

[Close]

BLAST of Sed0010654.2 vs. NCBI nr
Match: XP_022966440.1 (protein POLYCHOME [Cucurbita maxima])

HSP 1 Score: 319.7 bits (818), Expect = 2.2e-83
Identity = 188/256 (73.44%), Postives = 205/256 (80.08%), Query Frame = 0


Query: 13  MSESRDRLERQVDYAEVFARRRS-----DEPEMSTSFVGTPIA-------ARERATNLG- 72
           MSESRDRLERQVDYAEVFARRRS     DE EMST+ +GTPIA       A++R TNLG 
Sbjct: 1   MSESRDRLERQVDYAEVFARRRSEGGILDEQEMSTTLIGTPIARATTTTTAQQRPTNLGP 60

Query: 73  ----------PRRGFDSPASVVGIGLSRFMYRSPVLSRENSGAGSFRRCRSRRRNSVLPI 132
                     PRR F SP S  GIG +RF+YRSPVLSREN+ AGS RR RSR R+SVLPI
Sbjct: 61  GGGGGGGGAIPRRSFGSPIS-GGIGRNRFLYRSPVLSRENTAAGSSRRSRSRVRHSVLPI 120

Query: 133 WYPRTPLRDITAFVRAIERTRARLRENEGEGDDNNSPAPSNERALDLTTFVAGDDQEPSI 192
           WYPRTPLRDITA VRAIERTRARLRENEG+G D NSPAPS+ERAL+ +  V+G  QEP +
Sbjct: 121 WYPRTPLRDITAVVRAIERTRARLRENEGQGSD-NSPAPSDERALEFSASVSGGHQEPDV 180

Query: 193 SVVTPKPKVGKVIKILRRIT--NVEESELLTPQKKLLNSIDKVEKVVREELQKLRRTPSA 244
           S+VTPKP VGKV KILR I   NVEESE+LTPQKKLLNSIDKVEKVVREELQKLR+TPSA
Sbjct: 181 SLVTPKPTVGKVTKILRGIANENVEESEMLTPQKKLLNSIDKVEKVVREELQKLRKTPSA 240

[Close]

BLAST of Sed0010654.2 vs. NCBI nr
Match: XP_022925136.1 (protein POLYCHOME-like [Cucurbita moschata] >KAG7027617.1 Protein POLYCHOME [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 319.3 bits (817), Expect = 2.8e-83
Identity = 188/255 (73.73%), Postives = 205/255 (80.39%), Query Frame = 0


Query: 13  MSESRDRLERQVDYAEVFARRRS-----DEPEMSTSFVGTPIA-------ARERATNLG- 72
           MSESRDRLERQVDYAEVFARRRS     DE EMST+ +GTPIA       A++R TNLG 
Sbjct: 1   MSESRDRLERQVDYAEVFARRRSEGGILDEQEMSTTLIGTPIARATTTTTAQQRPTNLGP 60

Query: 73  ---------PRRGFDSPASVVGIGLSRFMYRSPVLSRENSGAGSFRRCRSRRRNSVLPIW 132
                    PRR F SP S  GIG +RF+YRSPVLSREN+ AGS RR RSR R+SVLPIW
Sbjct: 61  GGGGGGGAIPRRSFGSPIS-GGIGRNRFLYRSPVLSRENTAAGSSRRSRSRVRHSVLPIW 120

Query: 133 YPRTPLRDITAFVRAIERTRARLRENEGEGDDNNSPAPSNERALDLTTFVAGDDQEPSIS 192
           YPRTPLRDITA VRAIERTRARLRENEG+G D NSPAPS+ERAL+ +  V+G  QEP +S
Sbjct: 121 YPRTPLRDITAVVRAIERTRARLRENEGQGSD-NSPAPSDERALEFSASVSGGHQEPDVS 180

Query: 193 VVTPKPKVGKVIKILRRIT--NVEESELLTPQKKLLNSIDKVEKVVREELQKLRRTPSAK 244
           +VTPKP VGKV KILR I   NVEESE+LTPQKKLLNSIDKVEKVVREELQKLR+TPSAK
Sbjct: 181 LVTPKPTVGKVNKILRGIANENVEESEMLTPQKKLLNSIDKVEKVVREELQKLRKTPSAK 240

[Close]

BLAST of Sed0010654.2 vs. NCBI nr
Match: XP_023518760.1 (protein POLYCHOME-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 316.6 bits (810), Expect = 1.8e-82
Identity = 187/256 (73.05%), Postives = 204/256 (79.69%), Query Frame = 0


Query: 13  MSESRDRLERQVDYAEVFARRRS-----DEPEMSTSFVGTPIA-------ARERATNLG- 72
           MSESRDRLERQVDYAEVFARRRS     DE EMST+ +GTPIA       A++R TNLG 
Sbjct: 1   MSESRDRLERQVDYAEVFARRRSEGGILDEQEMSTTLIGTPIARATTTTTAQQRPTNLGP 60

Query: 73  ----------PRRGFDSPASVVGIGLSRFMYRSPVLSRENSGAGSFRRCRSRRRNSVLPI 132
                     PRR F SP S  GIG +R +YRSPVLSREN+ AGS RR RSR R+SVLPI
Sbjct: 61  GGGGGGGGAIPRRSFGSPIS-GGIGRNRLLYRSPVLSRENTAAGSSRRSRSRVRHSVLPI 120

Query: 133 WYPRTPLRDITAFVRAIERTRARLRENEGEGDDNNSPAPSNERALDLTTFVAGDDQEPSI 192
           WYPRTPLRDITA VRAIERTRARLRENEG+G D NSPAPS+ERAL+ +  V+G  QEP +
Sbjct: 121 WYPRTPLRDITAVVRAIERTRARLRENEGQGSD-NSPAPSDERALEFSASVSGGHQEPDV 180

Query: 193 SVVTPKPKVGKVIKILRRIT--NVEESELLTPQKKLLNSIDKVEKVVREELQKLRRTPSA 244
           S+VTPKP VGKV KILR I   NVEESE+LTPQKKLLNSIDKVEKVVREELQKLR+TPSA
Sbjct: 181 SLVTPKPTVGKVNKILRGIANENVEESEMLTPQKKLLNSIDKVEKVVREELQKLRKTPSA 240

[Close]

BLAST of Sed0010654.2 vs. NCBI nr
Match: XP_038881398.1 (protein POLYCHOME [Benincasa hispida])

HSP 1 Score: 307.4 bits (786), Expect = 1.1e-79
Identity = 182/251 (72.51%), Postives = 200/251 (79.68%), Query Frame = 0


Query: 13  MSESRDRLERQVDYAEVFARRRS----DEPEMSTSFVGTPIA-------ARERATNLGP- 72
           MSE+RDRLERQVD+AEVFARRRS    DE EM++  +GTPIA       A++R TN GP 
Sbjct: 1   MSEARDRLERQVDHAEVFARRRSEGILDEQEMNSHLIGTPIARPTTTTTAQQRPTNPGPG 60

Query: 73  ------RRGFDSPASVVGIGLSRFMYRSPVLSRENSGAGSFRRCRSRRRNSVLPIWYPRT 132
                 RR F SP S  GIG +RF+YRSPVL+REN+ AGS RR RSR RNSVLPIWYPRT
Sbjct: 61  GGGANLRRAFGSPIS-GGIGRNRFLYRSPVLNRENTAAGSSRRNRSRGRNSVLPIWYPRT 120

Query: 133 PLRDITAFVRAIERTRARLRENEGEGDDNNSPAPSNERALDLTTFVAGDDQEPSISVVTP 192
           PLRDITA VRAIERTRARLRENEG+G D NSPAPS+ERAL+ T  VAGD QEPSIS+VTP
Sbjct: 121 PLRDITAVVRAIERTRARLRENEGQGSD-NSPAPSDERALEYTVLVAGDHQEPSISLVTP 180

Query: 193 KPKVGKVIKILRRITNVEE--SELLTPQKKLLNSIDKVEKVVREELQKLRRTPSAKRAER 244
           KP VGKV KILR I N     +E LTPQKKLLNSIDKVEKVV EELQKL+RTPSAK+AER
Sbjct: 181 KPTVGKVRKILRGIANENTVGAETLTPQKKLLNSIDKVEKVVMEELQKLKRTPSAKKAER 240

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BLAST of Sed0010654.2 vs. ExPASy Swiss-Prot
Match: O48533 (Protein POLYCHOME OS=Arabidopsis thaliana OX=3702 GN=PYM PE=1 SV=1)

HSP 1 Score: 175.6 bits (444), Expect = 6.7e-43
Identity = 126/262 (48.09%), Postives = 147/262 (56.11%), Query Frame = 0


Query: 13  MSESRDRLERQVDYAEVFARRRS-----DEPEMSTSFVGTPI--AARERATNLGP----- 72
           M E+RDR+ERQVDY   F  RRS     DEP    +  G+P+     E    LG      
Sbjct: 1   MPEARDRIERQVDYPAAFLNRRSHGILLDEPATQHNLFGSPVQRVPSEATGGLGSIGQGS 60

Query: 73  -------RRGFDSPASVVGIGLSRFMYRSPVLSRENSGAGSFRRCRSRRRNSVLPIWYPR 132
                   RG        G    +  +RSP   REN   G  RR R+R  NSVLP WYPR
Sbjct: 61  MTGRGGLVRGNFGIRRTGGGRRGQIQFRSP-QGRENMSLGVTRRGRARASNSVLPSWYPR 120

Query: 133 TPLRDITAFVRAIERTRARLRENEGEGDDNNSPAPSNERALDLTTFVAGDDQEPSISVVT 192
           TPLRDI+A VRAIER RAR+   EG G D  +P P     LD    ++G   E   S+VT
Sbjct: 121 TPLRDISAVVRAIERRRARM--GEGVGRDIETPTPQQLGVLDSLVPLSGAHLEHDYSMVT 180

Query: 193 PKPKVG----------KVIKILRRIT--NVEESELLTPQKKLLNSIDKVEKVVREELQKL 244
           P P +G          KV +IL  IT  N  E + LTP+KKLLNSIDKVEKVV EE+QK+
Sbjct: 181 PGPSIGFKRPWPPSTAKVHQILLDITRENTGEEDALTPEKKLLNSIDKVEKVVMEEIQKM 240

[Close]

BLAST of Sed0010654.2 vs. ExPASy Swiss-Prot
Match: Q9M2R1 (Protein GIGAS CELL1 OS=Arabidopsis thaliana OX=3702 GN=GIG1 PE=1 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 9.3e-29
Identity = 109/256 (42.58%), Postives = 133/256 (51.95%), Query Frame = 0


Query: 13  MSESRDRLERQVDYAEVFARRRS-----DEPEMSTSFVGTPI---AARERATNLGPRRGF 72
           M E+RDR ER VDY+ +FA RR      DEP+   S + +P+         T    R  F
Sbjct: 1   MPEARDRTERPVDYSTIFANRRRHGILLDEPDSRLSLIESPVNPDIGSIGGTGGLVRGNF 60

Query: 73  DSPASVVGIGLSRFMYRSPVLSRENSGAGSFRRCRSRRRNSVLPIWYPRTPLRDITAFVR 132
            +     G G     +R P   REN    + RR R      +LP WYPRTPLRDIT  VR
Sbjct: 61  TTWRPGNGRG-GHTPFRLP-QGRENMPIVTARRGRG---GGLLPSWYPRTPLRDITHIVR 120

Query: 133 AIERTRARLRENEGEGDDNNS----PAPSNERALDLTTFVAGDDQEPSISVVTPKPKVG- 192
           AIER     R   G G D+      P       L+    ++G   E   S+VTP P VG 
Sbjct: 121 AIER-----RRGAGTGGDDGRVIEIPTHRQVGVLESPVPLSG---EHKCSMVTPGPSVGF 180

Query: 193 ---------KVIKILRRITN---VEESELLTPQKKLLNSIDKVEKVVREELQKLRRTPSA 244
                    KV K+L  IT     EE+  +TP+KKLLNSIDKVEK+V  E+QKL+ TP A
Sbjct: 181 KRSCPPSTAKVQKMLLDITKEIAEEEAGFITPEKKLLNSIDKVEKIVMAEIQKLKSTPQA 240

[Close]

BLAST of Sed0010654.2 vs. ExPASy TrEMBL
Match: A0A6J1HRM8 (protein POLYCHOME OS=Cucurbita maxima OX=3661 GN=LOC111466091 PE=4 SV=1)

HSP 1 Score: 319.7 bits (818), Expect = 1.1e-83
Identity = 188/256 (73.44%), Postives = 205/256 (80.08%), Query Frame = 0


Query: 13  MSESRDRLERQVDYAEVFARRRS-----DEPEMSTSFVGTPIA-------ARERATNLG- 72
           MSESRDRLERQVDYAEVFARRRS     DE EMST+ +GTPIA       A++R TNLG 
Sbjct: 1   MSESRDRLERQVDYAEVFARRRSEGGILDEQEMSTTLIGTPIARATTTTTAQQRPTNLGP 60

Query: 73  ----------PRRGFDSPASVVGIGLSRFMYRSPVLSRENSGAGSFRRCRSRRRNSVLPI 132
                     PRR F SP S  GIG +RF+YRSPVLSREN+ AGS RR RSR R+SVLPI
Sbjct: 61  GGGGGGGGAIPRRSFGSPIS-GGIGRNRFLYRSPVLSRENTAAGSSRRSRSRVRHSVLPI 120

Query: 133 WYPRTPLRDITAFVRAIERTRARLRENEGEGDDNNSPAPSNERALDLTTFVAGDDQEPSI 192
           WYPRTPLRDITA VRAIERTRARLRENEG+G D NSPAPS+ERAL+ +  V+G  QEP +
Sbjct: 121 WYPRTPLRDITAVVRAIERTRARLRENEGQGSD-NSPAPSDERALEFSASVSGGHQEPDV 180

Query: 193 SVVTPKPKVGKVIKILRRIT--NVEESELLTPQKKLLNSIDKVEKVVREELQKLRRTPSA 244
           S+VTPKP VGKV KILR I   NVEESE+LTPQKKLLNSIDKVEKVVREELQKLR+TPSA
Sbjct: 181 SLVTPKPTVGKVTKILRGIANENVEESEMLTPQKKLLNSIDKVEKVVREELQKLRKTPSA 240

[Close]

BLAST of Sed0010654.2 vs. ExPASy TrEMBL
Match: A0A6J1EBD1 (protein POLYCHOME-like OS=Cucurbita moschata OX=3662 GN=LOC111432471 PE=4 SV=1)

HSP 1 Score: 319.3 bits (817), Expect = 1.4e-83
Identity = 188/255 (73.73%), Postives = 205/255 (80.39%), Query Frame = 0


Query: 13  MSESRDRLERQVDYAEVFARRRS-----DEPEMSTSFVGTPIA-------ARERATNLG- 72
           MSESRDRLERQVDYAEVFARRRS     DE EMST+ +GTPIA       A++R TNLG 
Sbjct: 1   MSESRDRLERQVDYAEVFARRRSEGGILDEQEMSTTLIGTPIARATTTTTAQQRPTNLGP 60

Query: 73  ---------PRRGFDSPASVVGIGLSRFMYRSPVLSRENSGAGSFRRCRSRRRNSVLPIW 132
                    PRR F SP S  GIG +RF+YRSPVLSREN+ AGS RR RSR R+SVLPIW
Sbjct: 61  GGGGGGGAIPRRSFGSPIS-GGIGRNRFLYRSPVLSRENTAAGSSRRSRSRVRHSVLPIW 120

Query: 133 YPRTPLRDITAFVRAIERTRARLRENEGEGDDNNSPAPSNERALDLTTFVAGDDQEPSIS 192
           YPRTPLRDITA VRAIERTRARLRENEG+G D NSPAPS+ERAL+ +  V+G  QEP +S
Sbjct: 121 YPRTPLRDITAVVRAIERTRARLRENEGQGSD-NSPAPSDERALEFSASVSGGHQEPDVS 180

Query: 193 VVTPKPKVGKVIKILRRIT--NVEESELLTPQKKLLNSIDKVEKVVREELQKLRRTPSAK 244
           +VTPKP VGKV KILR I   NVEESE+LTPQKKLLNSIDKVEKVVREELQKLR+TPSAK
Sbjct: 181 LVTPKPTVGKVNKILRGIANENVEESEMLTPQKKLLNSIDKVEKVVREELQKLRKTPSAK 240

[Close]

BLAST of Sed0010654.2 vs. ExPASy TrEMBL
Match: A0A0A0KY99 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G152290 PE=4 SV=1)

HSP 1 Score: 303.1 bits (775), Expect = 1.0e-78
Identity = 180/253 (71.15%), Postives = 200/253 (79.05%), Query Frame = 0


Query: 11  SIMSESRDRLERQVDYAEVFARRRS----DEPEMSTSFVGTPIA-------ARERATNLG 70
           SIMSE+RDRLERQVDYAEVFARRRS    DE EM ++ +GTPIA       A++R TN G
Sbjct: 63  SIMSEARDRLERQVDYAEVFARRRSEGILDEQEMGSNLIGTPIARATTTNTAQQRPTNPG 122

Query: 71  P-------RRGFDSPASVVGIGLSRFMYRSPVLSRENSGAGSFRRCRSRRRNSVLPIWYP 130
           P       RR F SP S  GIG +RF+YR+PVLSREN  AGS RR RSR RNSVLPIWYP
Sbjct: 123 PGGGGTNLRRTFGSPIS-GGIGRNRFLYRTPVLSRENPSAGSSRRSRSRGRNSVLPIWYP 182

Query: 131 RTPLRDITAFVRAIERTRARLRENEGEGDDNNSPAPSNERALDLTTFVAGDDQEPSISVV 190
           RTPLRDITA VRAIERTRARLRENEG+G D +SPAPS+ERAL+ +  VA D QEP IS++
Sbjct: 183 RTPLRDITAVVRAIERTRARLRENEGQGSD-SSPAPSDERALEYSVSVASDHQEPIISLL 242

Query: 191 TPKPKVGKVIKILRRITNVEE--SELLTPQKKLLNSIDKVEKVVREELQKLRRTPSAKRA 244
           TPKP VGKV KILR I N     +E+LTPQKKLLNSIDKVEKVV EELQKL+RTPSAK+A
Sbjct: 243 TPKPTVGKVPKILRGIANENTVGAEILTPQKKLLNSIDKVEKVVMEELQKLKRTPSAKKA 302

[Close]

BLAST of Sed0010654.2 vs. ExPASy TrEMBL
Match: A0A5D3BM43 (Protein POLYCHOME OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2510G00330 PE=4 SV=1)

HSP 1 Score: 298.9 bits (764), Expect = 1.9e-77
Identity = 178/251 (70.92%), Postives = 197/251 (78.49%), Query Frame = 0


Query: 13  MSESRDRLERQVDYAEVFARRRS----DEPEMSTSFVGTPI-------AARERATNLGP- 72
           MSE+RDRLERQVDYAEVFARRRS    DE EM ++ +GTPI       AA++R TN GP 
Sbjct: 1   MSEARDRLERQVDYAEVFARRRSEGILDEQEMGSNLIGTPIARATTTTAAQQRPTNPGPG 60

Query: 73  ------RRGFDSPASVVGIGLSRFMYRSPVLSRENSGAGSFRRCRSRRRNSVLPIWYPRT 132
                 RR F SP S  GIG +RF+YR+PVLSREN  AGS RR RSR RNSVLPIWYPRT
Sbjct: 61  GGGANLRRTFGSPIS-GGIGRNRFLYRTPVLSRENPSAGSSRRSRSRGRNSVLPIWYPRT 120

Query: 133 PLRDITAFVRAIERTRARLRENEGEGDDNNSPAPSNERALDLTTFVAGDDQEPSISVVTP 192
           PLRDITA VRAIERTRARLRENEG+G D +SPAPS+ERAL+ +  VA D QEP IS++TP
Sbjct: 121 PLRDITAVVRAIERTRARLRENEGQGSD-SSPAPSDERALEYSVSVASDHQEPIISLLTP 180

Query: 193 KPKVGKVIKILRRITNVEE--SELLTPQKKLLNSIDKVEKVVREELQKLRRTPSAKRAER 244
           KP VGKV KILR I N     +E LTPQKKLLNSIDKVEKVV EELQKL+RTPSAK+AER
Sbjct: 181 KPTVGKVPKILRGIANENTVGAETLTPQKKLLNSIDKVEKVVMEELQKLKRTPSAKKAER 240

[Close]

BLAST of Sed0010654.2 vs. ExPASy TrEMBL
Match: A0A1S3CDA1 (protein POLYCHOME OS=Cucumis melo OX=3656 GN=LOC103499559 PE=4 SV=1)

HSP 1 Score: 298.9 bits (764), Expect = 1.9e-77
Identity = 178/251 (70.92%), Postives = 197/251 (78.49%), Query Frame = 0


Query: 13  MSESRDRLERQVDYAEVFARRRS----DEPEMSTSFVGTPI-------AARERATNLGP- 72
           MSE+RDRLERQVDYAEVFARRRS    DE EM ++ +GTPI       AA++R TN GP 
Sbjct: 1   MSEARDRLERQVDYAEVFARRRSEGILDEQEMGSNLIGTPIARATTTTAAQQRPTNPGPG 60

Query: 73  ------RRGFDSPASVVGIGLSRFMYRSPVLSRENSGAGSFRRCRSRRRNSVLPIWYPRT 132
                 RR F SP S  GIG +RF+YR+PVLSREN  AGS RR RSR RNSVLPIWYPRT
Sbjct: 61  GGGANLRRTFGSPIS-GGIGRNRFLYRTPVLSRENPSAGSSRRSRSRGRNSVLPIWYPRT 120

Query: 133 PLRDITAFVRAIERTRARLRENEGEGDDNNSPAPSNERALDLTTFVAGDDQEPSISVVTP 192
           PLRDITA VRAIERTRARLRENEG+G D +SPAPS+ERAL+ +  VA D QEP IS++TP
Sbjct: 121 PLRDITAVVRAIERTRARLRENEGQGSD-SSPAPSDERALEYSVSVASDHQEPIISLLTP 180

Query: 193 KPKVGKVIKILRRITNVEE--SELLTPQKKLLNSIDKVEKVVREELQKLRRTPSAKRAER 244
           KP VGKV KILR I N     +E LTPQKKLLNSIDKVEKVV EELQKL+RTPSAK+AER
Sbjct: 181 KPTVGKVPKILRGIANENTVGAETLTPQKKLLNSIDKVEKVVMEELQKLKRTPSAKKAER 240

[Close]

BLAST of Sed0010654.2 vs. TAIR 10
Match: AT2G42260.1 (uv-b-insensitive 4 )

HSP 1 Score: 175.6 bits (444), Expect = 4.7e-44
Identity = 126/262 (48.09%), Postives = 147/262 (56.11%), Query Frame = 0


Query: 13  MSESRDRLERQVDYAEVFARRRS-----DEPEMSTSFVGTPI--AARERATNLGP----- 72
           M E+RDR+ERQVDY   F  RRS     DEP    +  G+P+     E    LG      
Sbjct: 1   MPEARDRIERQVDYPAAFLNRRSHGILLDEPATQHNLFGSPVQRVPSEATGGLGSIGQGS 60

Query: 73  -------RRGFDSPASVVGIGLSRFMYRSPVLSRENSGAGSFRRCRSRRRNSVLPIWYPR 132
                   RG        G    +  +RSP   REN   G  RR R+R  NSVLP WYPR
Sbjct: 61  MTGRGGLVRGNFGIRRTGGGRRGQIQFRSP-QGRENMSLGVTRRGRARASNSVLPSWYPR 120

Query: 133 TPLRDITAFVRAIERTRARLRENEGEGDDNNSPAPSNERALDLTTFVAGDDQEPSISVVT 192
           TPLRDI+A VRAIER RAR+   EG G D  +P P     LD    ++G   E   S+VT
Sbjct: 121 TPLRDISAVVRAIERRRARM--GEGVGRDIETPTPQQLGVLDSLVPLSGAHLEHDYSMVT 180

Query: 193 PKPKVG----------KVIKILRRIT--NVEESELLTPQKKLLNSIDKVEKVVREELQKL 244
           P P +G          KV +IL  IT  N  E + LTP+KKLLNSIDKVEKVV EE+QK+
Sbjct: 181 PGPSIGFKRPWPPSTAKVHQILLDITRENTGEEDALTPEKKLLNSIDKVEKVVMEEIQKM 240

[Close]

BLAST of Sed0010654.2 vs. TAIR 10
Match: AT3G57860.1 (UV-B-insensitive 4-like )

HSP 1 Score: 128.6 bits (322), Expect = 6.6e-30
Identity = 109/256 (42.58%), Postives = 133/256 (51.95%), Query Frame = 0


Query: 13  MSESRDRLERQVDYAEVFARRRS-----DEPEMSTSFVGTPI---AARERATNLGPRRGF 72
           M E+RDR ER VDY+ +FA RR      DEP+   S + +P+         T    R  F
Sbjct: 1   MPEARDRTERPVDYSTIFANRRRHGILLDEPDSRLSLIESPVNPDIGSIGGTGGLVRGNF 60

Query: 73  DSPASVVGIGLSRFMYRSPVLSRENSGAGSFRRCRSRRRNSVLPIWYPRTPLRDITAFVR 132
            +     G G     +R P   REN    + RR R      +LP WYPRTPLRDIT  VR
Sbjct: 61  TTWRPGNGRG-GHTPFRLP-QGRENMPIVTARRGRG---GGLLPSWYPRTPLRDITHIVR 120

Query: 133 AIERTRARLRENEGEGDDNNS----PAPSNERALDLTTFVAGDDQEPSISVVTPKPKVG- 192
           AIER     R   G G D+      P       L+    ++G   E   S+VTP P VG 
Sbjct: 121 AIER-----RRGAGTGGDDGRVIEIPTHRQVGVLESPVPLSG---EHKCSMVTPGPSVGF 180

Query: 193 ---------KVIKILRRITN---VEESELLTPQKKLLNSIDKVEKVVREELQKLRRTPSA 244
                    KV K+L  IT     EE+  +TP+KKLLNSIDKVEK+V  E+QKL+ TP A
Sbjct: 181 KRSCPPSTAKVQKMLLDITKEIAEEEAGFITPEKKLLNSIDKVEKIVMAEIQKLKSTPQA 240

The following BLAST results are available for this feature:

BLAST of Sed0010654.2 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6595661.1	4.4e-84	73.64	Ras-related protein RABA4d, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022966440.1	2.2e-83	73.44	protein POLYCHOME [Cucurbita maxima]	[more]
XP_022925136.1	2.8e-83	73.73	protein POLYCHOME-like [Cucurbita moschata] >KAG7027617.1 Protein POLYCHOME [Cuc...	[more]
XP_023518760.1	1.8e-82	73.05	protein POLYCHOME-like [Cucurbita pepo subsp. pepo]	[more]
XP_038881398.1	1.1e-79	72.51	protein POLYCHOME [Benincasa hispida]	[more]

BLAST of Sed0010654.2 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O48533	6.7e-43	48.09	Protein POLYCHOME OS=Arabidopsis thaliana OX=3702 GN=PYM PE=1 SV=1	[more]
Q9M2R1	9.3e-29	42.58	Protein GIGAS CELL1 OS=Arabidopsis thaliana OX=3702 GN=GIG1 PE=1 SV=1	[more]

BLAST of Sed0010654.2 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HRM8	1.1e-83	73.44	protein POLYCHOME OS=Cucurbita maxima OX=3661 GN=LOC111466091 PE=4 SV=1	[more]
A0A6J1EBD1	1.4e-83	73.73	protein POLYCHOME-like OS=Cucurbita moschata OX=3662 GN=LOC111432471 PE=4 SV=1	[more]
A0A0A0KY99	1.0e-78	71.15	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G152290 PE=4 SV=1	[more]
A0A5D3BM43	1.9e-77	70.92	Protein POLYCHOME OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2510G0...	[more]
A0A1S3CDA1	1.9e-77	70.92	protein POLYCHOME OS=Cucumis melo OX=3656 GN=LOC103499559 PE=4 SV=1	[more]

BLAST of Sed0010654.2 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G42260.1	4.7e-44	48.09	uv-b-insensitive 4	[more]
AT3G57860.1	6.6e-30	42.58	UV-B-insensitive 4-like	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 223..243
None	No IPR available	PANTHER	PTHR35119:SF1	PROTEIN POLYCHOME	coord: 13..243
IPR034590	POLYCHOME/GIGAS CELL1	PANTHER	PTHR35119	PROTEIN POLYCHOME	coord: 13..243

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Sed0010654	Sed0010654	gene

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0010654.2-five_prime_utr	Sed0010654.2-five_prime_utr-LG03:17016158..17016254	five_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0010654.2-exon	Sed0010654.2-exon-LG03:17016158..17016626	exon
Sed0010654.2-exon	Sed0010654.2-exon-LG03:17018713..17019516	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0010654.2-cds	Sed0010654.2-cds-LG03:17016255..17016626	CDS
Sed0010654.2-cds	Sed0010654.2-cds-LG03:17018713..17019072	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Sed0010654.2-three_prime_utr	Sed0010654.2-three_prime_utr-LG03:17019073..17019516	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Sed0010654.2	Sed0010654.2-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:1904667	negative regulation of ubiquitin protein ligase activity
biological_process	GO:0051783	regulation of nuclear division
cellular_component	GO:0005634	nucleus